ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags32p10 |
|---|---|
| Clone Library Name | barley_pub |
>FTSY_AQUAE (O67066) Cell division protein ftsY homolog| Length = 461 Score = 129 bits (324), Expect(2) = 3e-44 Identities = 64/108 (59%), Positives = 81/108 (75%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRLHT L+ EL KKVI K P+E LLV+D TTG N +QQAK F + V ITG + Sbjct: 352 GRLHTKEPLINELRKIKKVIQKFDKEEPSETLLVIDATTGQNAIQQAKVFKEAVDITGIV 411 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 +TKLDG+A+GG VV++ EL IP+K VGVGEG++DLQPFDA+A+VEA+ Sbjct: 412 VTKLDGSAKGGAVVAICRELKIPIKLVGVGEGIDDLQPFDADAYVEAL 459 Score = 68.9 bits (167), Expect(2) = 3e-44 Identities = 33/74 (44%), Positives = 52/74 (70%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKR 197 K + K +G KVL+ AGDTFRAAA +QLE+WA+R G +IV ++ + +V+ + +K+ Sbjct: 279 KLAHQLKQKGKKVLLVAGDTFRAAAIEQLEVWAKRAGVDIV-KKEEGSDPGAVVYEGMKK 337 Query: 198 GKREGFDIVLCDTS 239 K EG+++VL DT+ Sbjct: 338 AKEEGYEVVLVDTA 351
>FTSY_THEAQ (P83749) Cell division protein ftsY| Length = 303 Score = 141 bits (356), Expect(2) = 3e-41 Identities = 69/115 (60%), Positives = 87/115 (75%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 L +V GRLHT + LMEEL K+ IAKA P P E+ LVLD TG N L+QAK+F++ Sbjct: 186 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEA 245 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 VG+TG I+TKLDGTA+GG ++ +V L +P+KFVGVGEG +DLQPFD EAFVEA+ Sbjct: 246 VGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEAL 300 Score = 46.6 bits (109), Expect(2) = 3e-41 Identities = 26/69 (37%), Positives = 38/69 (55%) Frame = +3 Query: 33 FKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREG 212 ++N G KV+ AGDTFRAA QL W +R S VI + ++ AV+ K G Sbjct: 125 YQNLGKKVMFCAGDTFRAAGGTQLSEWGKRL-SIPVIQGPEGTDPAALAYDAVQAMKARG 183 Query: 213 FDIVLCDTS 239 +D++ DT+ Sbjct: 184 YDLLFVDTA 192
>FTSY_NEIMC (O30391) Cell division protein ftsY homolog| Length = 421 Score = 125 bits (315), Expect(2) = 4e-41 Identities = 56/108 (51%), Positives = 82/108 (75%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL T LMEE+ K+V+ KA+P AP+EI++VLD G N + Q K F+D +G+TG I Sbjct: 312 GRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLI 371 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 +TKLDGTA+GG + ++ + +PV+++GVGEG++DL+PFDA AFV+A+ Sbjct: 372 VTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVDAL 419 Score = 62.0 bits (149), Expect(2) = 4e-41 Identities = 32/74 (43%), Positives = 45/74 (60%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKR 197 K F+ +G VL+AAGDTFRAAAR+QL+ W ER + + + + + +V AV+ Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGER--NNVTVISQTTGDSAAVCFDAVQA 297 Query: 198 GKREGFDIVLCDTS 239 K G DIVL DT+ Sbjct: 298 AKARGIDIVLADTA 311
>FTSY_NEIMB (P57011) Cell division protein ftsY homolog| Length = 421 Score = 125 bits (315), Expect(2) = 4e-41 Identities = 56/108 (51%), Positives = 82/108 (75%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL T LMEE+ K+V+ KA+P AP+EI++VLD G N + Q K F+D +G+TG I Sbjct: 312 GRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLI 371 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 +TKLDGTA+GG + ++ + +PV+++GVGEG++DL+PFDA AFV+A+ Sbjct: 372 VTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVDAL 419 Score = 62.0 bits (149), Expect(2) = 4e-41 Identities = 32/74 (43%), Positives = 45/74 (60%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKR 197 K F+ +G VL+AAGDTFRAAAR+QL+ W ER + + + + + +V AV+ Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGER--NNVTVISQTTGDSAAVCFDAVQA 297 Query: 198 GKREGFDIVLCDTS 239 K G DIVL DT+ Sbjct: 298 AKARGIDIVLADTA 311
>FTSY_NEIMA (P57010) Cell division protein ftsY homolog| Length = 421 Score = 125 bits (315), Expect(2) = 4e-41 Identities = 56/108 (51%), Positives = 82/108 (75%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL T LMEE+ K+V+ KA+P AP+EI++VLD G N + Q K F+D +G+TG I Sbjct: 312 GRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLI 371 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 +TKLDGTA+GG + ++ + +PV+++GVGEG++DL+PFDA AFV+A+ Sbjct: 372 VTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVDAL 419 Score = 62.0 bits (149), Expect(2) = 4e-41 Identities = 32/74 (43%), Positives = 45/74 (60%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKR 197 K F+ +G VL+AAGDTFRAAAR+QL+ W ER + + + + + +V AV+ Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGER--NNVTVISQTTGDSAAVCFDAVQA 297 Query: 198 GKREGFDIVLCDTS 239 K G DIVL DT+ Sbjct: 298 AKARGIDIVLADTA 311
>FTSY_BACSU (P51835) Cell division protein ftsY homolog| Length = 329 Score = 121 bits (303), Expect(2) = 4e-40 Identities = 59/109 (54%), Positives = 78/109 (71%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL LM+EL K+VI + +P AP+E+LL LD TTG N + QAKEF+ +TG Sbjct: 212 GRLQNKVNLMKELEKVKRVIEREVPEAPHEVLLALDATTGQNAMAQAKEFSKATNVTGIA 271 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAIF 567 LTKLDGTA+GG V+++ +EL IPVK VG+GE V+DLQ FD E++V +F Sbjct: 272 LTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVDDLQEFDPESYVYGLF 320 Score = 63.2 bits (152), Expect(2) = 4e-40 Identities = 33/81 (40%), Positives = 46/81 (56%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKR 197 K + K EG V++AAGDTFRA A +QLE+W ERTG VI + +V+ AV Sbjct: 139 KLAHKMKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVP-VIKQTAGSDPAAVIYDAVHA 197 Query: 198 GKREGFDIVLCDTSXTTSYKL 260 K D+++CDT+ K+ Sbjct: 198 AKARNADVLICDTAGRLQNKV 218
>FTSY_NEIGO (P14929) Cell division protein ftsY homolog| Length = 416 Score = 126 bits (317), Expect(2) = 2e-38 Identities = 56/108 (51%), Positives = 82/108 (75%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL T LMEE+ K+V+ KA+PGAP+EI++VLD G N + Q K F+D +G+TG I Sbjct: 307 GRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLI 366 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 +TKLDGTA+GG + ++ + +PV+++GVGEG++DL+PFDA AFV+ + Sbjct: 367 VTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVDRL 414 Score = 52.4 bits (124), Expect(2) = 2e-38 Identities = 30/74 (40%), Positives = 43/74 (58%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKR 197 K F+ +G VL+AAGDTFRAAAR+QL+ W R + + + + + +V AV+ Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGR--NNVTVISQTTGDSAAVCFDAVQA 293 Query: 198 GKREGFDIVLCDTS 239 K DIVL DT+ Sbjct: 294 AKAR-IDIVLADTA 306
>FTSY_ECOLI (P10121) Cell division protein ftsY| Length = 497 Score = 120 bits (301), Expect(2) = 2e-38 Identities = 56/109 (51%), Positives = 79/109 (72%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL LMEEL +V+ K AP+E++L +D +TG N + QAK F++ VG+TG Sbjct: 385 GRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGIT 444 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAIF 567 LTKLDGTA+GG + SV D+ GIP++++GVGE +EDL+PF A+ F+EA+F Sbjct: 445 LTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 493 Score = 58.2 bits (139), Expect(2) = 2e-38 Identities = 26/74 (35%), Positives = 46/74 (62%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKR 197 K +F+ +G V++AAGDTFRAAA +QL++W +R ++ + A + SV+ A++ Sbjct: 312 KLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQH-TGADSASVIFDAIQA 370 Query: 198 GKREGFDIVLCDTS 239 K D+++ DT+ Sbjct: 371 AKARNIDVLIADTA 384
>FTSY_HAEIN (P44870) Cell division protein ftsY homolog| Length = 414 Score = 114 bits (285), Expect(2) = 6e-36 Identities = 53/109 (48%), Positives = 77/109 (70%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL LM+EL +V+ K AP+EI+L LD TG N + QAK FN+ VG+TG Sbjct: 301 GRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVGLTGIS 360 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAIF 567 LTKLDGTA+GG + ++ D+ +P++++GVGE +EDL+ F+A+ F+EA+F Sbjct: 361 LTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEALF 409 Score = 56.2 bits (134), Expect(2) = 6e-36 Identities = 29/74 (39%), Positives = 44/74 (59%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKR 197 K +F+ EG V++AAGDTFRAAA +QL++W ER +V + A SV+ A++ Sbjct: 228 KLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSA-SVIFDAMQS 286 Query: 198 GKREGFDIVLCDTS 239 DI++ DT+ Sbjct: 287 AAARNIDILIADTA 300
>FTSY_MYCGE (P47539) Cell division protein ftsY homolog| Length = 346 Score = 97.1 bits (240), Expect(2) = 2e-33 Identities = 48/105 (45%), Positives = 64/105 (60%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL LM EL ++I K P+E LLVLDGT G L QAK FN+ +TG + Sbjct: 228 GRLQNKLNLMNELQKIYQIIQKVSGSEPSETLLVLDGTVGQTGLSQAKVFNEFSKLTGIV 287 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 555 LTK+DG+A+GG ++++ D +PVK +G GE DL FD E +V Sbjct: 288 LTKMDGSAKGGIILAIKDMFNLPVKLIGFGEKTSDLAIFDLEKYV 332 Score = 65.5 bits (158), Expect(2) = 2e-33 Identities = 34/76 (44%), Positives = 48/76 (63%) Frame = +3 Query: 33 FKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREG 212 F + +VL+ AGDTFRA A +QL WA+ +IV+ N K+ Q P+V+ + VK+G + Sbjct: 160 FIKQNKRVLLVAGDTFRAGAIEQLNQWAKLLNCDIVLPNPKE-QTPAVIFRGVKKGIDDK 218 Query: 213 FDIVLCDTSXTTSYKL 260 +D VLCDTS KL Sbjct: 219 YDFVLCDTSGRLQNKL 234
>FTSY_MYCPN (P75362) Cell division protein ftsY homolog| Length = 348 Score = 95.9 bits (237), Expect(2) = 3e-33 Identities = 47/105 (44%), Positives = 64/105 (60%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL LM EL +++ K P E LLVLDGTTG + L QAK FN+ +TG I Sbjct: 228 GRLQNKTNLMNELKKIYQIVQKVSSAKPQETLLVLDGTTGQSGLAQAKVFNEFTELTGII 287 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 555 LTK+D +++GG ++++ D +PVK +G GE DL FD E +V Sbjct: 288 LTKMDSSSKGGIILAIKDLFNLPVKLIGFGETTADLAAFDLEQYV 332 Score = 65.9 bits (159), Expect(2) = 3e-33 Identities = 33/74 (44%), Positives = 48/74 (64%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKR 197 K + + +VLM AGDTFRA A QL WA+R G +IV+ N K+ + P+V+ + V++ Sbjct: 155 KLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNPKE-ETPAVIFRGVQQ 213 Query: 198 GKREGFDIVLCDTS 239 G + +D VLCDTS Sbjct: 214 GIQNEYDFVLCDTS 227
>FTSY_MYCTU (P66842) Cell division protein ftsY homolog| Length = 422 Score = 116 bits (291), Expect = 4e-26 Identities = 60/108 (55%), Positives = 78/108 (72%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRLHT GLM+EL K+V+ + + +E+LLVLD T G N L QA+ F +VV I+G + Sbjct: 315 GRLHTKVGLMDELDKVKRVVTRR--ASVDEVLLVLDATIGQNGLAQARVFAEVVDISGAV 372 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 LTKLDGTA+GG V V ELG+PVK VG+GEG +DL PF+ AFV+A+ Sbjct: 373 LTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAFVDAL 420 Score = 56.6 bits (135), Expect = 5e-08 Identities = 34/84 (40%), Positives = 47/84 (55%) Frame = +3 Query: 42 EGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREGFDI 221 +G +V++ A DTFRAAA DQL+ WA R G+ V+ + A SV AV +G G D+ Sbjct: 250 DGRRVVLGAADTFRAAAADQLQTWAARVGA-AVVRGPEGADPASVAFDAVDKGIAAGADV 308 Query: 222 VLCDTSXTTSYKLRSDGRVGFLQE 293 VL DT+ R +VG + E Sbjct: 309 VLIDTAG------RLHTKVGLMDE 326
>FTSY_MYCBO (P66843) Cell division protein ftsY homolog| Length = 422 Score = 116 bits (291), Expect = 4e-26 Identities = 60/108 (55%), Positives = 78/108 (72%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRLHT GLM+EL K+V+ + + +E+LLVLD T G N L QA+ F +VV I+G + Sbjct: 315 GRLHTKVGLMDELDKVKRVVTRR--ASVDEVLLVLDATIGQNGLAQARVFAEVVDISGAV 372 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 LTKLDGTA+GG V V ELG+PVK VG+GEG +DL PF+ AFV+A+ Sbjct: 373 LTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAFVDAL 420 Score = 56.6 bits (135), Expect = 5e-08 Identities = 34/84 (40%), Positives = 47/84 (55%) Frame = +3 Query: 42 EGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREGFDI 221 +G +V++ A DTFRAAA DQL+ WA R G+ V+ + A SV AV +G G D+ Sbjct: 250 DGRRVVLGAADTFRAAAADQLQTWAARVGA-AVVRGPEGADPASVAFDAVDKGIAAGADV 308 Query: 222 VLCDTSXTTSYKLRSDGRVGFLQE 293 VL DT+ R +VG + E Sbjct: 309 VLIDTAG------RLHTKVGLMDE 326
>FTSY_MYCLE (O33010) Cell division protein ftsY homolog| Length = 430 Score = 116 bits (290), Expect = 5e-26 Identities = 61/123 (49%), Positives = 84/123 (68%) Frame = +1 Query: 196 VGSVKDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQ 375 +G+ D+++ + GRLHT GLM+EL K+V+ + A +E+LLVLD T G N L Sbjct: 310 IGAGADVVV--IDTAGRLHTKVGLMDELDKIKRVVTRR--AAVDEVLLVLDATIGQNGLT 365 Query: 376 QAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 555 Q + F +VV ITG +LTKLDGTA+GG V + ELG+PVK VG+GEG +DL PF+ FV Sbjct: 366 QVRVFAEVVDITGAVLTKLDGTAKGGIVFRIQRELGVPVKLVGLGEGPDDLAPFEPAVFV 425 Query: 556 EAI 564 +A+ Sbjct: 426 DAL 428 Score = 56.6 bits (135), Expect = 5e-08 Identities = 34/84 (40%), Positives = 48/84 (57%) Frame = +3 Query: 42 EGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREGFDI 221 +G +V++ A DTFRAAA DQL+ WA R G+E+V + A SV AV +G G D+ Sbjct: 258 DGRRVVLGAADTFRAAAADQLQTWASRVGAELV-RGVEGADPASVAFDAVDKGIGAGADV 316 Query: 222 VLCDTSXTTSYKLRSDGRVGFLQE 293 V+ DT+ R +VG + E Sbjct: 317 VVIDTAG------RLHTKVGLMDE 334
>Y291_METJA (Q57739) Probable signal recognition particle protein MJ0291| Length = 409 Score = 79.0 bits (193), Expect(2) = 6e-25 Identities = 45/109 (41%), Positives = 65/109 (59%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GR TN LMEE+ KKV+ P+ ++ V D TG + + QA+EFN V I G I Sbjct: 294 GRQATNVNLMEEI---KKVVRVT---KPDLVIFVGDALTGNDAVYQAEEFNRAVNIDGII 347 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAIF 567 LTK+D A+GG +S+ +G P+ ++GVG+ +DL FDA+ V +F Sbjct: 348 LTKVDADAKGGAALSIGYAIGKPILYLGVGQRYQDLIEFDADWMVRKLF 396 Score = 54.7 bits (130), Expect(2) = 6e-25 Identities = 30/74 (40%), Positives = 45/74 (60%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKR 197 K + K +G V++AAGDTFRA A +QLE A+ G + VI + A + +V+ A++ Sbjct: 221 KLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNVGVK-VIKHKPGADSAAVIYDAIQH 279 Query: 198 GKREGFDIVLCDTS 239 K G D+VL DT+ Sbjct: 280 AKARGIDVVLADTA 293
>SRP54_AQUAE (O67615) Signal recognition particle protein (Fifty-four homolog)| Length = 454 Score = 96.3 bits (238), Expect(2) = 1e-24 Identities = 48/108 (44%), Positives = 70/108 (64%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRLH + LM+EL K+V P+EIL V D G L+ AK F++ +G+TG + Sbjct: 187 GRLHVDEELMKELQEIKEVTN------PSEILYVADAMQGQTALETAKTFHERLGLTGVV 240 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 +TK+DG ARGG +SV + LG+P+KF+GVGE +ED++PF + + I Sbjct: 241 ITKMDGDARGGLALSVKEVLGVPIKFIGVGEKIEDIEPFYPDRIAQRI 288 Score = 36.6 bits (83), Expect(2) = 1e-24 Identities = 25/68 (36%), Positives = 36/68 (52%) Frame = +3 Query: 36 KNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREGF 215 K G KV +++ D R AA QL+ AER G + ++ A + +AVKR K E Sbjct: 120 KKGGHKVAVSSTDLRRPAAMLQLQRLAERVGVPYY-EFEEGLGAVEIARRAVKRAKEESV 178 Query: 216 DIVLCDTS 239 D +L DT+ Sbjct: 179 DYLLLDTA 186
>FTSY_SYNY3 (P73930) Cell division protein ftsY homolog| Length = 504 Score = 110 bits (276), Expect = 2e-24 Identities = 53/119 (44%), Positives = 79/119 (66%) Frame = +1 Query: 208 KDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKE 387 +++ L V GRL LM+EL +++I K P A E LLVLD T G N L+QA+ Sbjct: 383 RNVNLLLVDTAGRLQNKKNLMDELAKIRRIIDKKAPNATVESLLVLDATLGQNGLRQAEV 442 Query: 388 FNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 F + ++G +LTKLDG+A+GG ++V +L +P++F+G GEG+EDL+PF + FVEA+ Sbjct: 443 FAEAAKLSGVVLTKLDGSAKGGVALAVAQQLNLPIRFIGAGEGIEDLRPFSSYEFVEAL 501 Score = 47.4 bits (111), Expect = 3e-05 Identities = 20/68 (29%), Positives = 39/68 (57%) Frame = +3 Query: 36 KNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREGF 215 K G ++AA DTFRAAA +Q+++W ER+G ++ + + +V+ + + Sbjct: 326 KQSGYDCVIAAADTFRAAAVEQVKVWGERSGVPVIANPGQNTDPAAVVYDGISAAQSRNV 385 Query: 216 DIVLCDTS 239 +++L DT+ Sbjct: 386 NLLLVDTA 393
>FTSY_MYCHO (O32861) Cell division protein ftsY homolog| Length = 351 Score = 108 bits (271), Expect = 9e-24 Identities = 52/121 (42%), Positives = 79/121 (65%) Frame = +1 Query: 193 NVGSVKDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNML 372 ++ K + V GRL LM EL +V+A +P AP+E LLVLD TTG N + Sbjct: 222 DIAKSKKYDILIVDTAGRLQNKVNLMNELAKINRVLASKIPDAPHESLLVLDATTGQNGV 281 Query: 373 QQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAF 552 QA+ F + +TG ILTK+DGT++GG V+++ DE+G+ VK++G+GE V+DL FD +++ Sbjct: 282 IQARVFKESTPLTGIILTKMDGTSKGGIVLTIKDEIGLFVKYIGLGEKVDDLAEFDLDSY 341 Query: 553 V 555 + Sbjct: 342 I 342 Score = 71.6 bits (174), Expect = 2e-12 Identities = 35/81 (43%), Positives = 54/81 (66%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKR 197 K + +EG KVL+AAGDTFRAAA +QLEIWA+R G++IV N+ + +V+ +A+ Sbjct: 164 KIAKKLIDEGKKVLIAAGDTFRAAAVEQLEIWAKRVGADIVTPNENEVDPAAVVYRAIDI 223 Query: 198 GKREGFDIVLCDTSXTTSYKL 260 K + +DI++ DT+ K+ Sbjct: 224 AKSKKYDILIVDTAGRLQNKV 244
>SR54C_ARATH (P37107) Signal recognition particle 54 kDa protein, chloroplast| precursor (SRP54) (54 chloroplast protein) (54CP) (FFC) Length = 564 Score = 85.9 bits (211), Expect(2) = 4e-23 Identities = 47/99 (47%), Positives = 60/99 (60%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL + G+M+EL KK + P E+LLV+D TG FN +GITG I Sbjct: 268 GRLQIDKGMMDELKDVKKFLN------PTEVLLVVDAMTGQEAAALVTTFNVEIGITGAI 321 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPF 537 LTKLDG +RGG +SV + G P+K VG GE +EDL+PF Sbjct: 322 LTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPF 360 Score = 41.6 bits (96), Expect(2) = 4e-23 Identities = 22/68 (32%), Positives = 34/68 (50%) Frame = +3 Query: 36 KNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREGF 215 K +G ++ AGD +R AA DQL I E+ G + A + Q +K K+ Sbjct: 201 KKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPA-DIAKQGLKEAKKNNV 259 Query: 216 DIVLCDTS 239 D+V+ DT+ Sbjct: 260 DVVIMDTA 267
>FTSY_BUCAI (P57137) Cell division protein ftsY homolog| Length = 378 Score = 106 bits (264), Expect = 6e-23 Identities = 50/120 (41%), Positives = 79/120 (65%) Frame = +1 Query: 208 KDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKE 387 K + + + GRLH L+EEL +VI K AP+E LL++D G N +QQ + Sbjct: 258 KKIDVLIIDTAGRLHNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNGQNTIQQTEI 317 Query: 388 FNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAIF 567 F+ + +TG I+TKLDGTA+GG V S+ D+ IP++++G+GE ++DL F+++ F+E+IF Sbjct: 318 FHKALNLTGIIITKLDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFNSQEFIESIF 377 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/81 (30%), Positives = 42/81 (51%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKR 197 K ++K EG +++AA DTFRAA +QL+ + ++ A +V+ AVK Sbjct: 196 KLAEKYKLEGKSIMLAAADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPA-AVIFDAVKS 254 Query: 198 GKREGFDIVLCDTSXTTSYKL 260 K + D+++ DT+ KL Sbjct: 255 AKSKKIDVLIIDTAGRLHNKL 275
>SRP54_SYNP7 (Q55311) Signal sequence-binding protein| Length = 485 Score = 89.0 bits (219), Expect(2) = 1e-22 Identities = 49/108 (45%), Positives = 64/108 (59%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL + +MEEL K+ IA P+E+LLV+D G + F++ +GITG I Sbjct: 192 GRLQIDTEMMEELAQVKEAIA------PHEVLLVVDSMIGQEAASLTRSFHERIGITGAI 245 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 LTKLDG +RGG +S+ G P+KFVG+GE VE LQPF E I Sbjct: 246 LTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRI 293 Score = 37.0 bits (84), Expect(2) = 1e-22 Identities = 22/74 (29%), Positives = 35/74 (47%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKR 197 K + EG L+ A D +R AA DQL ++ V + A + Q V++ Sbjct: 119 KLALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVP-VFELGSDANPVEIARQGVEK 177 Query: 198 GKREGFDIVLCDTS 239 ++EG D V+ DT+ Sbjct: 178 ARQEGIDTVIVDTA 191
>SRP54_BACSU (P37105) Signal recognition particle protein (Fifty-four homolog)| Length = 446 Score = 90.1 bits (222), Expect(2) = 2e-22 Identities = 48/115 (41%), Positives = 68/115 (59%), Gaps = 2/115 (1%) Frame = +1 Query: 226 YVI--RXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 YVI GRLH ++ LM+EL + K++ P EI LV+D TG + + AK FN+ Sbjct: 187 YVILDTAGRLHIDHELMDELTNVKEI------ANPEEIFLVVDSMTGQDAVNVAKSFNEQ 240 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 +G+TG +LTKLDG RGG +S+ P+KF G+GE ++ L+PF E I Sbjct: 241 LGLTGVVLTKLDGDTRGGAALSIRAVTNTPIKFAGLGEKLDALEPFHPERMASRI 295 Score = 35.0 bits (79), Expect(2) = 2e-22 Identities = 19/68 (27%), Positives = 34/68 (50%) Frame = +3 Query: 36 KNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREGF 215 K K ++ A D +R AA QLE ++ + D+ + + QA+++ K E + Sbjct: 127 KKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPV-EIAKQAIEKAKEEHY 185 Query: 216 DIVLCDTS 239 D V+ DT+ Sbjct: 186 DYVILDTA 193
>FTSY_RICPR (O05948) Cell division protein ftsY homolog| Length = 303 Score = 101 bits (252), Expect = 1e-21 Identities = 48/119 (40%), Positives = 73/119 (61%) Frame = +1 Query: 208 KDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKE 387 +++ + ++ GRLH N LM+EL KVI K AP +L++D TG N Q + Sbjct: 182 QNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDENAPTHSILIIDAITGQNTYNQIEY 241 Query: 388 FNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 FNDV +TG I+TKLDG+A+ G +V V + +PV F+G+GE +EDL+ F+ F ++ Sbjct: 242 FNDVTNLTGLIVTKLDGSAKAGVLVGAVQKFNLPVYFIGIGEKIEDLKIFNRHDFSRSL 300 Score = 47.8 bits (112), Expect = 2e-05 Identities = 26/69 (37%), Positives = 39/69 (56%) Frame = +3 Query: 33 FKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREG 212 + EG KV +AA DTFRAAA +QL W R + ++I A SV +A++ ++ Sbjct: 125 YSAEGKKVAVAACDTFRAAAINQLSSWVHRANA-LLITGKASADPASVAYRAIEESIKQN 183 Query: 213 FDIVLCDTS 239 DI+ DT+ Sbjct: 184 IDILFIDTA 192
>FTSY_BUCAP (Q8KA77) Cell division protein ftsY homolog| Length = 351 Score = 100 bits (250), Expect = 2e-21 Identities = 45/120 (37%), Positives = 77/120 (64%) Frame = +1 Query: 208 KDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKE 387 K + + + GRLH L+EEL +VI K AP+EI+L++D G N ++Q + Sbjct: 230 KKIDVLIIDTAGRLHNKLHLLEELKKMVRVIKKLNLSAPHEIMLIIDACNGQNTIKQTEM 289 Query: 388 FNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAIF 567 F+ + +TG ++TKLDGTA+GG + S+ ++ IP++++G+GE DL F++ F+++IF Sbjct: 290 FHKAINLTGLVITKLDGTAKGGVIFSLANQFLIPIRYIGIGEKTTDLVVFNSNDFIKSIF 349 Score = 45.4 bits (106), Expect = 1e-04 Identities = 28/81 (34%), Positives = 41/81 (50%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKR 197 K ++K G V++AA DTFRAA +QL+I +R VI + SV AVK Sbjct: 168 KLAKKYKLAGKSVMLAAADTFRAAGIEQLQILGKRNNIP-VISQSSGSDPASVAFDAVKS 226 Query: 198 GKREGFDIVLCDTSXTTSYKL 260 + D+++ DT+ KL Sbjct: 227 AISKKIDVLIIDTAGRLHNKL 247
>SRP54_MYCPN (P75054) Signal recognition particle protein (Fifty-four homolog)| Length = 450 Score = 82.8 bits (203), Expect(2) = 4e-21 Identities = 44/108 (40%), Positives = 65/108 (60%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL TN LM+ELV+ K + P+EIL+V+DG +G ++ AKEF++ + +TGFI Sbjct: 191 GRLQTNQELMDELVAIKNELH------PDEILMVVDGLSGQEIINVAKEFHNRLKLTGFI 244 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 +TKLD AR G +S+ L +P+K +G E + L+ F E I Sbjct: 245 ITKLDSDARAGAALSLTSLLEVPIKLMGTSEKLTGLEQFHPERIASRI 292 Score = 38.1 bits (87), Expect(2) = 4e-21 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +3 Query: 51 KVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPS-VLSQAVKRGKREGFDIVL 227 K ++ A D +R AA DQL AE+T S K QAP +AVK K G ++ Sbjct: 130 KAMLVALDIYRPAAIDQLATLAEQTESVFFA---KGTQAPDQTTKEAVKTFKESGCQAII 186 Query: 228 CDTS 239 CDT+ Sbjct: 187 CDTA 190
>FTSY_BUCBP (Q89B28) Cell division protein ftsY homolog| Length = 397 Score = 99.4 bits (246), Expect = 7e-21 Identities = 49/123 (39%), Positives = 73/123 (59%) Frame = +1 Query: 196 VGSVKDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQ 375 + +K + + + GRLH LMEEL K+VI K E +LVLD G N ++ Sbjct: 268 IAKLKCIDILIIDTAGRLHNKNNLMEELKKIKRVIHKIDSTISQETMLVLDACIGQNSIK 327 Query: 376 QAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 555 Q K F++ + +TG ++TKLD TA+GG + S+ E IPV+++ GE ED+Q F++ FV Sbjct: 328 QVKIFHESLNVTGLVITKLDSTAKGGVIFSIAQEFLIPVRYISFGEDFEDIQVFNSNIFV 387 Query: 556 EAI 564 AI Sbjct: 388 NAI 390 Score = 57.0 bits (136), Expect = 4e-08 Identities = 32/77 (41%), Positives = 46/77 (59%) Frame = +3 Query: 9 LARKTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQA 188 L K +K +G V++AAGDTFRAAA DQL++W E S VI + + SV+ A Sbjct: 207 LIGKLAKNYKKKGKSVILAAGDTFRAAAIDQLKLWGE-INSVSVITREIGSDPASVVYDA 265 Query: 189 VKRGKREGFDIVLCDTS 239 +K K + DI++ DT+ Sbjct: 266 IKIAKLKCIDILIIDTA 282
>SRP54_ECOLI (P0AGD7) Signal recognition particle protein (Fifty-four homolog)| (p48) Length = 453 Score = 80.9 bits (198), Expect(2) = 8e-21 Identities = 45/108 (41%), Positives = 63/108 (58%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRLH + +M+E+ K+V A P E L V+D TG + AK FN+ + +TG + Sbjct: 193 GRLHVDEAMMDEI---KQVHASI---NPVETLFVVDAMTGQDAANTAKAFNEALPLTGVV 246 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 LTK+DG ARGG +S+ G P+KF+GVGE E L+PF + I Sbjct: 247 LTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294 Score = 38.9 bits (89), Expect(2) = 8e-21 Identities = 21/63 (33%), Positives = 37/63 (58%) Frame = +3 Query: 51 KVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREGFDIVLC 230 KVL+ + D +R AA QLE AE+ G + +D + +++ A+K K + +D++L Sbjct: 131 KVLVVSADVYRPAAIKQLETLAEQVGVDF-FPSDVGQKPVDIVNAALKEAKLKFYDVLLV 189 Query: 231 DTS 239 DT+ Sbjct: 190 DTA 192
>SRP54_ECOL6 (P0AGD8) Signal recognition particle protein (Fifty-four homolog)| Length = 453 Score = 80.9 bits (198), Expect(2) = 8e-21 Identities = 45/108 (41%), Positives = 63/108 (58%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRLH + +M+E+ K+V A P E L V+D TG + AK FN+ + +TG + Sbjct: 193 GRLHVDEAMMDEI---KQVHASI---NPVETLFVVDAMTGQDAANTAKAFNEALPLTGVV 246 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 LTK+DG ARGG +S+ G P+KF+GVGE E L+PF + I Sbjct: 247 LTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294 Score = 38.9 bits (89), Expect(2) = 8e-21 Identities = 21/63 (33%), Positives = 37/63 (58%) Frame = +3 Query: 51 KVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREGFDIVLC 230 KVL+ + D +R AA QLE AE+ G + +D + +++ A+K K + +D++L Sbjct: 131 KVLVVSADVYRPAAIKQLETLAEQVGVDF-FPSDVGQKPVDIVNAALKEAKLKFYDVLLV 189 Query: 231 DTS 239 DT+ Sbjct: 190 DTA 192
>SRP54_ECO57 (P0AGD9) Signal recognition particle protein (Fifty-four homolog)| Length = 453 Score = 80.9 bits (198), Expect(2) = 8e-21 Identities = 45/108 (41%), Positives = 63/108 (58%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRLH + +M+E+ K+V A P E L V+D TG + AK FN+ + +TG + Sbjct: 193 GRLHVDEAMMDEI---KQVHASI---NPVETLFVVDAMTGQDAANTAKAFNEALPLTGVV 246 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 LTK+DG ARGG +S+ G P+KF+GVGE E L+PF + I Sbjct: 247 LTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294 Score = 38.9 bits (89), Expect(2) = 8e-21 Identities = 21/63 (33%), Positives = 37/63 (58%) Frame = +3 Query: 51 KVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREGFDIVLC 230 KVL+ + D +R AA QLE AE+ G + +D + +++ A+K K + +D++L Sbjct: 131 KVLVVSADVYRPAAIKQLETLAEQVGVDF-FPSDVGQKPVDIVNAALKEAKLKFYDVLLV 189 Query: 231 DTS 239 DT+ Sbjct: 190 DTA 192
>DOCK_SULAC (P27414) Probable signal recognition particle protein (Docking| protein) (P41) Length = 369 Score = 79.7 bits (195), Expect(2) = 1e-20 Identities = 46/109 (42%), Positives = 67/109 (61%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GR+H + L+EEL K+V+ A P+ +L+LD G + L+QA+ F + VG I Sbjct: 265 GRMHIDSDLVEEL---KRVLRIA---KPDFRILILDSLAGSDALEQARHFENNVGYDAVI 318 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAIF 567 LTK+D A+GG +S+ EL PV ++GVG+ +DL PF + FVE IF Sbjct: 319 LTKVDADAKGGIALSLAYELKKPVVYMGVGQNYDDLIPFSPDWFVERIF 367 Score = 39.7 bits (91), Expect(2) = 1e-20 Identities = 25/74 (33%), Positives = 35/74 (47%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKR 197 K K ++AA DTFRAAA++QL A + ++ I A SV A+ Sbjct: 192 KVVNMLKKNNLSTIIAASDTFRAAAQEQLAYHASKLEVQL-IRGKYGADPASVAFDAISF 250 Query: 198 GKREGFDIVLCDTS 239 K D+VL DT+ Sbjct: 251 AKSRNIDVVLIDTA 264
>FTSY_HELPY (O25458) Cell division protein ftsY homolog| Length = 293 Score = 95.9 bits (237), Expect = 7e-20 Identities = 48/117 (41%), Positives = 73/117 (62%) Frame = +1 Query: 208 KDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKE 387 K++ ++ GRLH L EL + +K L AP L+LDGT G + L QAK Sbjct: 167 KNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKI 226 Query: 388 FNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVE 558 F++ + + G I+TKLDGT++GG ++SV+ EL +P+ ++G+GE +DL FD E F+E Sbjct: 227 FHETLALDGVIMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIE 283 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Frame = +3 Query: 51 KVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLS-QAVKRGKREGFDIVL 227 K L+ AGDTFRAAA QL++W E+ +++ + K+ PS L+ ++ + D V Sbjct: 116 KALLGAGDTFRAAAVKQLQLWGEKLNIQVI--SAKEGSDPSSLAYNTIESAIAKNIDEVF 173 Query: 228 CDTS 239 DT+ Sbjct: 174 IDTA 177
>SRP54_ENTHI (O15821) Signal recognition particle 54 kDa protein (SRP54)| Length = 487 Score = 72.8 bits (177), Expect(2) = 8e-20 Identities = 44/118 (37%), Positives = 63/118 (53%) Frame = +1 Query: 211 DLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEF 390 D+IL V GR + L +E+ S + I P+ I+ V+DG G QAK F Sbjct: 185 DIIL--VDTSGRHKQDKELFKEMQSVRDAIK------PDSIIFVMDGAIGQAAFGQAKAF 236 Query: 391 NDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 D V + I+TKLDG + GG +S V P+ F+G GE V +++ FDAE+FV + Sbjct: 237 KDAVEVGSVIITKLDGHSNGGGALSAVAATKSPIIFIGTGEKVNEIEEFDAESFVRQL 294 Score = 43.5 bits (101), Expect(2) = 8e-20 Identities = 25/69 (36%), Positives = 39/69 (56%) Frame = +3 Query: 33 FKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREG 212 +KN G K + DTFRA A +QL++ A+R G +++ V S+ V+ ++E Sbjct: 125 YKNRGYKPAVVGADTFRAGAYEQLQMNAKRAGVPF-FGIKEESDPVKVASEGVRTFRKEK 183 Query: 213 FDIVLCDTS 239 DI+L DTS Sbjct: 184 NDIILVDTS 192
>FTSY_HELPJ (Q9ZL80) Cell division protein ftsY homolog| Length = 293 Score = 94.7 bits (234), Expect = 2e-19 Identities = 48/117 (41%), Positives = 72/117 (61%) Frame = +1 Query: 208 KDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKE 387 K++ ++ GRLH L EL +K L AP L+LDGT G + L QAK Sbjct: 167 KNIDEVFIDTAGRLHNQTNLKNELSKIAHTCSKVLKDAPFYKFLILDGTQGSSGLTQAKI 226 Query: 388 FNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVE 558 F++ + + G I+TKLDGT++GG ++SV+ EL +P+ ++G+GE +DL FD E F+E Sbjct: 227 FHETLALDGVIMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIE 283 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Frame = +3 Query: 51 KVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLS-QAVKRGKREGFDIVL 227 K L+ AGDTFRAAA QL++W E+ +++ + K+ PS L+ ++ + D V Sbjct: 116 KALLGAGDTFRAAAVKQLQLWGEKLNVQVI--SAKEGSDPSSLAYNTIESAIAKNIDEVF 173 Query: 228 CDTS 239 DT+ Sbjct: 174 IDTA 177
>SRP54_MYCMY (Q01442) Signal recognition particle protein (Fifty-four homolog)| Length = 447 Score = 80.9 bits (198), Expect(2) = 2e-19 Identities = 43/99 (43%), Positives = 61/99 (61%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL + LM+EL + KK + PNEILLV+DG +G ++ EFND + ++G + Sbjct: 193 GRLQVDQVLMKELDNLKKKTS------PNEILLVVDGMSGQEIINVTNEFNDKLKLSGVV 246 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPF 537 +TKLDG ARGG +S+ +P+KF+G GEG L F Sbjct: 247 VTKLDGDARGGATLSISYLTKLPIKFIGEGEGYNALAAF 285 Score = 34.3 bits (77), Expect(2) = 2e-19 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +3 Query: 36 KNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAP-SVLSQAVKRGKREG 212 K KVL+ D +R A +QL ++T +++ +K Q P QA++ K Sbjct: 127 KKNKKKVLLVGLDIYRPGAIEQLVQLGQKTNTQVF---EKGKQDPVKTAEQALEYAKENN 183 Query: 213 FDIVLCDTS 239 FD+V+ DT+ Sbjct: 184 FDVVILDTA 192
>SRP54_HAEIN (P44518) Signal recognition particle protein (Fifty-four homolog)| Length = 462 Score = 79.3 bits (194), Expect(2) = 4e-19 Identities = 45/108 (41%), Positives = 62/108 (57%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRLH + +M+E+ K + AL P E L +D TG + AK FN+ + +TG I Sbjct: 193 GRLHVDTEMMDEI----KQVHAALN--PIETLFTVDAMTGQDAANTAKAFNEALPLTGVI 246 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 LTK+DG ARGG +S+ G P+KF+GVGE E L+PF + I Sbjct: 247 LTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294 Score = 34.7 bits (78), Expect(2) = 4e-19 Identities = 19/63 (30%), Positives = 33/63 (52%) Frame = +3 Query: 51 KVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREGFDIVLC 230 KVL+ + D +R AA QLE A+ G + +D K + A+ K + +D+++ Sbjct: 131 KVLVVSADVYRPAAIKQLETLAQSVGVDF-FPSDVKQNPVDIAKSALADAKLKFYDVLIV 189 Query: 231 DTS 239 DT+ Sbjct: 190 DTA 192
>SRP54_THEAC (Q9HKT0) Signal recognition 54 kDa protein (SRP54)| Length = 456 Score = 92.8 bits (229), Expect = 6e-19 Identities = 44/120 (36%), Positives = 75/120 (62%) Frame = +1 Query: 205 VKDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAK 384 +KD+ + + GR + L +E+ K+ +A P+E+L+++D T G +AK Sbjct: 175 LKDVAVKIIDTSGRDSMDAELFDEIRRIKEAVA------PDEVLMIIDATMGQQAGPEAK 228 Query: 385 EFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 FND +G+TG I+TK+DGTA+GG +S V E+ +P+ F+G GE ++DL+ FD + F+ + Sbjct: 229 AFNDAIGVTGIIITKMDGTAKGGGALSAVAEIHVPIYFIGTGEHMDDLEVFDPKKFLSRL 288
>SRP54_METJA (Q57565) Signal recognition 54 kDa protein (SRP54)| Length = 451 Score = 91.7 bits (226), Expect = 1e-18 Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 1/109 (0%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITG-F 417 GR GL+EE+ K++ P+EI+LV+DGT G QAK F + VG G Sbjct: 191 GRHKEEKGLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSI 244 Query: 418 ILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 I+TKLDG+A+GG +S V E P+KF+G+GEG++DL+PFD + F+ + Sbjct: 245 IVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRL 293
>SRP54_YEAST (P20424) Signal recognition particle 54 kDa protein homolog (SRP54)| Length = 541 Score = 73.6 bits (179), Expect(2) = 2e-18 Identities = 39/115 (33%), Positives = 59/115 (51%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 + V GR H L +E++ VI PN+ ++VLD + G QQ+K F + Sbjct: 194 IIIVDTSGRHHQEEELFQEMIEISNVIK------PNQTIMVLDASIGQAAEQQSKAFKES 247 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 ILTK+DG ARGG +S V P+ F+G GE + DL+ F ++F+ + Sbjct: 248 SDFGAIILTKMDGHARGGGAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFISKL 302 Score = 38.1 bits (87), Expect(2) = 2e-18 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 5/74 (6%) Frame = +3 Query: 33 FKNEGAKVLMAAGDTFRAAARDQLEIWAERT-----GSEIVIDNDKKAQAPSVLSQAVKR 197 + G KV + DTFRA A DQL+ A R GS D K A+ + + + Sbjct: 133 YSKRGFKVGLVCADTFRAGAFDQLKQNAIRARIPFYGSYTETDPAKVAE------EGINK 186 Query: 198 GKREGFDIVLCDTS 239 K+E FDI++ DTS Sbjct: 187 FKKEKFDIIIVDTS 200
>SRP54_BUCAI (P57473) Signal recognition particle protein (Fifty-four homolog)| Length = 451 Score = 72.4 bits (176), Expect(2) = 3e-18 Identities = 42/108 (38%), Positives = 63/108 (58%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRLH + +M E+ + VI+KA+ E LL++D G + + AK FN+ + I+G I Sbjct: 193 GRLHIDKKMMNEIQQIQ-VISKAI-----ETLLIVDSMMGQDAINMAKIFNNDLLISGII 246 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 LTK DG +R G +S+ G P+KF+G GE + L+PF E + I Sbjct: 247 LTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADRI 294 Score = 38.9 bits (89), Expect(2) = 3e-18 Identities = 20/63 (31%), Positives = 39/63 (61%) Frame = +3 Query: 51 KVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREGFDIVLC 230 K+L+ + DT+RAAA +QL+I +++ + ++DK + A+K K + +D++L Sbjct: 131 KILITSTDTYRAAAIEQLKILSDQIEIDF-FESDKHHTPIEITKNAIKYAKLKLYDVLLI 189 Query: 231 DTS 239 DT+ Sbjct: 190 DTA 192
>SRP54_PYRKO (Q5JJC8) Signal recognition 54 kDa protein (SRP54)| Length = 448 Score = 87.4 bits (215), Expect = 3e-17 Identities = 46/119 (38%), Positives = 67/119 (56%) Frame = +1 Query: 208 KDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKE 387 K + + V GR GL+EE+ + I P+E++LV+DGT G QA Sbjct: 181 KGVDVIIVDSAGRHKEEKGLIEEMRQISEAIK------PHEVILVIDGTIGQQAYNQAMA 234 Query: 388 FNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 F + I I+TKLDG+A+GG +S V G P+KF+G GE ++DL+PFD + FV + Sbjct: 235 FKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGERIDDLEPFDPKRFVSRL 293
>SRP54_GEOCY (Q8MZJ6) Signal recognition particle 54 kDa protein (SRP54)| Length = 499 Score = 70.5 bits (171), Expect(2) = 3e-17 Identities = 37/108 (34%), Positives = 58/108 (53%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GR L EE++ + I P+ I+ V+DGT G QA+ F + V + I Sbjct: 192 GRHKQEESLFEEMLQVSQAID------PDNIIFVMDGTIGQACESQARAFKEKVDVASVI 245 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 +TKLDG A+GG +S V P+ F+G GE +++++PF + FV + Sbjct: 246 VTKLDGHAKGGGALSAVAATRSPIIFIGTGEHIDEMEPFKTKPFVSKL 293 Score = 37.4 bits (85), Expect(2) = 3e-17 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQ-AVK 194 K ++ +G K + DTFRA A DQL+ T + + P V++Q V+ Sbjct: 119 KLAYHYQKKGWKTCLVCADTFRAGAFDQLK--QNATKARVPFYGSYTEMDPVVIAQEGVE 176 Query: 195 RGKREGFDIVLCDTS 239 + K + F++++ DTS Sbjct: 177 KFKEDSFEVIIVDTS 191
>SRP54_RAT (Q6AYB5) Signal recognition particle 54 kDa protein (SRP54)| Length = 504 Score = 68.9 bits (167), Expect(2) = 5e-17 Identities = 38/115 (33%), Positives = 57/115 (49%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 + V GR L EE++ I P+ I+ V+D + G QAK F D Sbjct: 186 IIIVDTSGRHKQEDSLFEEMLQVSNAIQ------PDNIVYVMDASIGQACEAQAKAFKDK 239 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 V + I+TKLDG A+GG +S V P+ F+G GE ++D +PF + F+ + Sbjct: 240 VDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 294 Score = 38.1 bits (87), Expect(2) = 5e-17 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = +3 Query: 33 FKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVL-SQAVKRGKRE 209 ++ +G K + DTFRA A DQL+ T + I P ++ S+ V++ K E Sbjct: 125 YQRKGWKTCLICADTFRAGAFDQLK--QNATKARIPFYGSYTEMDPVIIASEGVEKFKNE 182 Query: 210 GFDIVLCDTS 239 F+I++ DTS Sbjct: 183 NFEIIIVDTS 192
>SRP54_MOUSE (P14576) Signal recognition particle 54 kDa protein (SRP54)| Length = 504 Score = 68.9 bits (167), Expect(2) = 5e-17 Identities = 38/115 (33%), Positives = 57/115 (49%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 + V GR L EE++ I P+ I+ V+D + G QAK F D Sbjct: 186 IIIVDTSGRHKQEDSLFEEMLQVSNAIQ------PDNIVYVMDASIGQACEAQAKAFKDK 239 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 V + I+TKLDG A+GG +S V P+ F+G GE ++D +PF + F+ + Sbjct: 240 VDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 294 Score = 38.1 bits (87), Expect(2) = 5e-17 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = +3 Query: 33 FKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVL-SQAVKRGKRE 209 ++ +G K + DTFRA A DQL+ T + I P ++ S+ V++ K E Sbjct: 125 YQRKGWKTCLICADTFRAGAFDQLK--QNATKARIPFYGSYTEMDPVIIASEGVEKFKNE 182 Query: 210 GFDIVLCDTS 239 F+I++ DTS Sbjct: 183 NFEIIIVDTS 192
>SRP54_THEAQ (O07347) Signal recognition particle protein (Fifty-four homolog)| Length = 429 Score = 86.7 bits (213), Expect = 5e-17 Identities = 52/113 (46%), Positives = 66/113 (58%) Frame = +1 Query: 208 KDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKE 387 +DLIL V GRL + LM EL K+V+ P+E+LLVLD TG L A+ Sbjct: 180 RDLIL--VDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARA 231 Query: 388 FNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAE 546 F++ VG+TG +LTKLDG ARGG +S G P+ F GV E E L+PF E Sbjct: 232 FDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPE 284
>SRP54_PONPY (Q5R4R6) Signal recognition particle 54 kDa protein (SRP54)| Length = 504 Score = 68.6 bits (166), Expect(2) = 6e-17 Identities = 38/115 (33%), Positives = 57/115 (49%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 + V GR L EE++ I P+ I+ V+D + G QAK F D Sbjct: 186 IIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDK 239 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 V + I+TKLDG A+GG +S V P+ F+G GE ++D +PF + F+ + Sbjct: 240 VDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 294 Score = 38.1 bits (87), Expect(2) = 6e-17 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = +3 Query: 33 FKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVL-SQAVKRGKRE 209 ++ +G K + DTFRA A DQL+ T + I P ++ S+ V++ K E Sbjct: 125 YQRKGWKTCLICADTFRAGAFDQLK--QNATKARIPFYGSYTEMDPVIIASEGVEKFKNE 182 Query: 210 GFDIVLCDTS 239 F+I++ DTS Sbjct: 183 NFEIIIVDTS 192
>SRP54_MACFA (Q4R965) Signal recognition particle 54 kDa protein (SRP54)| Length = 504 Score = 68.6 bits (166), Expect(2) = 6e-17 Identities = 38/115 (33%), Positives = 57/115 (49%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 + V GR L EE++ I P+ I+ V+D + G QAK F D Sbjct: 186 IIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDK 239 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 V + I+TKLDG A+GG +S V P+ F+G GE ++D +PF + F+ + Sbjct: 240 VDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 294 Score = 38.1 bits (87), Expect(2) = 6e-17 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = +3 Query: 33 FKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVL-SQAVKRGKRE 209 ++ +G K + DTFRA A DQL+ T + I P ++ S+ V++ K E Sbjct: 125 YQRKGWKTCLICADTFRAGAFDQLK--QNATKARIPFYGSYTEMDPVIIASEGVEKFKNE 182 Query: 210 GFDIVLCDTS 239 F+I++ DTS Sbjct: 183 NFEIIIVDTS 192
>SRP54_HUMAN (P61011) Signal recognition particle 54 kDa protein (SRP54)| Length = 504 Score = 68.6 bits (166), Expect(2) = 6e-17 Identities = 38/115 (33%), Positives = 57/115 (49%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 + V GR L EE++ I P+ I+ V+D + G QAK F D Sbjct: 186 IIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDK 239 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 V + I+TKLDG A+GG +S V P+ F+G GE ++D +PF + F+ + Sbjct: 240 VDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 294 Score = 38.1 bits (87), Expect(2) = 6e-17 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = +3 Query: 33 FKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVL-SQAVKRGKRE 209 ++ +G K + DTFRA A DQL+ T + I P ++ S+ V++ K E Sbjct: 125 YQRKGWKTCLICADTFRAGAFDQLK--QNATKARIPFYGSYTEMDPVIIASEGVEKFKNE 182 Query: 210 GFDIVLCDTS 239 F+I++ DTS Sbjct: 183 NFEIIIVDTS 192
>SRP54_CANFA (P61010) Signal recognition particle 54 kDa protein (SRP54)| Length = 504 Score = 68.6 bits (166), Expect(2) = 6e-17 Identities = 38/115 (33%), Positives = 57/115 (49%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 + V GR L EE++ I P+ I+ V+D + G QAK F D Sbjct: 186 IIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDK 239 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 V + I+TKLDG A+GG +S V P+ F+G GE ++D +PF + F+ + Sbjct: 240 VDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 294 Score = 38.1 bits (87), Expect(2) = 6e-17 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = +3 Query: 33 FKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVL-SQAVKRGKRE 209 ++ +G K + DTFRA A DQL+ T + I P ++ S+ V++ K E Sbjct: 125 YQRKGWKTCLICADTFRAGAFDQLK--QNATKARIPFYGSYTEMDPVIIASEGVEKFKNE 182 Query: 210 GFDIVLCDTS 239 F+I++ DTS Sbjct: 183 NFEIIIVDTS 192
>SRP54_BUCAP (Q8K9F7) Signal recognition particle protein (Fifty-four homolog)| Length = 450 Score = 72.8 bits (177), Expect(2) = 1e-16 Identities = 38/115 (33%), Positives = 61/115 (53%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 L + GRLH N +M E+ + + + P E LL++D G + + AK+F+ Sbjct: 186 LLLIDTAGRLHINTEMMNEINTIQNI------SKPIETLLIVDSMMGQDAINIAKKFSAS 239 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 + I+G ++TK D AR G +S+ G P+KF+G GE + L+PF E + I Sbjct: 240 LSISGIVITKTDSDARSGVALSIRHITGKPIKFIGTGEKLHQLEPFHPERIADRI 294 Score = 33.1 bits (74), Expect(2) = 1e-16 Identities = 17/63 (26%), Positives = 37/63 (58%) Frame = +3 Query: 51 KVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREGFDIVLC 230 K+L + D +RAAA QL+I +++ + + +D ++ +A++ K + +D++L Sbjct: 131 KILTVSTDIYRAAAIKQLQILSDQVKIDFYL-SDTTQTPINITKEAIEHAKLKLYDLLLI 189 Query: 231 DTS 239 DT+ Sbjct: 190 DTA 192
>SRP54_PYRFU (Q8U070) Signal recognition 54 kDa protein (SRP54)| Length = 443 Score = 85.1 bits (209), Expect = 1e-16 Identities = 45/119 (37%), Positives = 66/119 (55%) Frame = +1 Query: 208 KDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKE 387 K + + V GR + L+EE+ VI P+E++LV+DGT G QA Sbjct: 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIH------PHEVILVIDGTIGQQAYNQALA 234 Query: 388 FNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 F + I I+TKLDG+A+GG +S V G P+KF+G GE ++D++PFD FV + Sbjct: 235 FKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRL 293 Score = 34.3 bits (77), Expect = 0.27 Identities = 22/69 (31%), Positives = 34/69 (49%) Frame = +3 Query: 33 FKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREG 212 F+ G KV + DT+R A QL +R E V N ++ A + + V K +G Sbjct: 124 FQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIE-VFGNPQEKDAIKLAKEGVDYFKSKG 182 Query: 213 FDIVLCDTS 239 DI++ DT+ Sbjct: 183 VDIIIVDTA 191
>SRP54_THEVO (Q979Y8) Signal recognition 54 kDa protein (SRP54)| Length = 455 Score = 84.7 bits (208), Expect = 2e-16 Identities = 41/120 (34%), Positives = 73/120 (60%) Frame = +1 Query: 205 VKDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAK 384 +KD + + GR + L+EE+ K+ + P+++L+V+D T G ++K Sbjct: 175 LKDAQVKIIDTSGRDSLDSDLIEEIRRIKEAVK------PDQVLMVIDATMGQQAGPESK 228 Query: 385 EFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 ND VG+TG I+TK+DGTA+GG +S V ++ +P+ F+G GE ++D++ FD + F+ + Sbjct: 229 AINDAVGVTGIIITKMDGTAKGGGALSAVAKMRVPIYFIGTGEHMDDMEIFDPKKFLSRL 288
>SRP54_METTH (O27376) Signal recognition 54 kDa protein (SRP54)| Length = 442 Score = 84.7 bits (208), Expect = 2e-16 Identities = 45/119 (37%), Positives = 67/119 (56%) Frame = +1 Query: 208 KDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKE 387 KD+I+F GR L+ E+ ++ P+E +LV+DGT G +QA Sbjct: 180 KDVIIFDT--AGRHKEEKDLLREMEELSAIVE------PHEAILVIDGTIGQQAREQALA 231 Query: 388 FNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 F I I+TKLDG+A+GG +S V E+G P+KF+G GE ++DL+ FD E F+ + Sbjct: 232 FRKATDIGSIIVTKLDGSAKGGGALSAVAEIGAPIKFIGTGERIDDLEVFDPERFISRL 290
>SRP54_PYRHO (O59307) Signal recognition 54 kDa protein (SRP54)| Length = 443 Score = 84.7 bits (208), Expect = 2e-16 Identities = 46/119 (38%), Positives = 70/119 (58%) Frame = +1 Query: 208 KDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKE 387 +D+ L V GR L+EE+ ++I++ + P+E++LV+DGT G QA Sbjct: 181 RDVDLIIVDTAGRHKEEKDLIEEM----RMISEEI--RPHEVILVIDGTIGQQAYNQALA 234 Query: 388 FNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 F + I I+TKLD +A+GG +S V G P+KF+GVGE ++DL+PFD FV + Sbjct: 235 FKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGVGEKIDDLEPFDPARFVSRL 293
>SRP54_SYNY3 (P74214) Signal recognition particle protein (Fifty-four homolog)| Length = 482 Score = 83.6 bits (205), Expect = 4e-16 Identities = 47/99 (47%), Positives = 59/99 (59%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL + +M EL K+V+ P++ LLV+D TG F++ +GITG I Sbjct: 192 GRLQIDPQMMAELAEIKQVVK------PDDTLLVVDAMTGQEAANLTHTFHEQIGITGAI 245 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPF 537 LTKLDG RGG +SV G P+KFVGVGE VE LQPF Sbjct: 246 LTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPF 284
>SRP54_METMA (Q8PXF3) Signal recognition 54 kDa protein (SRP54)| Length = 443 Score = 82.8 bits (203), Expect = 7e-16 Identities = 40/81 (49%), Positives = 52/81 (64%) Frame = +1 Query: 322 PNEILLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFV 501 P+ +VLD G QQA FND VGITG I+TKLDGTA+GG +S V E P+ F+ Sbjct: 208 PDHKFMVLDAGIGQQASQQAHAFNDSVGITGVIITKLDGTAKGGGALSAVSETKAPIAFI 267 Query: 502 GVGEGVEDLQPFDAEAFVEAI 564 GVGE ED + F+A+ F+ + Sbjct: 268 GVGETPEDFEKFEADRFISRL 288
>SRP54_METAC (Q8THD0) Signal recognition 54 kDa protein (SRP54)| Length = 440 Score = 82.8 bits (203), Expect = 7e-16 Identities = 40/81 (49%), Positives = 52/81 (64%) Frame = +1 Query: 322 PNEILLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFV 501 P+ +VLD G QQA FND VGITG I+TKLDGTA+GG +S V E P+ F+ Sbjct: 208 PDHKFMVLDAGIGQQASQQAHAFNDSVGITGVIITKLDGTAKGGGALSAVSETKAPIAFI 267 Query: 502 GVGEGVEDLQPFDAEAFVEAI 564 GVGE ED + F+A+ F+ + Sbjct: 268 GVGETPEDFEKFEADRFISRL 288
>SRP54_ARCFU (O29633) Signal recognition 54 kDa protein (SRP54)| Length = 433 Score = 82.4 bits (202), Expect = 9e-16 Identities = 44/120 (36%), Positives = 67/120 (55%) Frame = +1 Query: 205 VKDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAK 384 +KD + + GR L++E++ +V P+ LLVLD G +QA+ Sbjct: 171 LKDHDMIIIDTAGRHALEDELIDEMIKIAEV------ARPDYKLLVLDAAIGQLASKQAQ 224 Query: 385 EFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 F++ +GI G I+TK DGTA+GG +S ++GIP+ F+G GE VED + FD FV + Sbjct: 225 AFHEAIGINGIIITKFDGTAKGGGALSAARQIGIPIAFIGTGEKVEDFERFDPAGFVSRL 284 Score = 36.6 bits (83), Expect = 0.054 Identities = 24/74 (32%), Positives = 39/74 (52%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKR 197 K FK+ G KV + A DT+R AA +QL AE G + +K A ++ A++ Sbjct: 112 KMAKYFKDRGMKVAVVAADTWRPAAYEQLRQLAEEYGITFYGEKGEK-DAVKIVKNALE- 169 Query: 198 GKREGFDIVLCDTS 239 K + D+++ DT+ Sbjct: 170 -KLKDHDMIIIDTA 182
>SRP54_SULTO (Q971S9) Signal recognition 54 kDa protein (SRP54)| Length = 445 Score = 66.2 bits (160), Expect(2) = 1e-15 Identities = 31/81 (38%), Positives = 48/81 (59%) Frame = +1 Query: 322 PNEILLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFV 501 P+E++LV+D + G A F+ I I+TK+DGTA+GG +S V G +KF+ Sbjct: 210 PDEVILVIDASIGQKAYDLASRFHQASPIGSIIVTKMDGTAKGGGALSAVAATGAAIKFI 269 Query: 502 GVGEGVEDLQPFDAEAFVEAI 564 G GE +++L+ F+ FV I Sbjct: 270 GTGEKLDELEVFNPRRFVSRI 290 Score = 35.8 bits (81), Expect(2) = 1e-15 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Frame = +3 Query: 33 FKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEI---VIDNDKKAQAPSVLSQAVKRGK 203 +K +G KV + A D +R AA DQL + G +I V A + + V++ Sbjct: 119 YKKKGYKVGLVAADVYRPAAYDQLV----QIGKQINVPVYGEPNNTDAVGIAKRGVEKFL 174 Query: 204 REGFDIVLCDTSXTTSY 254 E +DI++ DT+ Y Sbjct: 175 SEKYDIIIVDTAGRHGY 191
>SRP54_PYRAB (Q9V1E8) Signal recognition 54 kDa protein (SRP54)| Length = 443 Score = 81.3 bits (199), Expect = 2e-15 Identities = 45/119 (37%), Positives = 67/119 (56%) Frame = +1 Query: 208 KDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKE 387 K + L V GR L+EE+ ++I+ + P+E++LV+DGT G QA Sbjct: 181 KGVDLIIVDTAGRHKEEKDLIEEM----RMISNEIK--PHEVILVIDGTIGQQAYNQALA 234 Query: 388 FNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 F + I I+TKLD +A+GG +S V G P+KF+G GE ++DL+PFD FV + Sbjct: 235 FKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRL 293
>SR542_ARATH (P49966) Signal recognition particle 54 kDa protein 2 (SRP54)| Length = 495 Score = 65.5 bits (158), Expect(2) = 2e-15 Identities = 38/115 (33%), Positives = 61/115 (53%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 L V GR L EE+ + I++A P+ ++ V+D + G +QA+ F Sbjct: 186 LIIVDTSGRHKQQASLFEEM----RQISEATK--PDLVIFVMDSSIGQTAFEQARAFKQT 239 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 V + I+TK+DG A+GG +S V PV F+G GE +++ + FDA+ FV + Sbjct: 240 VAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRL 294 Score = 35.8 bits (81), Expect(2) = 2e-15 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Frame = +3 Query: 21 TCPRF----KNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAP-SVLSQ 185 TC ++ + +G K + DTFRA A DQL+ T S+I P + + Sbjct: 117 TCTKYAYYHQKKGYKPALVCADTFRAGAFDQLK--QNATKSKIPYYGSYTGSDPVKIAVE 174 Query: 186 AVKRGKREGFDIVLCDTS 239 V R K+E D+++ DTS Sbjct: 175 GVDRFKKENCDLIIVDTS 192
>SRP54_MYCGE (P47294) Signal recognition particle protein (Fifty-four homolog)| Length = 446 Score = 80.1 bits (196), Expect = 4e-15 Identities = 42/108 (38%), Positives = 65/108 (60%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL TN LM+ELVS K + P+EI++V+DG +G ++ A+ F+ + +TGFI Sbjct: 191 GRLQTNETLMDELVSVKNELN------PDEIIMVVDGLSGQEIINVAQTFHKRLKLTGFI 244 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 ++KLD AR G +S+ L +P+K +GV E ++ L+ F E I Sbjct: 245 ISKLDSDARAGAALSLASLLQVPIKLIGVSEKLDGLEQFHPERIANRI 292
>SRP54_METKA (Q8TUY9) Signal recognition 54 kDa protein (SRP54)| Length = 447 Score = 80.1 bits (196), Expect = 4e-15 Identities = 41/97 (42%), Positives = 62/97 (63%) Frame = +1 Query: 265 LMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGTA 444 L E+L+ + +A+ + P+E+LLVLD T G A+ F++ V +TG ++TKLD A Sbjct: 195 LSEDLIDELREMAERIE--PHEVLLVLDATVGQKAGDHAEAFHEAVQLTGVVITKLDTAA 252 Query: 445 RGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 555 +GG +S V G P+KFVG GE V+DL+ F+ +FV Sbjct: 253 KGGGALSAVARTGAPIKFVGTGERVDDLEEFNPRSFV 289
>SRP54_CANAL (O42816) Signal recognition particle 54 kDa protein homolog| Length = 556 Score = 60.8 bits (146), Expect(2) = 1e-14 Identities = 35/115 (30%), Positives = 54/115 (46%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 + V GR L E+V + + P + ++V+DG+ G QA+ F + Sbjct: 203 IIIVDTSGRHRQEEQLFTEMVQIGEAVQ------PTQTIMVMDGSIGQAAESQARAFKES 256 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 ILTK+DG A+GG +S V P+ F+G GE V DL+ F F+ + Sbjct: 257 SNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEHVGDLEIFKPTTFISKL 311 Score = 37.7 bits (86), Expect(2) = 1e-14 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%) Frame = +3 Query: 33 FKNEGAKVLMAAGDTFRAAARDQLEIWAERT-----GSEIVIDNDKKAQAPSVLSQAVKR 197 +K G KV + DTFRA A DQL+ A + GS + D K + + V++ Sbjct: 142 YKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSYLEPDPVK------IAFEGVQK 195 Query: 198 GKREGFDIVLCDTS 239 K+E FDI++ DTS Sbjct: 196 FKQEKFDIIIVDTS 209
>SRP54_YARLI (Q99150) Signal recognition particle 54 kDa protein homolog (SRP54)| Length = 536 Score = 61.2 bits (147), Expect(2) = 1e-14 Identities = 28/81 (34%), Positives = 44/81 (54%) Frame = +1 Query: 322 PNEILLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFV 501 P+ ++VLD + G Q++ F D ILTK+DG A+GG +S V P+ F+ Sbjct: 216 PDSTIMVLDASIGQAAEPQSRAFKDASDFGSIILTKMDGHAKGGGAISAVAATNTPIIFI 275 Query: 502 GVGEGVEDLQPFDAEAFVEAI 564 G GE + DL+ F + F+ + Sbjct: 276 GTGEHIHDLEAFSPKQFISKL 296 Score = 37.4 bits (85), Expect(2) = 1e-14 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Frame = +3 Query: 33 FKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAP-SVLSQAVKRGKRE 209 ++ G KV + DTFRA A DQL+ T ++I P +V ++ V + K+E Sbjct: 127 YQRRGFKVGLVCADTFRAGAFDQLK--QNATKAKIPFFGSYTETDPVAVAAEGVAKFKKE 184 Query: 210 GFDIVLCDTS 239 F+I++ DTS Sbjct: 185 KFEIIIVDTS 194
>SR541_ARATH (P37106) Signal recognition particle 54 kDa protein 1 (SRP54)| Length = 479 Score = 63.5 bits (153), Expect(2) = 2e-14 Identities = 37/115 (32%), Positives = 61/115 (53%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 L V GR L EE+ + +A+A P+ ++ V+D + G +QA+ F + Sbjct: 186 LIIVDTSGRHKQAASLFEEM----RQVAEATE--PDLVIFVMDSSIGQAAFEQAEAFKET 239 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 V + I+TK+DG A+GG +S V PV F+G GE +++ + FD + FV + Sbjct: 240 VSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294 Score = 34.7 bits (78), Expect(2) = 2e-14 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Frame = +3 Query: 21 TCPRF----KNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAP-SVLSQ 185 TC ++ + +G K + DTFRA A DQL+ T ++I P + + Sbjct: 117 TCTKYAYYHQKKGYKAALVCADTFRAGAFDQLK--QNATKAKIPFYGSYTESDPVKIAVE 174 Query: 186 AVKRGKREGFDIVLCDTS 239 V R K+E D+++ DTS Sbjct: 175 GVDRFKKEKCDLIIVDTS 192
>SRP54_STRMU (Q54431) Signal recognition particle protein (Fifty-four homolog)| Length = 516 Score = 77.0 bits (188), Expect = 4e-14 Identities = 43/99 (43%), Positives = 55/99 (55%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL + LM EL K + PNEILLV+D G A+EFN + +TG I Sbjct: 194 GRLQIDEKLMTELRDIKAL------ANPNEILLVVDSMIGQEAANVAREFNQQLEVTGVI 247 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPF 537 LTK+DG RGG +SV G P+KF G GE + D++ F Sbjct: 248 LTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETF 286
>SRP54_RICCN (Q92J55) Signal recognition particle protein (Fifty-four homolog)| Length = 449 Score = 76.3 bits (186), Expect = 6e-14 Identities = 42/121 (34%), Positives = 68/121 (56%) Frame = +1 Query: 202 SVKDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQA 381 S D++++ GR + +MEE ++ KK++ P E LLV+D TG + + A Sbjct: 183 SAYDVVIYDT--AGRTQIDKAMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTA 234 Query: 382 KEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEA 561 FN+ + I+G IL+++DG ++GG +SV P+KF+ GE + DL+ FDAE Sbjct: 235 SSFNEKLAISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASR 294 Query: 562 I 564 I Sbjct: 295 I 295 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAE--RTGSEIVIDNDKKAQAPSVLSQAV 191 K R +N+ KVL+ + DT+R AA++QL I A + S ++ +K ++ +A+ Sbjct: 121 KLALRLRNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSLPIVQGEKPL---DIVKRAI 177 Query: 192 KRGKREGFDIVLCDTSXTT 248 K +D+V+ DT+ T Sbjct: 178 AEAKISAYDVVIYDTAGRT 196
>SRP54_SCHPO (P21565) Signal recognition particle 54 kDa protein homolog (SRP54)| Length = 522 Score = 61.6 bits (148), Expect(2) = 7e-14 Identities = 33/108 (30%), Positives = 52/108 (48%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GR L E+V I P++ +++LD + G Q+K F + I Sbjct: 193 GRHQQEQELFAEMVEISDAIR------PDQTIMILDASIGQAAESQSKAFKETADFGAVI 246 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 +TKLDG A+GG +S V P+ F+G GE + DL+ F +F+ + Sbjct: 247 ITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISKL 294 Score = 34.7 bits (78), Expect(2) = 7e-14 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLS-QAVK 194 K ++ G K + A DTFRA A DQL+ A + + + P V++ + V Sbjct: 120 KLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIK--ARVPYFGSYTETDPVVIAKEGVD 177 Query: 195 RGKREGFDIVLCDTS 239 + K + FD+++ DTS Sbjct: 178 KFKNDRFDVIIVDTS 192
>SR542_HORVU (P49969) Signal recognition particle 54 kDa protein 2 (SRP54)| Length = 497 Score = 63.5 bits (153), Expect(2) = 7e-14 Identities = 37/115 (32%), Positives = 59/115 (51%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 L + GR L EE+ + +A+A P+ ++ V+DG+ G QA+ F Sbjct: 186 LIIIDTSGRHKQEAALFEEM----RQVAEATK--PDLVIFVMDGSIGQAAFDQAQAFKQS 239 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 + I+TKLDG A+GG +S V PV F+G GE +++ + FD + FV + Sbjct: 240 ASVGAVIITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEIFDVKPFVSRL 294 Score = 32.7 bits (73), Expect(2) = 7e-14 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Frame = +3 Query: 21 TCPRF----KNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAP-SVLSQ 185 TC ++ + +G K + DTFRA A DQL+ T ++I P + + Sbjct: 117 TCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLK--QNATKAKIPFYGSYMESDPVKIAVE 174 Query: 186 AVKRGKREGFDIVLCDTS 239 ++R ++E D+++ DTS Sbjct: 175 GLERFRKENSDLIIIDTS 192
>SR541_HORVU (P49968) Signal recognition particle 54 kDa protein 1 (SRP54)| Length = 497 Score = 63.5 bits (153), Expect(2) = 7e-14 Identities = 37/115 (32%), Positives = 59/115 (51%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 L + GR L EE+ + +A+A P+ ++ V+DG+ G QA+ F Sbjct: 186 LIIIDTSGRHKQEAALFEEM----RQVAEATK--PDLVIFVMDGSIGQAAFDQAQAFKQS 239 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 + I+TKLDG A+GG +S V PV F+G GE +++ + FD + FV + Sbjct: 240 ASVGAVIITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEIFDVKPFVSRL 294 Score = 32.7 bits (73), Expect(2) = 7e-14 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Frame = +3 Query: 21 TCPRF----KNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAP-SVLSQ 185 TC ++ + +G K + DTFRA A DQL+ T ++I P + + Sbjct: 117 TCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLK--QNATKAKIPFYGSYMESDPVKIAVE 174 Query: 186 AVKRGKREGFDIVLCDTS 239 ++R ++E D+++ DTS Sbjct: 175 GLERFRKENSDLIIIDTS 192
>SRP54_HELPJ (Q9ZK62) Signal recognition particle protein (Fifty-four homolog)| Length = 448 Score = 75.1 bits (183), Expect = 1e-13 Identities = 37/105 (35%), Positives = 63/105 (60%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL + LM+EL K+V+ P+E+L V D +G + ++ A FN+ +G++G + Sbjct: 185 GRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVSGVV 238 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 555 L+K D ++GG + + +LG+P++F+G GE + DL F E V Sbjct: 239 LSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFMPERIV 283
>SRP54_HELPY (P56005) Signal recognition particle protein (Fifty-four homolog)| Length = 448 Score = 74.7 bits (182), Expect = 2e-13 Identities = 36/105 (34%), Positives = 63/105 (60%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL + LM+EL K+++ P+E+L V D +G + ++ A FN+ +G++G + Sbjct: 185 GRLAIDKELMQELKEVKEILN------PHEVLYVADALSGQDGVKSANTFNEEIGVSGVV 238 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 555 L+K D ++GG + + +LG+P++F+G GE + DL F E V Sbjct: 239 LSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIV 283
>SR543_ARATH (P49967) Signal recognition particle 54 kDa protein 3 (SRP54)| Length = 495 Score = 62.0 bits (149), Expect(2) = 3e-13 Identities = 37/115 (32%), Positives = 59/115 (51%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 L V GR L EE+ + +A+A P+ ++ V+D + G QA+ F Sbjct: 186 LIIVDTSGRHKQEASLFEEM----RQVAEATK--PDLVIFVMDSSIGQAAFDQAQAFKQS 239 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 V + I+TK+DG A+GG +S V PV F+G GE +++ + FD + FV + Sbjct: 240 VAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294 Score = 32.3 bits (72), Expect(2) = 3e-13 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Frame = +3 Query: 21 TCPRF----KNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAP-SVLSQ 185 TC ++ + +G K + DTFRA A DQL+ T ++I P + + Sbjct: 117 TCTKYAYYHQKKGYKPALVCADTFRAGAFDQLK--QNATKAKIPFYGSYTESDPVKIAVE 174 Query: 186 AVKRGKREGFDIVLCDTS 239 V K+E D+++ DTS Sbjct: 175 GVDTFKKENCDLIIVDTS 192
>SRP54_ASPNG (Q00179) Signal recognition particle 54 kDa protein homolog| Length = 534 Score = 57.0 bits (136), Expect(2) = 3e-13 Identities = 28/81 (34%), Positives = 44/81 (54%) Frame = +1 Query: 322 PNEILLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFV 501 P++ +LVLD T G Q+ F I+TK DG A GG +S V P+ ++ Sbjct: 215 PDQTILVLDSTIGQAAEAQSSAFKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIYL 274 Query: 502 GVGEGVEDLQPFDAEAFVEAI 564 G GE + DL+ F+ +AF++ + Sbjct: 275 GTGEHLMDLERFEPKAFIQKL 295 Score = 37.0 bits (84), Expect(2) = 3e-13 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVL-SQAVK 194 K ++ G K + DTFRA A DQL+ T ++I P+++ ++ V Sbjct: 121 KLARHYQMRGFKTALVCADTFRAGAFDQLK--QNATKAKIPYYGSLTQTDPAIVAAEGVA 178 Query: 195 RGKREGFDIVLCDTS 239 + K+E F+I++ DTS Sbjct: 179 KFKKERFEIIIVDTS 193
>SR542_LYCES (P49972) Signal recognition particle 54 kDa protein 2 (SRP54)| Length = 499 Score = 61.6 bits (148), Expect(2) = 4e-13 Identities = 37/115 (32%), Positives = 59/115 (51%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 L V GR L EE+ + +A+A P+ ++ V+D + G QA+ F Sbjct: 186 LIIVDTSGRHKQEAALFEEM----RQVAEATK--PDLVIFVMDSSIGQAAFDQAQAFKQS 239 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 V + I+TK+DG A+GG +S V PV F+G GE +++ + FD + FV + Sbjct: 240 VAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294 Score = 32.0 bits (71), Expect(2) = 4e-13 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Frame = +3 Query: 21 TCPRF----KNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAP-SVLSQ 185 TC ++ + +G K + DTFRA A DQL+ T ++I P + Sbjct: 117 TCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK--QNATKAKIPFYGSYTESDPVKIAVD 174 Query: 186 AVKRGKREGFDIVLCDTS 239 V+ K+E D+++ DTS Sbjct: 175 GVETFKKENCDLIIVDTS 192
>SR543_HORVU (P49970) Signal recognition particle 54 kDa protein 3 (SRP54)| Length = 493 Score = 63.2 bits (152), Expect(2) = 4e-13 Identities = 38/112 (33%), Positives = 57/112 (50%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 L + GR L EE+ + +A+A P+ ++ V+DG+ G QA+ F Sbjct: 185 LIIIDTSGRHMQEAALFEEM----RQVAEATK--PDLVIFVMDGSIGQAAFDQAQAFKQS 238 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 555 + I+TKLDG A+GG +S V PV F+G GE ++D F+ E FV Sbjct: 239 ASVGAVIVTKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDDFDVFNVEPFV 290 Score = 30.4 bits (67), Expect(2) = 4e-13 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Frame = +3 Query: 21 TCPRF----KNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAP-SVLSQ 185 TC ++ + +G K + DTFRA A DQL+ T ++I P + + Sbjct: 116 TCTKYAHYHQRKGFKPSLVCADTFRAGAFDQLK--QNATKAKIPFYGSYMESDPVKIAVE 173 Query: 186 AVKRGKREGFDIVLCDTS 239 +++ ++E D+++ DTS Sbjct: 174 GLEKFRQEKSDLIIIDTS 191
>SRP54_HALVO (Q977V2) Signal recognition 54 kDa protein (SRP54)| Length = 465 Score = 73.2 bits (178), Expect = 5e-13 Identities = 39/121 (32%), Positives = 69/121 (57%) Frame = +1 Query: 202 SVKDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQA 381 + +D + V GR L++E+ + V+ P+ LLVLD G +QA Sbjct: 174 ATEDADVHIVDTAGRHALEDDLIDEIEEIEGVVQ------PDLNLLVLDAAIGQGAKEQA 227 Query: 382 KEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEA 561 ++F++ +GI G ++TKLDGTA+GG ++ V+E + F+G+GE V+D++ F+ F+ Sbjct: 228 QQFDESIGIGGVVITKLDGTAKGGGALTAVNETDSSIAFLGMGETVQDIERFEPNGFISR 287 Query: 562 I 564 + Sbjct: 288 L 288
>SR541_LYCES (P49971) Signal recognition particle 54 kDa protein 1 (SRP54)| Length = 496 Score = 58.9 bits (141), Expect(2) = 7e-13 Identities = 36/115 (31%), Positives = 59/115 (51%) Frame = +1 Query: 220 LFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDV 399 L V GR L EE+ + +++A P+ ++ V+D + G QA+ F Sbjct: 187 LIIVDTSGRHKQEAALFEEM----RQVSEAQK--PDLVIFVMDSSIGQAAFDQAQAFRQS 240 Query: 400 VGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 V + I+TK+DG A+GG +S V PV F+G GE +++ + FD + FV + Sbjct: 241 VAVGAVIVTKMDGHAKGGGALSRVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 295 Score = 33.9 bits (76), Expect(2) = 7e-13 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Frame = +3 Query: 21 TCPRF----KNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQA 188 TC ++ + G K + DTFRA A DQL+ A + + ++ + Sbjct: 117 TCTKYAYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSSYTESDPVKIAVDG 176 Query: 189 VKRGKREGFDIVLCDTS 239 V+ K+E D+++ DTS Sbjct: 177 VETFKKENCDLIIVDTS 193
>SRP54_MYCTU (P66844) Signal recognition particle protein (Fifty-four homolog)| Length = 525 Score = 72.0 bits (175), Expect = 1e-12 Identities = 40/101 (39%), Positives = 55/101 (54%) Frame = +1 Query: 262 GLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGT 441 G+ EEL++ I A+ P+E+L VLD G + + A F + VG TG LTKLDG Sbjct: 202 GIDEELMAQAAAIRDAIN--PDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGD 259 Query: 442 ARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 ARGG +SV + G+P+ F GE +ED F + I Sbjct: 260 ARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRI 300
>SRP54_MYCBO (P66845) Signal recognition particle protein (Fifty-four homolog)| Length = 525 Score = 72.0 bits (175), Expect = 1e-12 Identities = 40/101 (39%), Positives = 55/101 (54%) Frame = +1 Query: 262 GLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGT 441 G+ EEL++ I A+ P+E+L VLD G + + A F + VG TG LTKLDG Sbjct: 202 GIDEELMAQAAAIRDAIN--PDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGD 259 Query: 442 ARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 ARGG +SV + G+P+ F GE +ED F + I Sbjct: 260 ARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRI 300
>SRP54_RICPR (Q9ZDZ0) Signal recognition particle protein (Fifty-four homolog)| Length = 449 Score = 71.6 bits (174), Expect = 2e-12 Identities = 41/121 (33%), Positives = 69/121 (57%) Frame = +1 Query: 202 SVKDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQA 381 S D++++ GR+ + +MEE ++ KK++ P E LLV+D TG + + A Sbjct: 183 SAYDVVIYDT--AGRIQIDNVMMEEALAIKKILN------PTETLLVIDSMTGQDAVITA 234 Query: 382 KEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEA 561 K F++ + I+G IL+++DG +GG +SV P+KF+ GE + DL+ F+AE Sbjct: 235 KTFSEKLEISGLILSRIDGDTKGGAALSVKYFTQKPIKFLSSGEKLTDLEEFNAERLASR 294 Query: 562 I 564 I Sbjct: 295 I 295 Score = 38.5 bits (88), Expect = 0.014 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Frame = +3 Query: 18 KTCPRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTG--SEIVIDNDKKAQAPSVLSQAV 191 K R KN+ KVL+ + DT+R AA++QL I A S ++ +K ++ +A+ Sbjct: 121 KLALRLKNQNKKVLLVSLDTYRPAAQEQLAIIANSVNIDSLPIVKGEKPL---DIVKRAI 177 Query: 192 KRGKREGFDIVLCDTS 239 + +D+V+ DT+ Sbjct: 178 GEAQISAYDVVIYDTA 193
>SRP54_HALSA (Q9HMN5) Signal recognition 54 kDa protein (SRP54)| Length = 460 Score = 71.6 bits (174), Expect = 2e-12 Identities = 33/81 (40%), Positives = 53/81 (65%) Frame = +1 Query: 322 PNEILLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFV 501 P+ LLVLD G QQA++F+ +GI G +TKLDGTA+GG ++ V+E + F+ Sbjct: 208 PDRSLLVLDAAIGQGAKQQARQFDASIGIDGVAITKLDGTAKGGGSLTAVNETDSTIAFL 267 Query: 502 GVGEGVEDLQPFDAEAFVEAI 564 G GE V+D++ F+ ++F+ + Sbjct: 268 GSGETVQDIERFEPDSFISRL 288
>SRP54_PYRAE (Q8ZT95) Signal recognition 54 kDa protein (SRP54)| Length = 433 Score = 70.9 bits (172), Expect = 3e-12 Identities = 40/123 (32%), Positives = 66/123 (53%) Frame = +1 Query: 196 VGSVKDLILFYVIRXGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQ 375 V + K++ + V GR L++E+ + ++ P+E++LV+D T G Sbjct: 174 VQNFKNMDVIIVDTAGRHRNEEALLKEVRAIYDAVS------PDEVVLVIDATVGKMAAA 227 Query: 376 QAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 555 QA+ F + I I+TK+D TARGG ++ V + G VKF+GVGE V++ + F FV Sbjct: 228 QAEAFMKYLPIHSVIITKMDSTARGGGALAAVAKTGAKVKFIGVGEDVDEFEQFSPRKFV 287 Query: 556 EAI 564 + Sbjct: 288 ARV 290
>SRP54_MYCLE (O33013) Signal recognition particle protein (Fifty-four homolog)| Length = 521 Score = 69.3 bits (168), Expect = 8e-12 Identities = 38/101 (37%), Positives = 56/101 (55%) Frame = +1 Query: 262 GLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGT 441 G+ +EL++ I +A+ P+E+L VLD G + + A F VG TG +LTKLDG Sbjct: 202 GIDDELMAQAGAIREAIN--PDEVLFVLDAMIGQDAVTTAAAFGAGVGFTGVVLTKLDGD 259 Query: 442 ARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 ARGG +SV + G+P+ F GE ++D F + I Sbjct: 260 ARGGAALSVREVTGVPILFATTGEKLDDFDVFHPDRMASRI 300
>SRP54_ACIAM (P70722) Signal recognition 54 kDa protein (SRP54) (Fragment)| Length = 451 Score = 68.6 bits (166), Expect = 1e-11 Identities = 38/102 (37%), Positives = 57/102 (55%) Frame = +1 Query: 259 YGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDG 438 YG L+ K I +A+ P+E+ LV+D + G A +FN I I+TK+DG Sbjct: 194 YGEEAALLEEMKNIYEAIK--PDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDG 251 Query: 439 TARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 TA+GG +S V G +KF+G GE +++L+ F+ FV I Sbjct: 252 TAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARI 293
>SRP54_SULSO (Q97ZE7) Signal recognition 54 kDa protein (SRP54)| Length = 447 Score = 68.2 bits (165), Expect = 2e-11 Identities = 31/81 (38%), Positives = 50/81 (61%) Frame = +1 Query: 322 PNEILLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFV 501 P++++LV+D + G A F+ I I+TK+DGTA+GG +S V G +KF+ Sbjct: 211 PDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVVATGATIKFI 270 Query: 502 GVGEGVEDLQPFDAEAFVEAI 564 G GE +++L+ F+A+ FV I Sbjct: 271 GTGEKIDELETFNAKRFVSRI 291
>SRPR_YEAST (P32916) Signal recognition particle receptor alpha subunit homolog| (SR-alpha) (Docking protein alpha) (DP-alpha) Length = 621 Score = 53.1 bits (126), Expect(2) = 1e-10 Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 5/113 (4%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVG----I 408 GR H + LM L S A P++I++V + G + +QQAK FND G + Sbjct: 513 GRRHNDPTLMSPLKSF------ADQAKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNL 566 Query: 409 TGFILTKLDGTARG-GCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 FI++K D G +V++V GIP+ FVGVG+ DL+ + V + Sbjct: 567 DFFIISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVKWAVNTL 619 Score = 32.3 bits (72), Expect(2) = 1e-10 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 23/86 (26%) Frame = +3 Query: 51 KVLMAAGDTFRAAARDQLEIWAE-------------------RTGSEIV----IDNDKKA 161 KVL+ A DTFR+ A +QL + E +TG++ V Sbjct: 427 KVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYVELFEAGYGGSD 486 Query: 162 QAPSVLSQAVKRGKREGFDIVLCDTS 239 + QA+K + + FDIVL DT+ Sbjct: 487 LVTKIAKQAIKYSRDQNFDIVLMDTA 512
>SRP54_BUCBP (Q89AE4) Signal recognition particle protein (Fifty-four homolog)| Length = 450 Score = 55.8 bits (133), Expect(2) = 1e-10 Identities = 31/99 (31%), Positives = 49/99 (49%) Frame = +1 Query: 241 GRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFI 420 GRL + +M EL+ + P E V D G + + EFN + ++ FI Sbjct: 193 GRLQIDKKMMNELLDVYNI------SHPIETFFVADAMFGQDSINVINEFNKYLPVSSFI 246 Query: 421 LTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPF 537 +TK D R G ++S+ P+KF+G GE +E+L+ F Sbjct: 247 ITKTDSDTRAGIILSIKYLTKKPIKFIGTGEKLEELELF 285 Score = 29.6 bits (65), Expect(2) = 1e-10 Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Frame = +3 Query: 51 KVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPS-VLSQAVKRGKREGFDIVL 227 KV++ + D +R AA QL++ +++ N+ Q+P ++ A++ K + +D++L Sbjct: 131 KVIVTSIDIYRLAAIKQLKMLSKQAKISFFPSNN--TQSPKDIVQHAIQHAKLKFYDVLL 188 Query: 228 CDTS 239 DT+ Sbjct: 189 IDTA 192
>SRP54_AERPE (Q9YB62) Signal recognition 54 kDa protein (SRP54)| Length = 441 Score = 63.9 bits (154), Expect = 3e-10 Identities = 36/102 (35%), Positives = 55/102 (53%) Frame = +1 Query: 259 YGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDG 438 +G L+ K IA + P+E+ LV+D + G + A+ F+ I I+TK+DG Sbjct: 191 HGEEARLLDEMKAIASKV--RPDEVALVIDASIGQKAMGLAERFHKSTPIGSIIVTKMDG 248 Query: 439 TARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 TARGG ++ G +KF+G GE + +L+PF FV I Sbjct: 249 TARGGGALTAAAVTGARIKFIGTGETLGELEPFAPRRFVARI 290
>SRP54_SULAC (O07853) Signal recognition 54 kDa protein (SRP54)| Length = 444 Score = 63.5 bits (153), Expect = 4e-10 Identities = 29/81 (35%), Positives = 48/81 (59%) Frame = +1 Query: 322 PNEILLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFV 501 P+E++LV+D + G A F+ I I++K+DGTA+GG +S V G +KF+ Sbjct: 210 PDEVILVIDASIGQKAYDLASRFHQASPIGSLIVSKMDGTAKGGGALSAVIATGAQIKFI 269 Query: 502 GVGEGVEDLQPFDAEAFVEAI 564 G GE +++L+ F+ FV + Sbjct: 270 GTGEKLDELEVFNPRRFVSRL 290
>SRPR_MOUSE (Q9DBG7) Signal recognition particle receptor alpha subunit| (SR-alpha) (Docking protein alpha) (DP-alpha) Length = 636 Score = 37.7 bits (86), Expect = 0.024 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 12/77 (15%) Frame = +3 Query: 45 GAKVLMAAGDTFRAAARDQLEIWA---------ERTGSEIVIDNDKKA---QAPSVLSQA 188 G VL+AA DTFRA A +QL E+ G ++ +K A + +A Sbjct: 444 GFSVLIAACDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEA 503 Query: 189 VKRGKREGFDIVLCDTS 239 + + +GFD+VL DT+ Sbjct: 504 IAFARNQGFDVVLVDTA 520
>SRPR_HUMAN (P08240) Signal recognition particle receptor alpha subunit| (SR-alpha) (Docking protein alpha) (DP-alpha) Length = 638 Score = 37.7 bits (86), Expect = 0.024 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 12/77 (15%) Frame = +3 Query: 45 GAKVLMAAGDTFRAAARDQLEIWA---------ERTGSEIVIDNDKKA---QAPSVLSQA 188 G VL+AA DTFRA A +QL E+ G ++ +K A + +A Sbjct: 446 GFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEA 505 Query: 189 VKRGKREGFDIVLCDTS 239 + + +GFD+VL DT+ Sbjct: 506 IAFARNQGFDVVLVDTA 522
>FLHF_HELPY (O25679) Flagellar biosynthesis protein flhF (Flagella-associated| GTP-binding protein) Length = 459 Score = 34.7 bits (78), Expect = 0.21 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Frame = +1 Query: 328 EILLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGV 507 ++ LVL TT ++ + V+GI I TKLD + G + S+V E P+ ++ V Sbjct: 368 DVSLVLSVTTKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSV 427 Query: 508 GEGVE-DLQPFDAEAFVEAI 564 G+ V DL+ E V+ + Sbjct: 428 GQEVPMDLKVATNEYLVDCM 447
>FLHF_HELPJ (Q9ZM34) Flagellar biosynthesis protein flhF (Flagella-associated| GTP-binding protein) Length = 455 Score = 34.7 bits (78), Expect = 0.21 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Frame = +1 Query: 328 EILLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGV 507 ++ LVL TT ++ + V+GI I TKLD + G + S+V E P+ ++ V Sbjct: 364 DVSLVLSVTTKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSV 423 Query: 508 GEGVE-DLQPFDAEAFVEAI 564 G+ V DL+ E V+ + Sbjct: 424 GQEVPMDLKVATNEYLVDCM 443
>FLHF_CAMJE (O52908) Flagellar biosynthesis protein flhF (Flagella-associated| GTP-binding protein) Length = 484 Score = 34.7 bits (78), Expect = 0.21 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Frame = +1 Query: 334 LLVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGE 513 L+V T ++++ K F+ + I I+TK D T G + S+V E IP+ F +G+ Sbjct: 397 LVVSANTKHEDLMEIYKNFS-FLNIDTLIITKFDETKVFGNIFSLVYETNIPLSFFSIGQ 455 Query: 514 GV-EDLQPFDAEAFVEAI 564 V +DL+ +++ V I Sbjct: 456 EVPDDLEVANSDFLVHCI 473
>FLHF_PSEPU (O52256) Flagellar biosynthesis protein flhF (Flagella-associated| GTP-binding protein) Length = 437 Score = 33.5 bits (75), Expect = 0.46 Identities = 23/63 (36%), Positives = 32/63 (50%) Frame = +1 Query: 337 LVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEG 516 LVL T+ +L A G+ G ILTKLD TA G V+S+ +PV ++ G Sbjct: 332 LVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPVAYLTDGPR 391 Query: 517 VED 525 + D Sbjct: 392 IPD 394
>SRPR_CANFA (P06625) Signal recognition particle receptor alpha subunit| (SR-alpha) (Docking protein alpha) (DP-alpha) Length = 638 Score = 33.1 bits (74), Expect = 0.60 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%) Frame = +3 Query: 45 GAKVLMAAGDTFRAAARDQLEIWAER----------TGSEIV--IDNDKKAQAPSVLSQA 188 G VL+AA DTFRA A + + R G +V + A + +A Sbjct: 446 GFSVLIAACDTFRAGAVEHVRTHTRRLSALHPPEKHAGPTMVQLFEKGYGKDAAGIAMEA 505 Query: 189 VKRGKREGFDIVLCDTS 239 + + +GFD+VL DT+ Sbjct: 506 IAFARNQGFDVVLVDTA 522
>JHD3C_HUMAN (Q9H3R0) JmjC domain-containing histone demethylation protein 3C| (EC 1.14.11.-) (Jumonji domain-containing protein 2C) (Gene amplified in squamous cell carcinoma 1 protein) (GASC-1 protein) Length = 1056 Score = 32.0 bits (71), Expect = 1.3 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = +3 Query: 393 RCCWNHRIHSD----EARRHCSWWLCGERRRRTWNSSQVCWCRRRGG 521 +CC R+H+ + C WLC +R W +++ C C RGG Sbjct: 720 KCCV--RVHASCYGIPSHEICDGWLCARCKRNAW-TAECCLCNLRGG 763
>LPXK_XANOR (Q5H0H1) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 346 Score = 32.0 bits (71), Expect = 1.3 Identities = 22/78 (28%), Positives = 37/78 (47%) Frame = +3 Query: 36 KNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREGF 215 ++E K DT A D+ + A +TG+ + +D+D+ A A +++ G Sbjct: 95 RDEAGKARWVEADTPVALGGDEPVLIAWKTGARVRVDSDRLAAARALV--------EAGC 146 Query: 216 DIVLCDTSXTTSYKLRSD 269 DIV+CD Y+L D Sbjct: 147 DIVICD-DGLQHYRLARD 163
>LPXK_XANOM (Q2P3E8) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 346 Score = 32.0 bits (71), Expect = 1.3 Identities = 22/78 (28%), Positives = 37/78 (47%) Frame = +3 Query: 36 KNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPSVLSQAVKRGKREGF 215 ++E K DT A D+ + A +TG+ + +D+D+ A A +++ G Sbjct: 95 RDEAGKARWVEADTPVALGGDEPVLIAWKTGARVRVDSDRLAAARALV--------EAGC 146 Query: 216 DIVLCDTSXTTSYKLRSD 269 DIV+CD Y+L D Sbjct: 147 DIVICD-DGLQHYRLARD 163
>FLHF_BACSU (Q01960) Flagellar biosynthesis protein flhF (Flagella-associated| GTP-binding protein) Length = 366 Score = 32.0 bits (71), Expect = 1.3 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Frame = +1 Query: 337 LVLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEG 516 LVL T ++ + V + +I TK+D T G V +++ E I V F+ G+ Sbjct: 288 LVLSATAKYEDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQN 347 Query: 517 V-EDLQPFDAEAFVEAI 564 V ED+Q FV + Sbjct: 348 VPEDIQTVSPLGFVRML 364
>JHD3C_MOUSE (Q8VCD7) JmjC domain-containing histone demethylation protein 3C| (EC 1.14.11.-) (Jumonji domain-containing protein 2C) Length = 1054 Score = 30.8 bits (68), Expect = 3.0 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 Query: 441 CSWWLCGERRRRTWNSSQVCWCRRRGG 521 C WLC +R W +++ C C RGG Sbjct: 736 CDGWLCARCKRNAW-TAECCLCNLRGG 761
>URAA_PASMU (Q9CPL9) Probable uracil permease (Uracil transporter)| Length = 417 Score = 30.8 bits (68), Expect = 3.0 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = +1 Query: 397 VVGITGFILTKLDGT-ARGGCVVSVVDELGIPVKFVGVGE 513 VVG++ I K+D T AR C++SVV GI FV GE Sbjct: 346 VVGMSTLIRGKVDVTEARNLCIISVVMTFGIGGMFVNFGE 385
>URAA_HAEIN (P45117) Probable uracil permease (Uracil transporter)| Length = 414 Score = 30.4 bits (67), Expect = 3.9 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +1 Query: 397 VVGITGFILTKLDGT-ARGGCVVSVVDELGIPVKFVGVG 510 VVG++ I K+D T AR C++SVV GI FV VG Sbjct: 347 VVGMSTLIRGKVDVTEARNLCIISVVMTFGIGNMFVDVG 385
>GAL1_CLOPE (Q8XKP9) Galactokinase (EC 2.7.1.6) (Galactose kinase)| Length = 387 Score = 29.3 bits (64), Expect = 8.6 Identities = 12/51 (23%), Positives = 26/51 (50%) Frame = +1 Query: 412 GFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAI 564 G + ++ G GGC +++V+ + VG+ +D ++A +V +I Sbjct: 330 GVLGARMTGAGFGGCAIAIVNNAHVDEFIKNVGQAYKDAIGYEASFYVASI 380
>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding| protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) Length = 2426 Score = 29.3 bits (64), Expect = 8.6 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = -1 Query: 280 PTLPSDRNLYEVVXDVSHRTISNPSRFPRFTACERTDGACAFLSLSMTISEP 125 P+LPS+ ++ + VS IS PS P + +D + ++T+ EP Sbjct: 1200 PSLPSEESVSQPEPPVSQSEISEPSAVPTDYSVSASDPSVLVSEAAVTVPEP 1251
>PHEA_PSEUE (P31020) Phenol 2-monooxygenase (EC 1.14.13.7) (Phenol hydroxylase)| Length = 607 Score = 29.3 bits (64), Expect = 8.6 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Frame = +1 Query: 391 NDVVGITGF-ILTKLDGTARGGCVVSVVDELGIPVKFVGVGEG--VEDL 528 +D+ T F I T + G A V V + LGI +K V +GEG V+DL Sbjct: 503 HDIAEGTRFTIFTGITGQAWADAAVRVAERLGIDLKAVVIGEGQPVQDL 551
>METN_HAEIN (P44785) Probable D-methionine transport ATP-binding protein metN| Length = 345 Score = 29.3 bits (64), Expect = 8.6 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 5/95 (5%) Frame = +1 Query: 298 IAKALPGAPNEILL-----VLDGTTGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVV 462 IA+AL P +L LD T ++L+ KE N +GIT ++T + C Sbjct: 151 IARALASDPKVLLCDEATSALDPATTQSILKLLKEINRTLGITILLITHEMEVVKQICDQ 210 Query: 463 SVVDELGIPVKFVGVGEGVEDLQPFDAEAFVEAIF 567 V + G V+ VGE + + A+ F+ + F Sbjct: 211 VAVIDQGRLVEQGTVGEIFANPKTELAQEFIRSTF 245 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,295,637 Number of Sequences: 219361 Number of extensions: 1616520 Number of successful extensions: 5126 Number of sequences better than 10.0: 108 Number of HSP's better than 10.0 without gapping: 4899 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5076 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
