ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags32p07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Minus Query: 31 ggcaacacggtgatcttccgcaacgccaggatcgacatgttcaaggacacgatgaggctg 90 |||| |||||| ||||||||||| |||| ||| ||||||||||||| || ||||||||| Sbjct: 219036 ggcaccacggtcatcttccgcaatgccaagattgacatgttcaaggggaccatgaggctg 218977 Query: 91 gcggtggacaagtggggccggatcgaggtg 120 || || ||||| |||||||||||||||||| Sbjct: 218976 gcagttgacaaatggggccggatcgaggtg 218947 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 242 ctctctggctgtggacatagatttt 266 ||||| ||||||||||||||||||| Sbjct: 218840 ctctcgggctgtggacatagatttt 218816
>dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0075G19 Length = 163558 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Minus Query: 31 ggcaacacggtgatcttccgcaacgccaggatcgacatgttcaaggacacgatgaggctg 90 |||| |||||| ||||||||||| |||| ||| ||||||||||||| || ||||||||| Sbjct: 83932 ggcaccacggtcatcttccgcaatgccaagattgacatgttcaaggggaccatgaggctg 83873 Query: 91 gcggtggacaagtggggccggatcgaggtg 120 || || ||||| |||||||||||||||||| Sbjct: 83872 gcagttgacaaatggggccggatcgaggtg 83843 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 242 ctctctggctgtggacatagatttt 266 ||||| ||||||||||||||||||| Sbjct: 83736 ctctcgggctgtggacatagatttt 83712
>dbj|AK071627.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107F06, full insert sequence Length = 1006 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 31 ggcaacacggtgatcttccgcaacgccaggatcgacatgttcaaggacacgatgaggctg 90 |||| |||||| ||||||||||| |||| ||| ||||||||||||| || ||||||||| Sbjct: 430 ggcaccacggtcatcttccgcaatgccaagattgacatgttcaaggggaccatgaggctg 489 Query: 91 gcggtggacaagtggggccggatcgaggtg 120 || || ||||| |||||||||||||||||| Sbjct: 490 gcagttgacaaatggggccggatcgaggtg 519 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 ctctctggctgtggacatagatttt 266 ||||| ||||||||||||||||||| Sbjct: 626 ctctcgggctgtggacatagatttt 650
>dbj|AK067021.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090L10, full insert sequence Length = 902 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 31 ggcaacacggtgatcttccgcaacgccaggatcgacatgttcaaggacacgatgaggctg 90 |||| |||||| ||||||||||| |||| ||| ||||||||||||| || ||||||||| Sbjct: 395 ggcaccacggtcatcttccgcaatgccaagattgacatgttcaaggggaccatgaggctg 454 Query: 91 gcggtggacaagtggggccggatcgaggtg 120 || || ||||| |||||||||||||||||| Sbjct: 455 gcagttgacaaatggggccggatcgaggtg 484 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 ctctctggctgtggacatagatttt 266 ||||| ||||||||||||||||||| Sbjct: 591 ctctcgggctgtggacatagatttt 615
>dbj|AP005621.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0681G01, complete sequence Length = 184118 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 31 ggcaacacggtgatcttccgcaacgccaggatcgacatgttcaaggacacgatgaggctg 90 |||| |||||| ||||||||||| |||| ||| ||||||||||||| || ||||||||| Sbjct: 1506 ggcaccacggtcatcttccgcaatgccaagattgacatgttcaaggggaccatgaggctg 1565 Query: 91 gcggtggacaagtggggccggatcgaggtg 120 || || ||||| |||||||||||||||||| Sbjct: 1566 gcagttgacaaatggggccggatcgaggtg 1595 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 ctctctggctgtggacatagatttt 266 ||||| ||||||||||||||||||| Sbjct: 1702 ctctcgggctgtggacatagatttt 1726
>gb|AY104871.1| Zea mays PCO094431 mRNA sequence Length = 902 Score = 89.7 bits (45), Expect = 8e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 40 gtgatcttccgcaacgccaggatcgacatgttcaaggacacgatgaggctggcggtggac 99 |||||||||||||| |||| ||| || |||||||||| ||| ||||| |||||||||||| Sbjct: 449 gtgatcttccgcaatgccaagattgatatgttcaagggcaccatgagactggcggtggac 508 Query: 100 aagtggggccggatcgaggtg 120 || ||||||||||| |||||| Sbjct: 509 aattggggccggattgaggtg 529
>ref|NM_188693.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 426 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 40 gtgatcttccgcaacgccaggatcgacatgttcaaggacacgatgaggctggcggtggac 99 |||||| | ||||| |||| |||||||||||||| | | | |||||||| ||||||||| Sbjct: 265 gtgatcatgcgcaatgccaaaatcgacatgttcaaaggctcaatgaggcttgcggtggac 324 Query: 100 aagtgggg 107 |||||||| Sbjct: 325 aagtgggg 332
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 40 gtgatcttccgcaacgccaggatcgacatgttcaaggacacgatgaggctggcggtggac 99 |||||| | ||||| |||| |||||||||||||| | | | |||||||| ||||||||| Sbjct: 7671285 gtgatcatgcgcaatgccaaaatcgacatgttcaaaggctcaatgaggcttgcggtggac 7671344 Query: 100 aagtgggg 107 |||||||| Sbjct: 7671345 aagtgggg 7671352
>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0086P08 Length = 145312 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 40 gtgatcttccgcaacgccaggatcgacatgttcaaggacacgatgaggctggcggtggac 99 |||||| | ||||| |||| |||||||||||||| | | | |||||||| ||||||||| Sbjct: 81861 gtgatcatgcgcaatgccaaaatcgacatgttcaaaggctcaatgaggcttgcggtggac 81920 Query: 100 aagtgggg 107 |||||||| Sbjct: 81921 aagtgggg 81928
>dbj|AK073776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067D04, full insert sequence Length = 854 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 40 gtgatcttccgcaacgccaggatcgacatgttcaaggacacgatgaggctggcggtggac 99 |||||| | ||||| |||| |||||||||||||| | | | |||||||| ||||||||| Sbjct: 404 gtgatcatgcgcaatgccaaaatcgacatgttcaaaggctcaatgaggcttgcggtggac 463 Query: 100 aagtgggg 107 |||||||| Sbjct: 464 aagtgggg 471
>gb|AY104721.1| Zea mays PCO105901 mRNA sequence Length = 1144 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 36 cacggtgatcttccgcaacgccaggatcgacatgttcaaggacacgatgaggctggcggt 95 |||||||||||| ||||| |||| |||||||||||||| | | |||||||| || || Sbjct: 237 cacggtgatcttgcgcaatgccaaaatcgacatgttcaaaggatcaatgaggcttgcagt 296 Query: 96 ggacaagtggggccggatcgagg 118 |||||| ||||| ||||| |||| Sbjct: 297 ggacaaatgggggcggattgagg 319
>gb|BT016179.1| Zea mays clone Contig12 mRNA sequence Length = 965 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Plus Query: 60 gatcgacatgttcaaggacacgatgaggctggcggtggacaagtgggg 107 ||||||||||||||||| ||||| |||| || |||||||||||||| Sbjct: 469 gatcgacatgttcaagggttcgatgcggcttgcagtggacaagtgggg 516
>gb|AY105519.1| Zea mays PCO124021 mRNA sequence Length = 802 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Plus Query: 60 gatcgacatgttcaaggacacgatgaggctggcggtggacaagtgggg 107 ||||||||||||||||| ||||| |||| || |||||||||||||| Sbjct: 435 gatcgacatgttcaagggttcgatgcggcttgcagtggacaagtgggg 482
>gb|AY108146.1| Zea mays PCO079748 mRNA sequence Length = 836 Score = 46.1 bits (23), Expect = 0.11 Identities = 65/79 (82%) Strand = Plus / Plus Query: 40 gtgatcttccgcaacgccaggatcgacatgttcaaggacacgatgaggctggcggtggac 99 |||||||| ||||| |||| || ||||||||||| | | |||||||| || |||||| Sbjct: 324 gtgatcttgcgcaatgccaaaatagacatgttcaaaggatcaatgaggcttgcagtggac 383 Query: 100 aagtggggccggatcgagg 118 |||||||| ||||| |||| Sbjct: 384 aagtgggggcggattgagg 402
>emb|AL513365.27| Human DNA sequence from clone RP3-476K8 on chromosome 1 Contains the LIN28 gene for lin-28 homolog (C. elegans), the DHDDS gene for dehydrodolichyl diphosphate synthase, a ribosomal protein L17 (RPL17) pseudogene, a novel gene, the HMGN2 gene for high-mobility group nucleosomal binding domain 2 and two CpG islands, complete sequence Length = 107415 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 349 aaggaaggcctggtctctttgggttt 374 ||||||||||||| |||||||||||| Sbjct: 102124 aaggaaggcctgggctctttgggttt 102149
>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete sequence Length = 1085720 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 ctcgtgaacgtgccgccgaagaagc 208 ||||||||||||| ||||||||||| Sbjct: 60884 ctcgtgaacgtgctgccgaagaagc 60860
>ref|XM_607501.2| PREDICTED: Bos taurus similar to microtubule associated serine/threonine kinase 1 (LOC529061), partial mRNA Length = 6123 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 cctgccggcttcaaggtgaac 150 ||||||||||||||||||||| Sbjct: 1939 cctgccggcttcaaggtgaac 1959
>ref|XM_567282.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNJ00250) partial mRNA Length = 3181 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 ctcgtgaacgtgccgccgaagaagc 208 ||||||||||||| ||||||||||| Sbjct: 2414 ctcgtgaacgtgctgccgaagaagc 2438
>dbj|AB121977.1| Xanthobacter polyaromaticivorans dbd gene cluster (dbdA, dbdB, dbdCa, dbdCb, dbdCc, dbdD, dbdE), complete and partial cds Length = 6407 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 cggcaacacggtgatcttccg 50 ||||||||||||||||||||| Sbjct: 5730 cggcaacacggtgatcttccg 5750
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 67 atgttcaaggacacgatgaggctggcggtggacaagtgggg 107 |||||||||| ||||| |||| ||||||||||||||||| Sbjct: 40182 atgttcaaggggtcgatgcggcttgcggtggacaagtgggg 40142
>dbj|AK121085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064B05, full insert sequence Length = 756 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 67 atgttcaaggacacgatgaggctggcggtggacaagtgggg 107 |||||||||| ||||| |||| ||||||||||||||||| Sbjct: 392 atgttcaaggggtcgatgcggcttgcggtggacaagtgggg 432
>ref|XM_560403.1| Anopheles gambiae str. PEST ENSANGP00000019621 (ENSANGG00000017132), partial mRNA Length = 1287 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 acaacgtgtcgaaggtcgagtacga 182 |||||||||||||||| |||||||| Sbjct: 356 acaacgtgtcgaaggtggagtacga 380
>gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0036D10, complete sequence Length = 156772 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 67 atgttcaaggacacgatgaggctggcggtggacaagtgggg 107 |||||||||| ||||| |||| ||||||||||||||||| Sbjct: 40182 atgttcaaggggtcgatgcggcttgcggtggacaagtgggg 40142
>gb|AC152969.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0098I11, complete sequence Length = 122970 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 67 atgttcaaggacacgatgaggctggcggtggacaagtgggg 107 |||||||||| ||||| |||| ||||||||||||||||| Sbjct: 49411 atgttcaaggggtcgatgcggcttgcggtggacaagtgggg 49371
>gb|AC154046.1| Drosophila melanogaster clone BACR29O22, complete sequence Length = 177480 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ctctctctggctgtggacat 259 |||||||||||||||||||| Sbjct: 146384 ctctctctggctgtggacat 146403
>gb|AC164956.2| Mus musculus BAC clone RP24-250C7 from chromosome 12, complete sequence Length = 192647 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 agcaggaaggaaggcctggt 362 |||||||||||||||||||| Sbjct: 179697 agcaggaaggaaggcctggt 179678
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ccggcaacacggtgatcttc 48 |||||||||||||||||||| Sbjct: 2313742 ccggcaacacggtgatcttc 2313723
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 ccggcaacacggtgatcttc 48 |||||||||||||||||||| Sbjct: 1190116 ccggcaacacggtgatcttc 1190135
>ref|XM_799230.1| Trypanosoma cruzi strain CL Brener MFS transporter (Tc00.1047053503505.20) partial mRNA Length = 1112 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 192 cgtgccgccgaagaagcaggagcgtaaa 219 |||| ||||| ||||||||||||||||| Sbjct: 44 cgtgacgccggagaagcaggagcgtaaa 71
>ref|XM_760211.1| Theileria parva strain Muguga ABC transporter (TP02_0737) partial mRNA Length = 1905 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 atggatcgtgttctgtgtcg 398 |||||||||||||||||||| Sbjct: 1138 atggatcgtgttctgtgtcg 1119
>emb|CR704453.2|CNS0G6I9 Tetraodon nigroviridis full-length cDNA Length = 592 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cacgatgaggctggcggtgg 97 |||||||||||||||||||| Sbjct: 5 cacgatgaggctggcggtgg 24
>emb|BX842568.3| Human DNA sequence from clone RP11-31H15 on chromosome X Contains the gene for a novel protein, a transmembrane 4 superfamily member 10 (TM4SF10) pseudogene, a transcription factor Dp-1 (TFDP1) pseudogene, a novel pseudogene and two ferritin, heavy polypeptide-like 17 (FTHL17) pseudogenes, complete sequence Length = 161540 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 ctgttagtagtagtgaaaaaggct 340 ||||||||||||| |||||||||| Sbjct: 99094 ctgttagtagtagcgaaaaaggct 99071
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 gaagccggcaacacggtgatcttc 48 ||||||||||| |||||||||||| Sbjct: 170739 gaagccggcaagacggtgatcttc 170762
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 ccggcaacacggtgatcttc 48 |||||||||||||||||||| Sbjct: 1071600 ccggcaacacggtgatcttc 1071619
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 ccggcttcaaggtgaacgaggaca 157 |||||||||||||| ||||||||| Sbjct: 39615 ccggcttcaaggtgcacgaggaca 39638
>emb|BX663528.10| Zebrafish DNA sequence from clone DKEYP-47F9 in linkage group 17, complete sequence Length = 193986 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 gaggtggtggaggagcctgc 134 |||||||||||||||||||| Sbjct: 134032 gaggtggtggaggagcctgc 134051
>emb|AL591410.8| Mouse DNA sequence from clone RP23-96I2 on chromosome 11 Contains part of the Myo1d gene for myosin ID, complete sequence Length = 231675 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tgggaggcagtgggtagcag 285 |||||||||||||||||||| Sbjct: 181126 tgggaggcagtgggtagcag 181107
>gb|AC069405.6| Drosophila melanogaster 3L BAC RP98-17J20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167638 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ctctctctggctgtggacat 259 |||||||||||||||||||| Sbjct: 85372 ctctctctggctgtggacat 85353
>tpg|BK002132.1| TPA: TPA_inf: Drosophila melanogaster HDC10043 (HDC10043) gene, complete cds Length = 2327 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ctctctctggctgtggacat 259 |||||||||||||||||||| Sbjct: 523 ctctctctggctgtggacat 504
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 gaacgtgccgccgaagaagc 208 |||||||||||||||||||| Sbjct: 500989 gaacgtgccgccgaagaagc 500970
>gb|AC079644.9|AC079644 Mus musculus 12 BAC RP23-174O6 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 204394 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 agcaggaaggaaggcctggt 362 |||||||||||||||||||| Sbjct: 136707 agcaggaaggaaggcctggt 136688 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 agcaggaaggaaggcctggt 362 |||||||||||||||||||| Sbjct: 80017 agcaggaaggaaggcctggt 79998
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cgaaggtcgagtacgaactc 186 |||||||||||||||||||| Sbjct: 2451625 cgaaggtcgagtacgaactc 2451606 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 tcgaggtggtggaggagcctgccg 136 |||||| ||||||||||||||||| Sbjct: 702181 tcgaggaggtggaggagcctgccg 702204
>gb|AE003537.3| Drosophila melanogaster chromosome 3L, section 48 of 83 of the complete sequence Length = 282116 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ctctctctggctgtggacat 259 |||||||||||||||||||| Sbjct: 281084 ctctctctggctgtggacat 281065
>emb|CT010481.8| M.truncatula DNA sequence from clone MTH2-62G7 on chromosome 3, complete sequence Length = 113400 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gtagtagtgaaaaaggcttc 342 |||||||||||||||||||| Sbjct: 1577 gtagtagtgaaaaaggcttc 1558
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 ccggcaacacggtgatcttc 48 |||||||||||||||||||| Sbjct: 900545 ccggcaacacggtgatcttc 900564
>emb|CT485612.7| Mouse DNA sequence from clone RP24-441F13 on chromosome 12, complete sequence Length = 116475 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 agcaggaaggaaggcctggt 362 |||||||||||||||||||| Sbjct: 70748 agcaggaaggaaggcctggt 70729
>gb|AF002254.1|AF002254 Oryza sativa MADS-domain protein gene, partial cds Length = 2246 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gccgccgaagaagcaggagc 214 |||||||||||||||||||| Sbjct: 1744 gccgccgaagaagcaggagc 1725
>emb|CT030175.7| Mouse DNA sequence from clone RP24-470M12 on chromosome 12, complete sequence Length = 156278 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 agcaggaaggaaggcctggt 362 |||||||||||||||||||| Sbjct: 155378 agcaggaaggaaggcctggt 155397
>emb|AL627244.1|HS160J21 Homo sapiens chromosome X sequence from BAC CEPHB160J21 , map Xp21.1 region DXS709-SRPX, complete sequence Length = 150966 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 ctgttagtagtagtgaaaaaggct 340 ||||||||||||| |||||||||| Sbjct: 83662 ctgttagtagtagcgaaaaaggct 83639 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,246,743 Number of Sequences: 3902068 Number of extensions: 4246743 Number of successful extensions: 68869 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68484 Number of HSP's gapped (non-prelim): 384 length of query: 480 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 458 effective length of database: 17,147,199,772 effective search space: 7853417495576 effective search space used: 7853417495576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
