>PKNA_MYCTU (P65726) Probable serine/threonine-protein kinase pknA (EC|
           2.7.11.1)
          Length = 431

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = -1

Query: 182 RAGRRPAQQQSRWPSGRAAPATWPA------ASHRAGGWTGGRRS 66
           RAGRRP +     P GRAAPA  P+      A++ AG     RRS
Sbjct: 275 RAGRRPPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRS 319

>PKNA_MYCBO (P65727) Probable serine/threonine-protein kinase pknA (EC|
           2.7.11.1)
          Length = 431

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = -1

Query: 182 RAGRRPAQQQSRWPSGRAAPATWPA------ASHRAGGWTGGRRS 66
           RAGRRP +     P GRAAPA  P+      A++ AG     RRS
Sbjct: 275 RAGRRPPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRS 319

>K0355_HUMAN (O15063) Protein KIAA0355|
          Length = 1070

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
 Frame = -1

Query: 176 GRRPAQQQSRWPSGRAAPATWP------AASHRAGGWTGGRRSS 63
           GRRP   +  WP    A  TWP            GGW+G +  S
Sbjct: 867 GRRPGNPRGNWPPMDDAHRTWPFPEFFTEGDGLHGGWSGAQGDS 910

>RS3_STRCO (Q9L0D4) 30S ribosomal protein S3|
          Length = 277

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 203 KGKRVGERAGRRPAQQQSRWPSGRAAPATWPAAS 102
           +G R GER GR+P QQ +  P+  A  A  PAA+
Sbjct: 236 RGGRGGERRGRKPQQQSA--PAAEAPKAEAPAAA 267

>SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 (SNAPc subunit|
           4) (snRNA-activating protein complex 190 kDa subunit)
           (SNAPc 190 kDa subunit) (Proximal sequence
           element-binding transcription factor alpha subunit)
           (PSE-binding factor alpha
          Length = 1469

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
 Frame = -1

Query: 287 VVEAAESYGMG-FPFILSSLRTRD-KNCSNK-----GKRVGERAGRRPAQQQSRWPSGRA 129
           ++E  E YG+G +  I S L  R    C +K     GK+ G R  RR A+   RW S   
Sbjct: 464 LIELIEKYGVGHWAKIASELPHRSGSQCLSKWKIMMGKKQGLRRRRRRARHSVRWSS--- 520

Query: 128 APATWPAASHRAGGWTGGRRSS 63
                 ++S  + G +GG  SS
Sbjct: 521 -----TSSSGSSSGSSGGSSSS 537

>LRP2_HUMAN (P98164) Low-density lipoprotein receptor-related protein 2 precursor|
            (Megalin) (Glycoprotein 330) (gp330)
          Length = 4655

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
 Frame = +1

Query: 49   CSSHSEERRPPVQPPALC---DAAGQVAGAALP-----DGHRDC 156
            CS +S+E   P +PP +C   +   Q  G  +P     DGH DC
Sbjct: 1213 CSDNSDEAGCPTRPPGMCHSDEFQCQEDGICIPNFWECDGHPDC 1256

>CXCC1_MOUSE (Q9CWW7) CpG-binding protein (PHD finger and CXXC domain-containing|
           protein 1) (CXXC finger protein 1)
          Length = 660

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = -1

Query: 233 LRTRDKNCSNKGKRVGERAGRRPAQQQSRWPSGRAAPATWPAASHRAGGWTG 78
           +R R K C  +     ERAG  P  +      GR  PA+ P    RAG  TG
Sbjct: 82  IRYRHKKCRERDG--SERAGSEPRDEGG----GRKRPASDPELQRRAGSGTG 127

>SQSTM_RAT (O08623) Sequestosome-1 (Ubiquitin-binding protein p62) (Protein|
           kinase C-zeta-interacting protein) (PKC-zeta-interacting
           protein)
          Length = 439

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 10  REKQRCGEESQQPCSSHSEERRPPVQPPALCDAA-GQVAG 126
           +EK+ C  E + PC   ++E R  V P  +CD   G V G
Sbjct: 98  KEKKECRREHRPPC---AQEARSMVHPNVICDGCNGPVVG 134

>PERE_HUMAN (P11678) Eosinophil peroxidase precursor (EC 1.11.1.7) (EPO)|
           [Contains: Eosinophil peroxidase light chain; Eosinophil
           peroxidase heavy chain]
          Length = 715

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -1

Query: 236 SLRTRDKNCSNKGKRVGERAG--RRPAQQQSRWPSGRAAPATWPAASHRAGGWTGGRRSS 63
           +LR + + CS+K + +  R    RRP    S     R  PA +        GWT  RR +
Sbjct: 133 ALRDQAERCSDKYRTITGRCNNKRRPLLGASNQALARWLPAEYEDGLSLPFGWTPSRRRN 192

Query: 62  LWLL 51
            +LL
Sbjct: 193 GFLL 196

>SLK_MOUSE (O54988) STE20-like serine/threonine-protein kinase (EC 2.7.11.1)|
           (STE20-like kinase) (STE20-related
           serine/threonine-protein kinase) (STE20-related kinase)
           (mSLK) (Serine/threonine-protein kinase 2)
           (STE20-related kinase SMAK) (Etk4)
          Length = 1233

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 13  EKQRCGEESQQPCSSHSEERRPPVQPPALCDAAGQVAGAA 132
           E    G   ++P      E + P Q PA+C+A GQ+   +
Sbjct: 585 EGPEAGGAEEEPPGGERVEDKQPEQQPAVCEAEGQLTSTS 624

>YPC2_ECOLI (P18128) Hypothetical 26.4 kDa protein (ORF 245)|
          Length = 245

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 73  RPPVQPPALCDAAGQVAGAALPDGHRDCCCAGLLPARSPTLLP 201
           RPP + P LC     VAG     G R  C A  +P  +P  LP
Sbjct: 115 RPPCRAPVLCGNPPTVAGRRCRVGIRPPCRAS-VPCGNPPTLP 156

>SPR2F_MOUSE (O70557) Small proline-rich protein 2F|
          Length = 76

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 22  RCGEESQQPCSSHS-EERRPPVQPPALC 102
           +C E   +PC   S +++ PPVQPP  C
Sbjct: 40  KCPEPCPEPCPPPSFQQKCPPVQPPPPC 67

>SPR2E_MOUSE (O70556) Small proline-rich protein 2E|
          Length = 76

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 22  RCGEESQQPCSSHSEERR-PPVQPPALC 102
           +C E   +PC   S +++ PPVQPP  C
Sbjct: 40  KCPEPCPEPCPPPSYQQKCPPVQPPPPC 67

>UBP35_HUMAN (Q9P2H5) Ubiquitin carboxyl-terminal hydrolase 35 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 35)
           (Ubiquitin-specific-processing protease 35)
           (Deubiquitinating enzyme 35)
          Length = 1017

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +1

Query: 4   GTREKQRCGEESQQPCSSHSE-ERRPPVQPPALCDAAGQVAGAALPDGHRDCCCAGLLPA 180
           G REK+   EE ++     +E E     +  +L   AG    AA+P G R C   G    
Sbjct: 703 GEREKEEEVEEEEEKVEKETEKEAEQEKEEDSL--GAGTHPDAAIPSGERTCGSEG---- 756

Query: 181 RSPTLLPLFEQFLS 222
            S ++L L   FLS
Sbjct: 757 -SRSVLDLVNYFLS 769

>TB182_HUMAN (Q9C0C2) 182 kDa tankyrase 1-binding protein|
          Length = 1729

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 28  GEESQQPCSSHS-EERRPPVQPPALCDAAGQVAGAALP 138
           GE +Q+     + +E  PP+ PPA C A G V  A  P
Sbjct: 111 GEATQETGKEEAGKEEPPPLTPPARCAAPGGVRKAPAP 148

>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = -1

Query: 290 IVVEAAESYGMGFPFI-LSSLRTRDKNCSNKGKRV-GERAGRRPAQQQSRWPSGRAAPAT 117
           IVV+       GF F+        DK C ++  ++ G+    + A  +   P GR     
Sbjct: 139 IVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALPKGDAPGGRGGGGR 198

Query: 116 WPAASHRAGGWTGGR 72
                   GGW GGR
Sbjct: 199 GGVGGGAGGGWGGGR 213

>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 200  GKRVGERAGRRPAQQQSRWPSGRAAPATWPAASHRAGGWTGGR 72
            GK  GE+  RR +  +SR   GR+  +++P      GG  GGR
Sbjct: 1007 GKAEGEKGRRRSSPARSRIKQGRS--SSFPGRRRPRGGAHGGR 1047

>RDRP_PAV (Q9J7Z2) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA|
            replicase) (Protein A)
          Length = 973

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 218  KNCSNKGKRVGERAGRRPAQQQSRWPSGRAAPATWPAASH 99
            K  +  G R G   GRRP + ++    GR  P T P  S+
Sbjct: 920  KAAAGSGNRRGPTNGRRPIRDRAPRGGGRPNPGTTPPVSN 959

>FURIN_BOVIN (Q28193) Furin precursor (EC 3.4.21.75) (Paired basic amino acid|
           residue-cleaving enzyme) (PACE) (Dibasic-processing
           enzyme) (Trans Golgi network protease furin)
          Length = 797

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +1

Query: 16  KQRCGEESQQPCSSHSEERRPPVQPPALCDAAGQVAGAALPDGHRDCCCAGL 171
           +Q C  +SQ    SH ++  PP +PP    A      A L   H     AGL
Sbjct: 672 EQTCSRQSQSSRESHQQQPPPPPRPPPAEVATEPRLRADLLPSHLPEVVAGL 723

>ARMX1_HUMAN (Q9P291) Armadillo repeat-containing X-linked protein 1 (Protein|
           ALEX1) (ARM protein lost in epithelial cancers on
           chromosome X 1)
          Length = 453

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -1

Query: 245 ILSSLRTRDKNCSNKGKRVGERAGRRPAQQQSRWPSGRAAPATWPAASHRAGGWTGGR 72
           + ++L+ +    + KG RVG  +G R        P GR        +  RAGG   G+
Sbjct: 111 LFNTLKEQASAKAGKGARVGTISGNRTLAPSLPCPGGRGGGCHPTRSGSRAGGRASGK 168

>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)|
          Length = 1431

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -1

Query: 197 KRVGERAGRRPAQQQSRWPSGRAAP--ATWPAASHRAGGWTGGRRSSL 60
           KR G RAG  P+  Q    SG +AP    W      AGG   G  S +
Sbjct: 347 KRAGSRAGTEPSLPQGSSSSGPSAPPEEIWVLRKPFAGGDRSGSISGM 394


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,093,765
Number of Sequences: 219361
Number of extensions: 912462
Number of successful extensions: 3363
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3361
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)