ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags33e09 |
|---|---|
| Clone Library Name | barley_pub |
>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| Length = 1162 Score = 55.5 bits (132), Expect = 1e-07 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 8/159 (5%) Frame = +1 Query: 94 DLVLWRNKKISGGVLAGATAIWLLFEVMEYHLLTLVGHCLILSLATLF-LWSNVCIFIHK 270 DL+ WR+ K +G V + + L V +T +LS+ F ++ V I K Sbjct: 977 DLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQK 1036 Query: 271 SPPNIP-------EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLW 429 S P EV I E+L + S +N + LR + DL L +W Sbjct: 1037 SDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMW 1096 Query: 430 VLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAF 546 V + +G+ N LTL + + L+++PV+YE++ ++D + Sbjct: 1097 VFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHY 1135
>RTN4_RAT (Q9JK11) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Glut4 vesicle 20 kDa protein) Length = 1163 Score = 55.1 bits (131), Expect = 1e-07 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 8/159 (5%) Frame = +1 Query: 94 DLVLWRNKKISGGVLAGATAIWLLFEVMEYHLLTLVGHCLILSLATLF-LWSNVCIFIHK 270 DL+ WR+ K +G V + + L V +T +LS+ F ++ V I K Sbjct: 978 DLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQK 1037 Query: 271 SPPNIP-------EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLW 429 S P EV I E+L + S +N + LR + DL L +W Sbjct: 1038 SDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMW 1097 Query: 430 VLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAF 546 V + +G+ N LTL + + L+++PV+YE++ ++D + Sbjct: 1098 VFTYVGALFNGLTLLILALISLFSIPVIYERHQVQIDHY 1136
>RTN4_HUMAN (Q9NQC3) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Neuroendocrine-specific protein) (NSP) (Neuroendocrine-specific protein C homolog) (RTN-x) (Reticulon-5) Length = 1192 Score = 55.1 bits (131), Expect = 1e-07 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 8/159 (5%) Frame = +1 Query: 94 DLVLWRNKKISGGVLAGATAIWLLFEVMEYHLLTLVGHCLILSLATLF-LWSNVCIFIHK 270 DL+ WR+ K +G V + + L V +T +LS+ F ++ V I K Sbjct: 1007 DLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQK 1066 Query: 271 SPPNIP-------EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLW 429 S P EV I E+L + S +N + LR + DL L +W Sbjct: 1067 SDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMW 1126 Query: 430 VLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAF 546 V + +G+ N LTL + + L++VPV+YE++ ++D + Sbjct: 1127 VFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHY 1165
>RTN1_PANTR (Q5IS59) Reticulon-1| Length = 776 Score = 53.9 bits (128), Expect = 3e-07 Identities = 39/164 (23%), Positives = 82/164 (50%), Gaps = 10/164 (6%) Frame = +1 Query: 85 KPADLVLWRNKKISGGVLAGATAIWLLFEVMEYHLLTLVGHCLILSLATLF---LWSNVC 255 K DL+ WR+ K +G V + + LLF + ++ ++++V + + +L+ ++ +V Sbjct: 588 KAIDLLYWRDIKQTGIVFG--SFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 645 Query: 256 IFIHKSPPNIP-------EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIV 414 + K+ P E+ + ++ L+ +N L LR + +DL L Sbjct: 646 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKF 705 Query: 415 IGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAF 546 +W+L+ +G+ N LTL + V ++T+PV+Y K+ ++D + Sbjct: 706 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQY 749
>RTN1_HUMAN (Q16799) Reticulon-1 (Neuroendocrine-specific protein)| Length = 776 Score = 53.9 bits (128), Expect = 3e-07 Identities = 39/164 (23%), Positives = 82/164 (50%), Gaps = 10/164 (6%) Frame = +1 Query: 85 KPADLVLWRNKKISGGVLAGATAIWLLFEVMEYHLLTLVGHCLILSLATLF---LWSNVC 255 K DL+ WR+ K +G V + + LLF + ++ ++++V + + +L+ ++ +V Sbjct: 588 KAIDLLYWRDIKQTGIVFG--SFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 645 Query: 256 IFIHKSPPNIP-------EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIV 414 + K+ P E+ + ++ L+ +N L LR + +DL L Sbjct: 646 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKF 705 Query: 415 IGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAF 546 +W+L+ +G+ N LTL + V ++T+PV+Y K+ ++D + Sbjct: 706 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQY 749
>RTN3_HUMAN (O95197) Reticulon-3 (Neuroendocrine-specific protein-like 2)| (NSP-like protein II) (NSPLII) Length = 236 Score = 53.9 bits (128), Expect = 3e-07 Identities = 37/162 (22%), Positives = 81/162 (50%), Gaps = 11/162 (6%) Frame = +1 Query: 94 DLVLWRNKKISGGVLAGATAIWLLFEVMEYHLLTLVGHCLILSLATLF---LWSNVCIFI 264 DL+ WR+ K +G V T + +L + + ++++V + ++ L+ ++ +V + Sbjct: 50 DLIFWRDVKKTGFVFG--TTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 107 Query: 265 HKSPPNIPEVKIPEDLTVNIALSLRHE--------INRGLFTLREIGHGRDLKKFLIVIG 420 KS P K D+ + ++ H INR L + + DL L + Sbjct: 108 QKSEEGHP-FKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAV 166 Query: 421 GLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAF 546 +W+++ +G+ N +TL + +++++VP++YEKY ++D + Sbjct: 167 FMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHY 208
>RTN1_MOUSE (Q8K0T0) Reticulon-1 (Neuroendocrine-specific protein)| Length = 780 Score = 53.5 bits (127), Expect = 4e-07 Identities = 40/164 (24%), Positives = 82/164 (50%), Gaps = 10/164 (6%) Frame = +1 Query: 85 KPADLVLWRNKKISGGVLAGATAIWLLFEVMEYHLLTLVGHCLILSLATLF---LWSNVC 255 K DL+ WR+ K +G V + + LLF + ++ ++++V + + +L+ ++ +V Sbjct: 592 KAIDLLYWRDIKQTGIVFG--SFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 649 Query: 256 IFIHKSPPNIP-------EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIV 414 + K+ P E+ + ++ L+ +N L LR + +DL L Sbjct: 650 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKF 709 Query: 415 IGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAF 546 +W+L+ +G+ N LTL + V ++T+PV+Y K+ +VD + Sbjct: 710 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQY 753
>RTN1_RAT (Q64548) Reticulon-1 (Neuroendocrine-specific protein) (S-rex)| Length = 777 Score = 53.5 bits (127), Expect = 4e-07 Identities = 40/164 (24%), Positives = 82/164 (50%), Gaps = 10/164 (6%) Frame = +1 Query: 85 KPADLVLWRNKKISGGVLAGATAIWLLFEVMEYHLLTLVGHCLILSLATLF---LWSNVC 255 K DL+ WR+ K +G V + + LLF + ++ ++++V + + +L+ ++ +V Sbjct: 589 KAIDLLYWRDIKQTGIVFG--SFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 646 Query: 256 IFIHKSPPNIP-------EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIV 414 + K+ P E+ + ++ L+ +N L LR + +DL L Sbjct: 647 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKF 706 Query: 415 IGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAF 546 +W+L+ +G+ N LTL + V ++T+PV+Y K+ +VD + Sbjct: 707 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQY 750
>RTN3_MOUSE (Q9ES97) Reticulon-3| Length = 237 Score = 51.6 bits (122), Expect = 2e-06 Identities = 35/162 (21%), Positives = 81/162 (50%), Gaps = 11/162 (6%) Frame = +1 Query: 94 DLVLWRNKKISGGVLAGATAIWLLFEVMEYHLLTLVGHCLILSLATLF---LWSNVCIFI 264 DL+ WR+ K +G V T + +L + + ++++V + ++ L+ ++ +V + Sbjct: 51 DLIFWRDVKKTGFVFG--TTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 108 Query: 265 HKSPPNIPEVKIPEDLTVNIALSLRHE--------INRGLFTLREIGHGRDLKKFLIVIG 420 KS P K D+ + ++ H +N+ L + + DL L + Sbjct: 109 QKSEEGHP-FKAYLDVDITLSSEAFHNYMNAAMVHVNKALKLIIRLFLVEDLVDSLKLAV 167 Query: 421 GLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAF 546 +W+++ +G+ N +TL + +++++VP++YEKY ++D + Sbjct: 168 FMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHY 209
>RTN2_MOUSE (O70622) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 471 Score = 51.2 bits (121), Expect = 2e-06 Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 10/162 (6%) Frame = +1 Query: 91 ADLVLWRNKKISGGVLAGATAIWLLFEVMEYHLLTLVGHCLILSLA---TLFLWSNVCIF 261 ADL+ W++ + SG V G A L ++ + ++++ H +L L +L ++ V Sbjct: 273 ADLLYWKDTRTSGAVFTGLMASLLC--LLHFSIVSVAAHLALLGLCATISLRVYRKVLQA 330 Query: 262 IHKSPPNIP-------EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIG 420 +H+ P ++ + + T ++ + + LR DL L + Sbjct: 331 VHRGDGTNPFQAYLDMDLTLTREQTERLSQQIASHVVSTATQLRHFFLVEDLVDSLKLAL 390 Query: 421 GLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAF 546 ++L+ +G+ N LTL + V L+TVP+LY ++ ++D + Sbjct: 391 LFYILTFVGAIFNGLTLVILGVVALFTVPLLYRQHQAQIDQY 432
>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 545 Score = 50.1 bits (118), Expect = 5e-06 Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 15/171 (8%) Frame = +1 Query: 79 GGKPADLVLWRNKKISGGVLAGATAIWLLFEVMEYHLLTLVGHCLILSLA---TLFLWSN 249 G K ADL+ W++ + SG V G L ++ + ++++ H +L L +L ++ Sbjct: 342 GSKVADLLYWKDTRTSGVVFTGLMVSLLC--LLHFSIVSVAAHLALLLLCGTISLRVYRK 399 Query: 250 VCIFIHKSPPNIP-EVKIPEDLTVNIALS--LRHEINRGLFTLREIGHGRDLKKFLIV-- 414 V +H+ P + + DLT+ + L H+I T R + L+ F +V Sbjct: 400 VLQAVHRGDGANPFQAYLDVDLTLTREQTERLSHQI-----TSRVVSAATQLRHFFLVED 454 Query: 415 -IGGL------WVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAF 546 + L ++L+ +G+ N LTL + + L+T+P+LY ++ ++D + Sbjct: 455 LVDSLKLALLFYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQY 505
>Y779_METJA (Q58189) Hypothetical protein MJ0779| Length = 299 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Frame = +1 Query: 337 RHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTL-SYIVFVVLYTVPVL 513 + I R + +++G D KKF++++ + + +L S LTL S I+FVV+Y L Sbjct: 10 KRTIKRNIILFKKLGKDFDEKKFILLLIIIAAIPLLISYYLHLTLKSMIIFVVIYVGAAL 69 Query: 514 YEK---YDDKVD 540 + Y++K++ Sbjct: 70 FIPSILYENKIE 81
>Y393_PYRAB (Q9V1N4) UPF0278 protein PYRAB03930| Length = 204 Score = 31.6 bits (70), Expect = 1.7 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = +1 Query: 256 IFIHKSPPNIPEVKIPEDLTVNIALSLRHEINRGL 360 ++I K PPN+ ++KIP + + +R +++GL Sbjct: 69 LYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGL 103
>Y1880_PYRFU (Q8TH04) UPF0278 protein PF1880| Length = 199 Score = 31.6 bits (70), Expect = 1.7 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = +1 Query: 256 IFIHKSPPNIPEVKIPEDLTVNIALSLRHEINRGL 360 ++I K PPN+ ++KIP + + +R +++GL Sbjct: 67 LYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGL 101
>Y1839_PYRHO (O59517) UPF0278 protein PH1839| Length = 204 Score = 31.6 bits (70), Expect = 1.7 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = +1 Query: 256 IFIHKSPPNIPEVKIPEDLTVNIALSLRHEINRGL 360 ++I K PPN+ ++KIP + + +R +++GL Sbjct: 69 LYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGL 103
>RTN2_YEAST (Q12443) Reticulon-like protein 2| Length = 393 Score = 30.8 bits (68), Expect = 2.9 Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 9/157 (5%) Frame = +1 Query: 97 LVLWRNKKISGGVLAGA-TAIWLLFEVMEYHLLTLVGHCLI-------LSLATLFLWSNV 252 L+ W N SG A ++ +L V +L +G+ ++ LS LF V Sbjct: 33 LIYWTNPSKSGASFAATLVSLLILRNVNVISVLLKIGYMVLFTSFAVELSTKVLFDKGVV 92 Query: 253 CIFIHKSPPNIPEVKIPE-DLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLW 429 F + P++ V P D ++ +L I + +F R F I + L+ Sbjct: 93 SRFGMQESPDLVGVLKPHIDRELDRLPALEDRIRKLVFA------HRTRNNFTIGVS-LY 145 Query: 430 VLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVD 540 L L + + T+ + + LYTVP++Y++ ++D Sbjct: 146 FLHGLFAIFSMNTVLIMTTIFLYTVPLIYDRKQARID 182
>PK1L1_MOUSE (Q8R526) Polycystic kidney disease 1-like 1 protein| (Polycystin-1L1) (Fragment) Length = 531 Score = 29.6 bits (65), Expect = 6.4 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = -3 Query: 177 HDLEQQPDGRSASEHPSGDLLVPP*NKISRLAAAEDGV 64 HD +PD R S HP+ DLL P ++ R+AA+ V Sbjct: 320 HDSSGRPDSRHPSPHPTSDLL-PWTDQAWRIAASSSAV 356
>TSN4_MOUSE (Q9DCK3) Tetraspanin-4 (Tspan-4) (Transmembrane 4 superfamily| member 7) Length = 238 Score = 29.6 bits (65), Expect = 6.4 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%) Frame = +1 Query: 403 FLIVIGGLWVLSVL--GSCC--NFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEK 555 F++ IG + + L C F L +VF++ T+ VL+ Y DK+D++ ++ Sbjct: 63 FVMAIGFVGCIGALKENKCLLLTFFVLLLLVFLLEATIAVLFFAYSDKIDSYAQQ 117
>RTN1_YEAST (Q04947) Reticulon-like protein 1| Length = 295 Score = 29.6 bits (65), Expect = 6.4 Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 12/162 (7%) Frame = +1 Query: 94 DLVLWRNKKISGGVLAGAT-AIWLLFEVMEYHLLTLVGHCLILSLATLFLWSNVCI---- 258 DL+LWRN +G G+ A+ +L +V V + ++ + ++ S + + Sbjct: 22 DLLLWRNPVQTGKYFGGSLLALLILKKVNLITFFLKVAYTILFTTGSIEFVSKLFLGQGL 81 Query: 259 FIHKSPPNIPEVKIPEDLTVNIALSLRHEINRGLFTL-------REIGHGRDLKKFLIVI 417 P P NIA ++ I+ L L R+ + K Sbjct: 82 ITKYGPKECP----------NIAGFIKPHIDEALKQLPVFQAHIRKTVFAQVPKHTFKTA 131 Query: 418 GGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDA 543 L++L S + T+ ++ + +T+PV+Y Y ++DA Sbjct: 132 VALFLLHKFFSWFSIWTIVFVADIFTFTLPVIYHSYKHEIDA 173
>E434_ADEM1 (P23125) Probable early E4 33 kDa protein (ORF A/B protein)| Length = 289 Score = 29.3 bits (64), Expect = 8.3 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +1 Query: 199 VGHCLILSLATLFLWSNVCIFIHKSPPNIPEVKIPEDLTVNIALSLRH 342 V HC+ L TL W N+ + S P IP IP + T + + H Sbjct: 225 VDHCMRLLSFTLRRWQNLLLGRSGSSPLIPGFDIPRNRTERLRQRMLH 272 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,645,538 Number of Sequences: 219361 Number of extensions: 1560291 Number of successful extensions: 5337 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5179 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5333 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
