ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags32p07 |
|---|---|
| Clone Library Name | barley_pub |
>Y4844_ARATH (O49453) Protein At4g28440| Length = 153 Score = 76.3 bits (186), Expect = 4e-14 Identities = 39/55 (70%), Positives = 42/55 (76%) Frame = +1 Query: 31 GNTVIFRNARIDMFKDTMRLAVDKWGRIEVVEEPAGFKVNEDNNVSKVEYELVNV 195 G TVI RN+RIDMFK TMRL VDKWGRIE A F V EDNN+S VEYEL+NV Sbjct: 96 GATVILRNSRIDMFKGTMRLGVDKWGRIEAT-GAASFTVKEDNNLSLVEYELINV 149
>YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in chromosome I| Length = 536 Score = 36.2 bits (82), Expect = 0.046 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Frame = -2 Query: 194 TFTSSYSTFDTLLSSFTLK--PAGSSTTSIRPHLSTASLIVSLNMSILALRKITVLPASA 21 +FT++ S+ DT LSS PA SS+ + LS++S+I S + S+L+ T + +S+ Sbjct: 2 SFTNNTSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSS 61 Query: 20 SQS 12 S S Sbjct: 62 SSS 64
>DHB2_MOUSE (P51658) Estradiol 17-beta-dehydrogenase 2 (EC 1.1.1.62)| (17-beta-HSD 2) (17-beta-hydroxysteroid dehydrogenase 2) Length = 381 Score = 31.2 bits (69), Expect = 1.5 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +1 Query: 55 ARIDMFKDTMRLAVDKWGRIEVVEEPAGFKVN 150 A + MF +R +DKWG V +P GFK N Sbjct: 238 AALTMFSTIIRQELDKWGVKVVTIKPGGFKTN 269
>COAT_CNV (P15183) Coat protein| Length = 380 Score = 30.8 bits (68), Expect = 1.9 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 6/59 (10%) Frame = -2 Query: 197 GTFTSSYSTFDTLLSSFTLKPAGSS------TTSIRPHLSTASLIVSLNMSILALRKIT 39 G T S S T+ SSF++ AGSS T + +LS + L + N + A+R IT Sbjct: 315 GGLTPSISGGGTINSSFSVSTAGSSAYVANITIRVNANLSLSGLTGATNAQLFAVRAIT 373
>GATB_MOUSE (Q99JT1) Probable glutamyl-tRNA(Gln) amidotransferase subunit B,| mitochondrial precursor (EC 6.3.5.-) (Glu-ADT subunit B) (Cytochrome oxidase assembly factor PET112 homolog) Length = 557 Score = 30.8 bits (68), Expect = 1.9 Identities = 22/90 (24%), Positives = 40/90 (44%) Frame = -2 Query: 299 KRTYYCYPLPPKIYVHSQREPVLSTAHLRSCFFGGTFTSSYSTFDTLLSSFTLKPAGSST 120 ++ Y+ LP + QR P+ + HL C + G S +T + L+ S Sbjct: 138 RKHYFYSDLPAGYQITQQRLPIAANGHLTYCIYLGKKPSQVTTKTVRIKQIQLEQ--DSG 195 Query: 119 TSIRPHLSTASLIVSLNMSILALRKITVLP 30 S+ L + +LI LN + + L ++ + P Sbjct: 196 KSLHDDLRSQTLI-DLNRAGIGLLEVVLEP 224
>YAB4_ARATH (Q9LDT3) Axial regulator YABBY4 (Protein INNER NO OUTER)| Length = 231 Score = 30.0 bits (66), Expect = 3.3 Identities = 13/23 (56%), Positives = 20/23 (86%) Frame = +1 Query: 148 NEDNNVSKVEYELVNVPPKKQER 216 NED +VS+V Y++VN PP+K++R Sbjct: 116 NEDEDVSRV-YQVVNKPPEKRQR 137
>DHB2_HUMAN (P37059) Estradiol 17-beta-dehydrogenase 2 (EC 1.1.1.62)| (17-beta-HSD 2) (Microsomal 17-beta-hydroxysteroid dehydrogenase) (20 alpha-hydroxysteroid dehydrogenase) (20-alpha-HSD) (E2DH) Length = 387 Score = 30.0 bits (66), Expect = 3.3 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Frame = +1 Query: 55 ARIDMFKDTMRLAVDKWGRIEVVEEPAGFKVN---EDNNVSKVEYELV-NVPPKKQE 213 A + MF MRL + KWG +P GF N + K+E +++ ++P + QE Sbjct: 237 AAVTMFSSVMRLELSKWGIKVASIQPGGFLTNIAGTSDKWEKLEKDILDHLPAEVQE 293
>PST1_SCHPO (Q09750) Paired amphipathic helix protein pst1 (SIN3 homolog 1)| Length = 1522 Score = 29.6 bits (65), Expect = 4.3 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Frame = -1 Query: 441 PTKFNRLASYTTPPPTQNTIHP*TQRDQAFLPAEAFFTTTNSAFQDNEANLLLLPTASQN 262 P N L T PPP + P LPA A +T+ N Q + ++ +L P A Sbjct: 272 PLMINDLGKTTAPPPPHGSTTP--------LPAAASYTSMNMK-QSSASHPVLQPPAPST 322 Query: 261 L--CPQPERAGP 232 L P P A P Sbjct: 323 LQFNPSPSPAAP 334
>SIA7A_MOUSE (Q9QZ39) Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase| 1 (EC 2.4.99.3) (GalNAc alpha-2,6-sialyltransferase I) (ST6GalNAc I) (Sialyltransferase 7A) Length = 526 Score = 29.6 bits (65), Expect = 4.3 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +1 Query: 61 IDMFKDTMRLAVDKWGRIEVVEEPAGFKVNEDNNVSKVEYELVNVPPKKQER 216 I +F D+ R +W R+E P GF + N S V+ + PP +Q++ Sbjct: 229 ITLFLDSGRFTQSEWNRLEHFAPPFGFM---ELNQSLVQKVVTRFPPVRQQQ 277
>GUAA_MYCPE (Q8EWS9) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 511 Score = 28.9 bits (63), Expect = 7.3 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +1 Query: 76 DTMRLAVDKWGRI--EVVEEPAGFKVNEDNNVSKVEYELVNVPP 201 D+M KW +I E +E+ + N+ N+S+V Y++ N PP Sbjct: 462 DSMDAMSAKWYKIPLEHLEKISSIICNKVKNISRVVYDITNKPP 505
>EPHAA_HUMAN (Q5JZY3) Ephrin type-A receptor 10 precursor (EC 2.7.10.1)| Length = 1008 Score = 28.9 bits (63), Expect = 7.3 Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 2/95 (2%) Frame = -2 Query: 299 KRTYYCYPLPPKIYVHSQREPVLSTA--HLRSCFFGGTFTSSYSTFDTLLSSFTLKPAGS 126 +R +C PP Y S R P+ S H R+ TF D+ S T P+ S Sbjct: 277 ERGDFCEACPPGFYKVSPRRPLCSPCPEHSRALENASTFCVCQ---DSYARSPTDPPSAS 333 Query: 125 STTSIRPHLSTASLIVSLNMSILALRKITVLPASA 21 T RP + L SL+ S L LR + PA + Sbjct: 334 CT---RPPSAPRDLQYSLSRSPLVLRLRWLPPADS 365
>PGDH_MACFA (Q8MJY8) 15-hydroxyprostaglandin dehydrogenase [NAD+] (EC| 1.1.1.141) (PGDH) (Prostaglandin dehydrogenase 1) Length = 266 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = +1 Query: 73 KDTMRLAVDKWGRIEVVEEPAGFKVNEDNNVSKVEYELVNV 195 +DT R VD +GR++++ AG NE N ++ LV+V Sbjct: 72 RDTFRKVVDHFGRLDILVNNAGVN-NEKNWEKTLQINLVSV 111
>PGDH_HUMAN (P15428) 15-hydroxyprostaglandin dehydrogenase [NAD+] (EC| 1.1.1.141) (PGDH) (Prostaglandin dehydrogenase 1) Length = 266 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = +1 Query: 73 KDTMRLAVDKWGRIEVVEEPAGFKVNEDNNVSKVEYELVNV 195 +DT R VD +GR++++ AG NE N ++ LV+V Sbjct: 72 RDTFRKVVDHFGRLDILVNNAGVN-NEKNWEKTLQINLVSV 111
>BEM3_YEAST (P32873) GTPase-activating protein BEM3 (Bud emergence protein 3)| Length = 1128 Score = 28.5 bits (62), Expect = 9.6 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = -2 Query: 197 GTFTSSYSTFDTLLSSFTLKPAGSSTTSIRPHLSTASLIVSLNMSI 60 G S +ST L++F+ P GS T RPH S+ S + S+ S+ Sbjct: 456 GETASIHST--NTLNTFSSTPQGSLKTLRRPHASSVSTVKSVAQSL 499
>DHB2_RAT (Q62730) Estradiol 17-beta-dehydrogenase 2 (EC 1.1.1.62)| (17-beta-HSD 2) (17-beta-hydroxysteroid dehydrogenase 2) Length = 381 Score = 28.5 bits (62), Expect = 9.6 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Frame = +1 Query: 55 ARIDMFKDTMRLAVDKWGRIEVVEEPAGFKVN---EDNNVSKVEYELVN 192 A I MF +R + KWG V P GF+ N ++ K+E E+++ Sbjct: 238 AAISMFSAVIRQELAKWGVKVVTIHPGGFQTNIVGSQDSWDKMEKEILD 286
>YFGA_ECOLI (P27434) Putative HTH-type transcriptional regulator yfgA| Length = 337 Score = 28.5 bits (62), Expect = 9.6 Identities = 17/64 (26%), Positives = 28/64 (43%) Frame = -1 Query: 420 ASYTTPPPTQNTIHP*TQRDQAFLPAEAFFTTTNSAFQDNEANLLLLPTASQNLCPQPER 241 A+ +TPP + +T TQ PA A N+ ++AN+ T + P+ Sbjct: 175 ATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANVDTAATPAPTAATTPDG 234 Query: 240 AGPV 229 A P+ Sbjct: 235 AAPL 238
>FPRP_RAT (Q62786) Prostaglandin F2 receptor negative regulator precursor| (Prostaglandin F2-alpha receptor regulatory protein) (Prostaglandin F2-alpha receptor-associated protein) (CD315 antigen) Length = 879 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -1 Query: 138 AGRLLHHLDPAPLVHRQPHRVLEHVD 61 A +L LD LVH PH L HVD Sbjct: 327 ASHMLARLDRDSLVHSSPHVALSHVD 352
>FPRP_MOUSE (Q9WV91) Prostaglandin F2 receptor negative regulator precursor| (Prostaglandin F2-alpha receptor regulatory protein) (Prostaglandin F2-alpha receptor-associated protein) (CD315 antigen) Length = 879 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -1 Query: 138 AGRLLHHLDPAPLVHRQPHRVLEHVD 61 A +L LD LVH PH L HVD Sbjct: 327 ASHMLARLDRDSLVHSSPHVALSHVD 352
>FPRP_HUMAN (Q9P2B2) Prostaglandin F2 receptor negative regulator precursor| (Prostaglandin F2-alpha receptor regulatory protein) (Prostaglandin F2-alpha receptor-associated protein) (CD9 partner 1) (CD9P-1) (CD315 antigen) Length = 879 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -1 Query: 132 RLLHHLDPAPLVHRQPHRVLEHVD 61 R+L LD LVH PH L HVD Sbjct: 329 RVLARLDRDSLVHSSPHVALSHVD 352 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,101,254 Number of Sequences: 219361 Number of extensions: 1303536 Number of successful extensions: 4226 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4224 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
