| Clone Name | bags32o24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08 map R2847, complete sequence Length = 100918 Score = 573 bits (289), Expect = e-160 Identities = 549/633 (86%), Gaps = 2/633 (0%) Strand = Plus / Plus Query: 6 gtggccctcaggcgcatcctatgagggcgacttccgtggaggttt-atcgacggaacagg 64 |||||| || || ||||||||||| || ||||||||||||||||| || || ||| |||| Sbjct: 21959 gtggccttctggtgcatcctatgaaggtgacttccgtggaggtttcattgatggagcagg 22018 Query: 65 cactttcaagggggtcgacggctcggtttacaaaggttcttggaggatgaacaaaaagca 124 |||||||||||| || || ||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 22019 cactttcaagggagttgatggctcagtttacaaaggttcttggaggatgaacaagaagca 22078 Query: 125 gggaatggggacaatggtttactcaaactctgacagttatgaaggtctgtggaacgaggg 184 || |||||||||||||||||||| ||||| |||| |||||||||| | ||||| || || Sbjct: 22079 tggtatggggacaatggtttactctaactccgacacttatgaaggtttctggaatgaagg 22138 Query: 185 tttgccggatggatatggtaaatatacatgggctgctggcaacatctacattggtagctg 244 ||| || |||| || ||||||||| |||||||||| ||||||| | |||||||| || || Sbjct: 22139 tttacctgatgaatttggtaaatacacatgggctgatggcaacgtatacattggaagatg 22198 Query: 245 gaagtcaggtagcatgaacggccgaggcgtaatgcagtgggtaaatggtgatactcttga 304 ||| ||||| | ||||| ||| | || |||||||||||| ||||||||||||||||||| Sbjct: 22199 gaaatcaggcaaaatgaatggcagcggggtaatgcagtggataaatggtgatactcttga 22258 Query: 305 ctgtaattggctcaatgggctggctcatggcaaaggttactgcaaatatgcgtcaggggc 364 |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| Sbjct: 22259 ctgtaattggctcaatggcctggctcatggcaaaggttactgcaaatatgcatctggggc 22318 Query: 365 atgttacattggtacgtgggataggggagtcaaggatggccatggcatattttatcaacc 424 || ||||||||||| |||||||| ||| | |||||||||||||| | |||||||||||| Sbjct: 22319 ttgctacattggtacatgggatagaggactaaaggatggccatggtacattttatcaacc 22378 Query: 425 aggaagtaaaataccttgtaaccttgaagtttctgagtgtgcaacaaataatgatggtac 484 ||||| ||||| ||||||||||||||||||||||| ||| ||||| | |||||||||| Sbjct: 22379 tggaagcaaaattccttgtaaccttgaagtttctgactgtctaacaagtcatgatggtac 22438 Query: 485 aagtgcttcaagttctagtaatgaaaaggtcaaagttggacctgttgtttctattgcaaa 544 |||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||| Sbjct: 22439 aagtgcttcaagttctagtaatgaaaagatcactattgga-ctgttatttctattgcaaa 22497 Query: 545 atctgtgcaacaaatggggtctacgtaggttttttcatcgtcccaggcgcatttcaaatg 604 | |||||||| || ||| | | ||||||||| ||||||| ||||| || |||||||||| Sbjct: 22498 aactgtgcaagaattggaggttgcgtaggtttcttcatcggcccagacgtatttcaaatg 22557 Query: 605 gcacaacaccaatttttgttgatgattctggaa 637 | || |||||| |||| | |||| ||||||||| Sbjct: 22558 gtaccacaccagttttcgatgataattctggaa 22590
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 573 bits (289), Expect = e-160 Identities = 549/633 (86%), Gaps = 2/633 (0%) Strand = Plus / Plus Query: 6 gtggccctcaggcgcatcctatgagggcgacttccgtggaggttt-atcgacggaacagg 64 |||||| || || ||||||||||| || ||||||||||||||||| || || ||| |||| Sbjct: 27889797 gtggccttctggtgcatcctatgaaggtgacttccgtggaggtttcattgatggagcagg 27889856 Query: 65 cactttcaagggggtcgacggctcggtttacaaaggttcttggaggatgaacaaaaagca 124 |||||||||||| || || ||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 27889857 cactttcaagggagttgatggctcagtttacaaaggttcttggaggatgaacaagaagca 27889916 Query: 125 gggaatggggacaatggtttactcaaactctgacagttatgaaggtctgtggaacgaggg 184 || |||||||||||||||||||| ||||| |||| |||||||||| | ||||| || || Sbjct: 27889917 tggtatggggacaatggtttactctaactccgacacttatgaaggtttctggaatgaagg 27889976 Query: 185 tttgccggatggatatggtaaatatacatgggctgctggcaacatctacattggtagctg 244 ||| || |||| || ||||||||| |||||||||| ||||||| | |||||||| || || Sbjct: 27889977 tttacctgatgaatttggtaaatacacatgggctgatggcaacgtatacattggaagatg 27890036 Query: 245 gaagtcaggtagcatgaacggccgaggcgtaatgcagtgggtaaatggtgatactcttga 304 ||| ||||| | ||||| ||| | || |||||||||||| ||||||||||||||||||| Sbjct: 27890037 gaaatcaggcaaaatgaatggcagcggggtaatgcagtggataaatggtgatactcttga 27890096 Query: 305 ctgtaattggctcaatgggctggctcatggcaaaggttactgcaaatatgcgtcaggggc 364 |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| Sbjct: 27890097 ctgtaattggctcaatggcctggctcatggcaaaggttactgcaaatatgcatctggggc 27890156 Query: 365 atgttacattggtacgtgggataggggagtcaaggatggccatggcatattttatcaacc 424 || ||||||||||| |||||||| ||| | |||||||||||||| | |||||||||||| Sbjct: 27890157 ttgctacattggtacatgggatagaggactaaaggatggccatggtacattttatcaacc 27890216 Query: 425 aggaagtaaaataccttgtaaccttgaagtttctgagtgtgcaacaaataatgatggtac 484 ||||| ||||| ||||||||||||||||||||||| ||| ||||| | |||||||||| Sbjct: 27890217 tggaagcaaaattccttgtaaccttgaagtttctgactgtctaacaagtcatgatggtac 27890276 Query: 485 aagtgcttcaagttctagtaatgaaaaggtcaaagttggacctgttgtttctattgcaaa 544 |||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||| Sbjct: 27890277 aagtgcttcaagttctagtaatgaaaagatcactattgga-ctgttatttctattgcaaa 27890335 Query: 545 atctgtgcaacaaatggggtctacgtaggttttttcatcgtcccaggcgcatttcaaatg 604 | |||||||| || ||| | | ||||||||| ||||||| ||||| || |||||||||| Sbjct: 27890336 aactgtgcaagaattggaggttgcgtaggtttcttcatcggcccagacgtatttcaaatg 27890395 Query: 605 gcacaacaccaatttttgttgatgattctggaa 637 | || |||||| |||| | |||| ||||||||| Sbjct: 27890396 gtaccacaccagttttcgatgataattctggaa 27890428
>emb|AJ544688.1|OSA544688 Oryza sativa (japonica cultivar-group) mRNA for phosphatidylinositol 4-phosphate 5-kinase (pipk1 gene) Length = 2438 Score = 573 bits (289), Expect = e-160 Identities = 549/633 (86%), Gaps = 2/633 (0%) Strand = Plus / Plus Query: 6 gtggccctcaggcgcatcctatgagggcgacttccgtggaggttt-atcgacggaacagg 64 |||||| || || ||||||||||| || ||||||||||||||||| || || ||| |||| Sbjct: 240 gtggccttctggtgcatcctatgaaggtgacttccgtggaggtttcattgatggagcagg 299 Query: 65 cactttcaagggggtcgacggctcggtttacaaaggttcttggaggatgaacaaaaagca 124 |||||||||||| || || ||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 300 cactttcaagggagttgatggctcagtttacaaaggttcttggaggatgaacaagaagca 359 Query: 125 gggaatggggacaatggtttactcaaactctgacagttatgaaggtctgtggaacgaggg 184 || |||||||||||||||||||| ||||| |||| |||||||||| | ||||| || || Sbjct: 360 tggtatggggacaatggtttactctaactccgacacttatgaaggtttctggaatgaagg 419 Query: 185 tttgccggatggatatggtaaatatacatgggctgctggcaacatctacattggtagctg 244 ||| || |||| || ||||||||| |||||||||| ||||||| | |||||||| || || Sbjct: 420 tttacctgatgaatttggtaaatacacatgggctgatggcaacgtatacattggaagatg 479 Query: 245 gaagtcaggtagcatgaacggccgaggcgtaatgcagtgggtaaatggtgatactcttga 304 ||| ||||| | ||||| ||| | || |||||||||||| ||||||||||||||||||| Sbjct: 480 gaaatcaggcaaaatgaatggcagcggggtaatgcagtggataaatggtgatactcttga 539 Query: 305 ctgtaattggctcaatgggctggctcatggcaaaggttactgcaaatatgcgtcaggggc 364 |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| Sbjct: 540 ctgtaattggctcaatggcctggctcatggcaaaggttactgcaaatatgcatctggggc 599 Query: 365 atgttacattggtacgtgggataggggagtcaaggatggccatggcatattttatcaacc 424 || ||||||||||| |||||||| ||| | |||||||||||||| | |||||||||||| Sbjct: 600 ttgctacattggtacatgggatagaggactaaaggatggccatggtacattttatcaacc 659 Query: 425 aggaagtaaaataccttgtaaccttgaagtttctgagtgtgcaacaaataatgatggtac 484 ||||| ||||| ||||||||||||||||||||||| ||| ||||| | |||||||||| Sbjct: 660 tggaagcaaaattccttgtaaccttgaagtttctgactgtctaacaagtcatgatggtac 719 Query: 485 aagtgcttcaagttctagtaatgaaaaggtcaaagttggacctgttgtttctattgcaaa 544 |||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||| Sbjct: 720 aagtgcttcaagttctagtaatgaaaagatcactattgga-ctgttatttctattgcaaa 778 Query: 545 atctgtgcaacaaatggggtctacgtaggttttttcatcgtcccaggcgcatttcaaatg 604 | |||||||| || ||| | | ||||||||| ||||||| ||||| || |||||||||| Sbjct: 779 aactgtgcaagaattggaggttgcgtaggtttcttcatcggcccagacgtatttcaaatg 838 Query: 605 gcacaacaccaatttttgttgatgattctggaa 637 | || |||||| |||| | |||| ||||||||| Sbjct: 839 gtaccacaccagttttcgatgataattctggaa 871
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 573 bits (289), Expect = e-160 Identities = 549/633 (86%), Gaps = 2/633 (0%) Strand = Plus / Plus Query: 6 gtggccctcaggcgcatcctatgagggcgacttccgtggaggttt-atcgacggaacagg 64 |||||| || || ||||||||||| || ||||||||||||||||| || || ||| |||| Sbjct: 27981121 gtggccttctggtgcatcctatgaaggtgacttccgtggaggtttcattgatggagcagg 27981180 Query: 65 cactttcaagggggtcgacggctcggtttacaaaggttcttggaggatgaacaaaaagca 124 |||||||||||| || || ||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 27981181 cactttcaagggagttgatggctcagtttacaaaggttcttggaggatgaacaagaagca 27981240 Query: 125 gggaatggggacaatggtttactcaaactctgacagttatgaaggtctgtggaacgaggg 184 || |||||||||||||||||||| ||||| |||| |||||||||| | ||||| || || Sbjct: 27981241 tggtatggggacaatggtttactctaactccgacacttatgaaggtttctggaatgaagg 27981300 Query: 185 tttgccggatggatatggtaaatatacatgggctgctggcaacatctacattggtagctg 244 ||| || |||| || ||||||||| |||||||||| ||||||| | |||||||| || || Sbjct: 27981301 tttacctgatgaatttggtaaatacacatgggctgatggcaacgtatacattggaagatg 27981360 Query: 245 gaagtcaggtagcatgaacggccgaggcgtaatgcagtgggtaaatggtgatactcttga 304 ||| ||||| | ||||| ||| | || |||||||||||| ||||||||||||||||||| Sbjct: 27981361 gaaatcaggcaaaatgaatggcagcggggtaatgcagtggataaatggtgatactcttga 27981420 Query: 305 ctgtaattggctcaatgggctggctcatggcaaaggttactgcaaatatgcgtcaggggc 364 |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| Sbjct: 27981421 ctgtaattggctcaatggcctggctcatggcaaaggttactgcaaatatgcatctggggc 27981480 Query: 365 atgttacattggtacgtgggataggggagtcaaggatggccatggcatattttatcaacc 424 || ||||||||||| |||||||| ||| | |||||||||||||| | |||||||||||| Sbjct: 27981481 ttgctacattggtacatgggatagaggactaaaggatggccatggtacattttatcaacc 27981540 Query: 425 aggaagtaaaataccttgtaaccttgaagtttctgagtgtgcaacaaataatgatggtac 484 ||||| ||||| ||||||||||||||||||||||| ||| ||||| | |||||||||| Sbjct: 27981541 tggaagcaaaattccttgtaaccttgaagtttctgactgtctaacaagtcatgatggtac 27981600 Query: 485 aagtgcttcaagttctagtaatgaaaaggtcaaagttggacctgttgtttctattgcaaa 544 |||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||| Sbjct: 27981601 aagtgcttcaagttctagtaatgaaaagatcactattgga-ctgttatttctattgcaaa 27981659 Query: 545 atctgtgcaacaaatggggtctacgtaggttttttcatcgtcccaggcgcatttcaaatg 604 | |||||||| || ||| | | ||||||||| ||||||| ||||| || |||||||||| Sbjct: 27981660 aactgtgcaagaattggaggttgcgtaggtttcttcatcggcccagacgtatttcaaatg 27981719 Query: 605 gcacaacaccaatttttgttgatgattctggaa 637 | || |||||| |||| | |||| ||||||||| Sbjct: 27981720 gtaccacaccagttttcgatgataattctggaa 27981752
>emb|AJ439082.1|OSA439082 Oryza sativa partial mRNA for phosphatidylinositol-4-phosphate 5-kinase (PIPK1 gene) Length = 2132 Score = 498 bits (251), Expect = e-137 Identities = 468/539 (86%), Gaps = 1/539 (0%) Strand = Plus / Plus Query: 99 ggttcttggaggatgaacaaaaagcagggaatggggacaatggtttactcaaactctgac 158 |||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| ||| Sbjct: 1 ggttcttggaggatgaacaagaagcatggtatggggacaatggtttactctaactccgac 60 Query: 159 agttatgaaggtctgtggaacgagggtttgccggatggatatggtaaatatacatgggct 218 | |||||||||| | ||||| || ||||| || |||| || ||||||||| ||||||||| Sbjct: 61 acttatgaaggtttctggaatgaaggtttacctgatgaatttggtaaatacacatgggct 120 Query: 219 gctggcaacatctacattggtagctggaagtcaggtagcatgaacggccgaggcgtaatg 278 | ||||||| | |||||||| || ||||| ||||| | ||||| ||| | || |||||| Sbjct: 121 gatggcaacgtatacattggaagatggaaatcaggcaaaatgaatggcagcggggtaatg 180 Query: 279 cagtgggtaaatggtgatactcttgactgtaattggctcaatgggctggctcatggcaaa 338 |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 181 cagtggataaatggtgatactcttgactgtaattggctcaatggcctggctcatggcaaa 240 Query: 339 ggttactgcaaatatgcgtcaggggcatgttacattggtacgtgggataggggagtcaag 398 ||||||||||||||||| || ||||| || ||||||||||| |||||||| ||| | ||| Sbjct: 241 ggttactgcaaatatgcatctggggcttgctacattggtacatgggatagaggactaaag 300 Query: 399 gatggccatggcatattttatcaaccaggaagtaaaataccttgtaaccttgaagtttct 458 ||||||||||| | |||||||||||| ||||| ||||| ||||||||||||||||||||| Sbjct: 301 gatggccatggtacattttatcaacctggaagcaaaattccttgtaaccttgaagtttct 360 Query: 459 gagtgtgcaacaaataatgatggtacaagtgcttcaagttctagtaatgaaaaggtcaaa 518 || ||| ||||| | |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 361 gactgtctaacaagtcatgatggtacaagtgcttcaagttctagtaatgaaaagatcact 420 Query: 519 gttggacctgttgtttctattgcaaaatctgtgcaacaaatggggtctacgtaggttttt 578 ||||| ||||| |||||||||||||| |||||||| || ||| | | ||||||||| | Sbjct: 421 attgga-ctgttatttctattgcaaaaactgtgcaagaattggaggttgcgtaggtttct 479 Query: 579 tcatcgtcccaggcgcatttcaaatggcacaacaccaatttttgttgatgattctggaa 637 |||||| ||||| || ||||||||||| || |||||| |||| | |||| ||||||||| Sbjct: 480 tcatcggcccagacgtatttcaaatggtaccacaccagttttcgatgataattctggaa 538
>gb|AC169376.2| Sorghum bicolor clone SB_BBc0046M17, complete sequence Length = 127914 Score = 359 bits (181), Expect = 7e-96 Identities = 392/461 (85%), Gaps = 1/461 (0%) Strand = Plus / Plus Query: 6 gtggccctcaggcgcatcctatgagggcgacttccgtggaggttt-atcgacggaacagg 64 |||||| |||||||| || ||||| || || || |||||||||| || || |||||||| Sbjct: 69544 gtggccttcaggcgcttcatatgatggagatctctgtggaggtttcattgatggaacagg 69603 Query: 65 cactttcaagggggtcgacggctcggtttacaaaggttcttggaggatgaacaaaaagca 124 ||||||||| || || || || || ||||| |||||||||||||||||||||||||| || Sbjct: 69604 cactttcaaaggagttgatggatctgtttataaaggttcttggaggatgaacaaaaaaca 69663 Query: 125 gggaatggggacaatggtttactcaaactctgacagttatgaaggtctgtggaacgaggg 184 |||||||| ||||||||||| | || ||| | ||| |||||| | ||||||||||| Sbjct: 69664 tggaatgggcacaatggtttatgccaatggtgatacttacgaaggtttatggaacgaggg 69723 Query: 185 tttgccggatggatatggtaaatatacatgggctgctggcaacatctacattggtagctg 244 ||||| ||||||| ||||||||||||||||| || |||||||||||||||||| | || Sbjct: 69724 cttgccagatggatttggtaaatatacatgggttgatggcaacatctacattggaggatg 69783 Query: 245 gaagtcaggtagcatgaacggccgaggcgtaatgcagtgggtaaatggtgatactcttga 304 ||| || |||| ||||| ||| |||| || ||||| ||| |||||| ||||||||||| Sbjct: 69784 gaaatctggtaaaatgaatggcagaggagtgatgcaatggacaaatggcgatactcttga 69843 Query: 305 ctgtaattggctcaatgggctggctcatggcaaaggttactgcaaatatgcgtcaggggc 364 |||||||||||| ||||| ||||||||||| ||||||| || |||||||| |||||||| Sbjct: 69844 ctgtaattggcttaatggactggctcatggaaaaggtttttgtaaatatgcatcaggggc 69903 Query: 365 atgttacattggtacgtgggataggggagtcaaggatggccatggcatattttatcaacc 424 ||||||||||||||| ||||| || ||| ||||||| || |||||||| ||||||||||| Sbjct: 69904 atgttacattggtacatgggacagaggactcaaggacggacatggcatgttttatcaacc 69963 Query: 425 aggaagtaaaataccttgtaaccttgaagtttctgagtgtg 465 |||||||||||| ||||||||||||||||| || ||||||| Sbjct: 69964 aggaagtaaaatgccttgtaaccttgaagtgtccgagtgtg 70004 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Plus Query: 586 cccaggcgcatttcaaatggcacaacaccaatttttgttgatgattctggaaat 639 ||||| || |||||||||||||| |||||| |||||| |||| ||||||||||| Sbjct: 70124 cccagacgtatttcaaatggcaccacaccagtttttgatgataattctggaaat 70177
>dbj|AK065869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045E16, full insert sequence Length = 1978 Score = 210 bits (106), Expect = 4e-51 Identities = 209/242 (86%), Gaps = 1/242 (0%) Strand = Plus / Plus Query: 396 aaggatggccatggcatattttatcaaccaggaagtaaaataccttgtaaccttgaagtt 455 |||||||||||||| | |||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 7 aaggatggccatggtacattttatcaacctggaagcaaaattccttgtaaccttgaagtt 66 Query: 456 tctgagtgtgcaacaaataatgatggtacaagtgcttcaagttctagtaatgaaaaggtc 515 ||||| ||| ||||| | |||||||||||||||||||||||||||||||||||||| || Sbjct: 67 tctgactgtctaacaagtcatgatggtacaagtgcttcaagttctagtaatgaaaagatc 126 Query: 516 aaagttggacctgttgtttctattgcaaaatctgtgcaacaaatggggtctacgtaggtt 575 | ||||| ||||| |||||||||||||| |||||||| || ||| | | |||||||| Sbjct: 127 actattgga-ctgttatttctattgcaaaaactgtgcaagaattggaggttgcgtaggtt 185 Query: 576 ttttcatcgtcccaggcgcatttcaaatggcacaacaccaatttttgttgatgattctgg 635 | ||||||| ||||| || ||||||||||| || |||||| |||| | |||| ||||||| Sbjct: 186 tcttcatcggcccagacgtatttcaaatggtaccacaccagttttcgatgataattctgg 245 Query: 636 aa 637 || Sbjct: 246 aa 247
>emb|AL163218.2|HS21C018 Homo sapiens chromosome 21 segment HS21C018 Length = 340000 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 509 aaaggtcaaagttggacctgttg 531 ||||||||||||||||||||||| Sbjct: 86248 aaaggtcaaagttggacctgttg 86226
>gb|AC106806.2| Homo sapiens chromosome 5 clone RP11-510I6, complete sequence Length = 162485 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 239 tagctggaagtcaggtagcatga 261 ||||||||||||||||||||||| Sbjct: 40018 tagctggaagtcaggtagcatga 40040
>gb|AC034219.5| Homo sapiens chromosome 5 clone CTD-2028K10, complete sequence Length = 120324 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 239 tagctggaagtcaggtagcatga 261 ||||||||||||||||||||||| Sbjct: 37749 tagctggaagtcaggtagcatga 37727
>dbj|BS000043.1| Pan troglodytes chromosome 22 clone:RP43-169N06, map 22, complete sequences Length = 189421 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 509 aaaggtcaaagttggacctgttg 531 ||||||||||||||||||||||| Sbjct: 93958 aaaggtcaaagttggacctgttg 93936
>emb|AL109763.2|HSP10238 Homo sapiens chromosome 21 sequence from PAC RPCI-1 238P10 map 21q21 region D21S189-LA297, complete sequence Length = 131414 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 509 aaaggtcaaagttggacctgttg 531 ||||||||||||||||||||||| Sbjct: 14647 aaaggtcaaagttggacctgttg 14625
>gb|AC018814.6| Homo sapiens chromosome 3 clone RP11-204C23 map 3p, complete sequence Length = 166162 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 239 tagctggaagtcaggtagcatga 261 ||||||||||||||||||||||| Sbjct: 71700 tagctggaagtcaggtagcatga 71722
>gb|AC115789.9| Mus musculus chromosome 18, clone RP23-398N2, complete sequence Length = 206108 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 89 ggtttacaaaggttcttggagg 110 |||||||||||||||||||||| Sbjct: 76126 ggtttacaaaggttcttggagg 76147
>gb|AC103710.2| Homo sapiens chromosome 11, clone CTD-2379P15, complete sequence Length = 151970 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 618 ttttgttgatgattctggaaat 639 |||||||||||||||||||||| Sbjct: 29095 ttttgttgatgattctggaaat 29116
>gb|AC091984.3| Homo sapiens chromosome 5 clone RP11-569B13, complete sequence Length = 207040 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 239 tagctggaagtcaggtagcatg 260 |||||||||||||||||||||| Sbjct: 36598 tagctggaagtcaggtagcatg 36619
>gb|AC011711.8| Homo sapiens chromosome 11, clone RP11-309J20, complete sequence Length = 149542 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 618 ttttgttgatgattctggaaat 639 |||||||||||||||||||||| Sbjct: 98352 ttttgttgatgattctggaaat 98373
>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence Length = 1608198 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 tgagggcgacttccgtggag 46 |||||||||||||||||||| Sbjct: 365506 tgagggcgacttccgtggag 365487
>gb|AC159432.1| Trypanosoma brucei chromosome 5 clone RPCI93-28F8, complete sequence Length = 140539 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tgagggcgacttccgtggag 46 |||||||||||||||||||| Sbjct: 28020 tgagggcgacttccgtggag 28039
>ref|XM_819274.1| Trypanosoma brucei TREU927 clone RPCI93-28F8 hypothetical protein (Tb927.5.1120) partial mRNA Length = 18189 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 tgagggcgacttccgtggag 46 |||||||||||||||||||| Sbjct: 93 tgagggcgacttccgtggag 74
>ref|XM_803335.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509459.50) partial mRNA Length = 1983 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ccggatggatatggtaaata 208 |||||||||||||||||||| Sbjct: 1833 ccggatggatatggtaaata 1852
>ref|XM_814173.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506357.80) partial mRNA Length = 4668 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 597 ttcaaatggcacaacaccaatttt 620 ||||||| |||||||||||||||| Sbjct: 2982 ttcaaatagcacaacaccaatttt 3005
>gb|AC122330.4| Mus musculus BAC clone RP23-342G7 from chromosome 18, complete sequence Length = 194291 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 tgaaaaggtcaaagttggac 525 |||||||||||||||||||| Sbjct: 155783 tgaaaaggtcaaagttggac 155802
>ref|XM_947888.1| Theileria annulata strain Ankara hypothetical protein (TA07775) partial mRNA Length = 453 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 527 tgttgtttctattgcaaaatctgt 550 ||||||||||||||| |||||||| Sbjct: 97 tgttgtttctattgcgaaatctgt 74
>gb|AC124962.19| Medicago truncatula clone mth2-24d19, complete sequence Length = 126541 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 ttcaagttctagtaatgaaa 510 |||||||||||||||||||| Sbjct: 91305 ttcaagttctagtaatgaaa 91286
>gb|AC123975.16| Medicago truncatula clone mth2-12m13, complete sequence Length = 121884 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 ttcaagttctagtaatgaaa 510 |||||||||||||||||||| Sbjct: 107440 ttcaagttctagtaatgaaa 107459
>gb|AC112222.2| Homo sapiens chromosome 3 clone RP11-114A11, complete sequence Length = 151031 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 tagctggaagtcaggtagcatgaa 262 ||||| |||||||||||||||||| Sbjct: 60286 tagcttgaagtcaggtagcatgaa 60309
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 ccatggcatattttatcaac 423 |||||||||||||||||||| Sbjct: 2039682 ccatggcatattttatcaac 2039663
>gb|AC074138.5| Homo sapiens chromosome 19 clone CTD-3234P18, complete sequence Length = 200418 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 gcatattttatcaaccagga 428 |||||||||||||||||||| Sbjct: 163257 gcatattttatcaaccagga 163276
>gb|AC012312.9| Homo sapiens chromosome 5 clone CTC-558O19, complete sequence Length = 181226 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 238 gtagctggaagtcaggtagcatga 261 |||||| ||||||||||||||||| Sbjct: 148186 gtagcttgaagtcaggtagcatga 148163
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 tacatgggctgctggcaaca 228 |||||||||||||||||||| Sbjct: 24731224 tacatgggctgctggcaaca 24731205
>gb|AC008264.10|AC008264 Homo sapiens chromosome 7 clone RP11-180C16, complete sequence Length = 162694 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 atggcaaaggttactgcaaatatg 354 |||||||| ||||||||||||||| Sbjct: 60526 atggcaaatgttactgcaaatatg 60549
>gb|AC073895.22| Homo sapiens 3 BAC RP11-622L21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167311 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 ggatatggtaaatatacatg 214 |||||||||||||||||||| Sbjct: 8181 ggatatggtaaatatacatg 8162
>dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0040H10 Length = 132919 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 tacatgggctgctggcaaca 228 |||||||||||||||||||| Sbjct: 87161 tacatgggctgctggcaaca 87142
>gb|AC171733.1| Lycopersicon esculentum chromosome 11 clone C11HBa0034I10, complete sequence Length = 95704 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 tgcaaaatctgtgcaacaaa 558 |||||||||||||||||||| Sbjct: 43562 tgcaaaatctgtgcaacaaa 43543 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,016,634 Number of Sequences: 3902068 Number of extensions: 6016634 Number of successful extensions: 106743 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106546 Number of HSP's gapped (non-prelim): 187 length of query: 648 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 625 effective length of database: 17,143,297,704 effective search space: 10714561065000 effective search space used: 10714561065000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)