ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags33c18 |
|---|---|
| Clone Library Name | barley_pub |
>IF2_SYMTH (Q67P86) Translation initiation factor IF-2| Length = 1044 Score = 33.9 bits (76), Expect = 0.22 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +3 Query: 69 ASPSDEATTKPLQPVEVNPISWAAPLASE--PASHADEPVGSADVKPARKRKAEGSEPGE 242 A+P ++A P+ A P A+E PA A++ G+A KPAR G+ Sbjct: 199 AAPPEKAGAAPVPGAVAEQKQAATPAAAEQKPAGKAEQTAGAAQAKPARAEAGTGASSRP 258 Query: 243 ANA 251 A+A Sbjct: 259 ASA 261
>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like| protein) Length = 349 Score = 32.7 bits (73), Expect = 0.48 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Frame = +3 Query: 60 PKNASPSDEATTKPLQPVEVNPIS-WAAPLASEPASHADEPVGSADVKPARKRKAEGSEP 236 PK+ SP T+ P P +P+S +AP+ S PA A P S+ + P+ Sbjct: 205 PKSGSPVSPTTSPPAPPKSTSPVSPSSAPMTSPPAPMA--PKSSSTIPPSSAPMTSPPGS 262 Query: 237 GEANANNHVSDGPETKLEGAQNG 305 +++ VS+ P A G Sbjct: 263 MAPKSSSPVSNSPTVSPSLAPGG 285
>IF2_XANC5 (Q3BRP5) Translation initiation factor IF-2| Length = 904 Score = 31.6 bits (70), Expect = 1.1 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Frame = +3 Query: 63 KNASPSDEATTKPLQPVEVNPISWAAPLASEPASHADEPVGS--ADVKPARKRKAEGSEP 236 K A + A + P + S AAP A P+S + P + A PA + A Sbjct: 174 KAAEEAAAAASAPAPVADAPTPSAAAPAARSPSSPSSAPRAARPAGASPASRPAAPARAD 233 Query: 237 GEANANNHVSDGPETKLEGAQNGD 308 +NA H + G + G ++ D Sbjct: 234 DRSNAAKHKTRGSHVMVAGVEDDD 257
>IF2_LISIN (Q92C29) Translation initiation factor IF-2| Length = 782 Score = 31.6 bits (70), Expect = 1.1 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 16/110 (14%) Frame = +3 Query: 21 SLGPLRQNYVKKRPKNASPSDEATTKPLQPVEVNPISWAAPLASEPASHADEPVGSADVK 200 S GP + N K+ P+ A + +P N A P ++PA+ +++ S + + Sbjct: 72 SKGPNKPNMTNSNEKSNKPNKPAG-QANKPATANKSHGAKPATNKPANTSNQTQSSGNKQ 130 Query: 201 PA----RKRKAEGSEPGEANAN------------NHVSDGPETKLEGAQN 302 PA R + PG N N N + G TK +G N Sbjct: 131 PAGGQKRNNNNNSNRPGGGNPNRPGGNNRPNRGGNFNNKGRNTKKKGKLN 180
>TATB_RHIME (Q92Q24) Sec-independent protein translocase protein tatB homolog| Length = 215 Score = 30.8 bits (68), Expect = 1.8 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 19/96 (19%) Frame = +3 Query: 9 ALPXSLGPLRQ--NYVKKRPKNASPSDE----ATTKPL-QPVEVNPISWAAPLASEPASH 167 AL ++ PLRQ N +K + A+ D AT +PL +PV + + A A+E + Sbjct: 77 ALRDAMNPLRQLGNEIKSDLQKATTPDRPPASATPEPLVEPVNTDAVGETAAKATEKVAA 136 Query: 168 ADEPVGS------ADV------KPARKRKAEGSEPG 239 A S ADV KPA K +A+ +PG Sbjct: 137 AAVSSASRQMDRAADVPKASEPKPAPKPRAQSKKPG 172
>NUP62_HUMAN (P37198) Nuclear pore glycoprotein p62 (62 kDa nucleoporin)| Length = 522 Score = 30.8 bits (68), Expect = 1.8 Identities = 23/68 (33%), Positives = 32/68 (47%) Frame = -1 Query: 337 TAAFQAVVVASPF*APSNLVSGPSDTWLLAFASPGSEPSAFLFRAGFTSADPTGSSA*EA 158 T A + V +S AP+ V GPS T +P + F F G T A P+G + A Sbjct: 122 TNAISSTVTSSQGTAPTGFVFGPSTT----SVAPATTSGGFSFTGGST-AQPSGFNIGSA 176 Query: 157 GSLARGAA 134 G+ A+ A Sbjct: 177 GNSAQPTA 184
>PAM17_NEUCR (Q7SEE1) Presequence translocated-associated motor subunit pam-17,| mitochondrial precursor Length = 267 Score = 30.8 bits (68), Expect = 1.8 Identities = 14/43 (32%), Positives = 26/43 (60%) Frame = +3 Query: 54 KRPKNASPSDEATTKPLQPVEVNPISWAAPLASEPASHADEPV 182 +R ++S S ++T+P E++ + A A++ A+HA EPV Sbjct: 76 RRASSSSSSSSSSTRPRSDAELDANAAEAAAAAQSAAHAGEPV 118
>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2| Length = 916 Score = 30.8 bits (68), Expect = 1.8 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Frame = +3 Query: 48 VKKRPKNASPSDEATTKPLQPVEVNPISWAAPLASEPA--SHADEPVGSADVKPARKRKA 221 V+ K A + A + P PV P +AP A P+ S A P A PA + Sbjct: 183 VEAERKAAEEAAAAASAPA-PVAAAPAPSSAPAARAPSSPSSAPRPARPAGASPASRPAT 241 Query: 222 EGSEPGEANANNHVSDGPETKLEGAQNGD 308 NA H + G + G ++ D Sbjct: 242 PARPDDRNNAAKHKTRGSHVMVAGVEDDD 270
>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2| Length = 902 Score = 30.8 bits (68), Expect = 1.8 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Frame = +3 Query: 48 VKKRPKNASPSDEATTKPLQPVEVNPISWAAPLASEPA--SHADEPVGSADVKPARKRKA 221 V+ K A + A + P PV P +AP A P+ S A P A PA + Sbjct: 169 VEAERKAAEEAAAAASAPA-PVAAAPAPSSAPAARAPSSPSSAPRPARPAGASPASRPAT 227 Query: 222 EGSEPGEANANNHVSDGPETKLEGAQNGD 308 NA H + G + G ++ D Sbjct: 228 PARPDDRNNAAKHKTRGSHVMVAGVEDDD 256
>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)| Length = 5120 Score = 30.8 bits (68), Expect = 1.8 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 4/71 (5%) Frame = +3 Query: 51 KKRPKNASPS----DEATTKPLQPVEVNPISWAAPLASEPASHADEPVGSADVKPARKRK 218 K PK AS S D T KP +P AP+ +P +P D KPA K Sbjct: 602 KSDPKLASQSGAKSDAKTQKPSEP---------APVKDDPKKLQTKPAPKPDTKPAPKGP 652 Query: 219 AEGSEPGEANA 251 G+ P +A Sbjct: 653 QAGTGPRPTSA 663
>FTSK_ECOLI (P46889) DNA translocase ftsK| Length = 1329 Score = 30.4 bits (67), Expect = 2.4 Identities = 19/50 (38%), Positives = 24/50 (48%) Frame = +3 Query: 129 SWAAPLASEPASHADEPVGSADVKPARKRKAEGSEPGEANANNHVSDGPE 278 SWAAP+ EP + PV S DV PA+ A PG ++ PE Sbjct: 332 SWAAPV--EPVTQTP-PVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPE 378
>TUB8_SOLTU (P33191) Induced stolen tip protein TUB8 (Fragment)| Length = 211 Score = 30.4 bits (67), Expect = 2.4 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 7/84 (8%) Frame = +3 Query: 48 VKKRPKNASPSDEATTKPLQPVEVNPISWAAPLASEPASHADEPVGSADVKPARKRKAEG 227 V + P A P+ A ++PV P+ P A+E + A+EPV +A V+ A KAE Sbjct: 90 VAEEPAAAEPT-AAVAAAVEPVAA-PVE--EPAAAEEPAAAEEPVAAAPVEEAAAPKAEP 145 Query: 228 -----SEP--GEANANNHVSDGPE 278 SEP +A + VS+ PE Sbjct: 146 EEAPVSEPEAEKAEEASPVSEEPE 169
>IMMI_ECOLI (P08701) Colicin-Ia immunity protein| Length = 111 Score = 30.4 bits (67), Expect = 2.4 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Frame = +2 Query: 299 EWRCYHHCLKSCSLT-YPVL--YVDDFLVXIFLVHYMREPFFSVTRRRNGLICVYQGT 463 ++R C+ C + YPV Y++D + + FF+ T + GL+ VY GT Sbjct: 30 KYRLLFWCISLCGMVLYPVAKWYIEDTALKFTRPDFWNSGFFADTPGKMGLLAVYTGT 87
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = +3 Query: 30 PLRQNYVKKRPKNASPSDEATTKPLQPVEVNPISWAAPLASEPAS---HADEPVGSADVK 200 P +++ PK P A +P + N + AAP + PAS D PV + D K Sbjct: 1762 PAQKSEEANEPKAEKPDATADAEP----DANQKAEAAPESQPPASEDLEVDPPVAAKDKK 1817 Query: 201 PARKRKAE 224 P + ++++ Sbjct: 1818 PNKSKRSK 1825
>SRC8_CHICK (Q01406) Src substrate protein p85 (p80) (Cortactin)| Length = 563 Score = 30.0 bits (66), Expect = 3.1 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Frame = +3 Query: 57 RPKNASPSDEATTKPLQP-VEVNPISW-AAPLASEPASHADEPVGSADVKPARKRKAEGS 230 + K +P TT+P +P +P+ A +E A SA+ +P K GS Sbjct: 405 KAKKQTPPPSPTTQPAEPKTPSSPVYQDAVSYDAESAYKNSSTTYSAEHEPESGYKTTGS 464 Query: 231 EPGEANANNHVSDGPETKLEGAQNGD 308 + EA + PET E A GD Sbjct: 465 DYQEAVSQREAEYEPETVYEVAGAGD 490
>CHS5_YEAST (Q12114) Chitin biosynthesis protein CHS5 (Protein CAL3)| Length = 671 Score = 30.0 bits (66), Expect = 3.1 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 5/74 (6%) Frame = +3 Query: 63 KNASPSDEATT---KPLQPVEVNPISWAAPLASEPASHADEPVGSAD--VKPARKRKAEG 227 +N P+D+A +P +E ++ + A+EPA ++EPV ++ VK + K + Sbjct: 443 ENNEPADDAAMEFGRPEAEIETPEVNESIEDANEPAEDSNEPVEDSNKPVKDSNKPVEDS 502 Query: 228 SEPGEANANNHVSD 269 ++P E ++N V D Sbjct: 503 NKPVE-DSNKPVED 515
>VGFR3_MOUSE (P35917) Vascular endothelial growth factor receptor 3 precursor (EC| 2.7.10.1) (VEGFR-3) (Tyrosine-protein kinase receptor FLT4) Length = 1363 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = +3 Query: 156 PASHADEPVGSADVKPARKRKAEGSEPGEANANNHVSDGPETKLEG 293 P H D P G D + R+R +G++ G+ NN + + EG Sbjct: 1302 PGQHMDIPRGHPDPQGRRRRPTQGAQGGKVFYNNEYGEVSQPCTEG 1347
>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1404 Score = 29.6 bits (65), Expect = 4.1 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 2/81 (2%) Frame = +3 Query: 54 KRPKNASPSDEATTKPLQPVEVNPISWAAPLASEPASHADEPVGSADVKPA--RKRKAEG 227 K P +P A T P +P P EPA EP + +PA +K Sbjct: 433 KEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAP 492 Query: 228 SEPGEANANNHVSDGPETKLE 290 + P E P T E Sbjct: 493 TTPKEPAPTTPKEPAPTTTKE 513
>FGD5_HUMAN (Q6ZNL6) FYVE, RhoGEF and PH domain-containing protein 5 (Zinc finger| FYVE domain-containing protein 23) Length = 1462 Score = 29.6 bits (65), Expect = 4.1 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Frame = +3 Query: 63 KNASPSDEATTKPLQPVEVNPISWAAP---LASEPASHADEPVGSADVKPARKRKAEG 227 K S +A + +P +V PIS AAP L S+ + E SA P+ K EG Sbjct: 832 KQQSADQDAESAYTEPYKVCPISSAAPKEDLTSDEEQRSSEEEDSASRDPSVTHKVEG 889
>FTSK_SHIFL (Q83S00) DNA translocase ftsK| Length = 1342 Score = 29.3 bits (64), Expect = 5.3 Identities = 18/50 (36%), Positives = 24/50 (48%) Frame = +3 Query: 129 SWAAPLASEPASHADEPVGSADVKPARKRKAEGSEPGEANANNHVSDGPE 278 SWAAP+ EP + PV S DV P++ A PG ++ PE Sbjct: 332 SWAAPV--EPVTQTP-PVASVDVPPSQPTVAWQPVPGPQTGEPVIAPAPE 378
>FTSK_ECO57 (Q8X5H9) DNA translocase ftsK| Length = 1342 Score = 29.3 bits (64), Expect = 5.3 Identities = 18/50 (36%), Positives = 24/50 (48%) Frame = +3 Query: 129 SWAAPLASEPASHADEPVGSADVKPARKRKAEGSEPGEANANNHVSDGPE 278 SWAAP+ EP + PV S DV P++ A PG ++ PE Sbjct: 332 SWAAPV--EPVTQTP-PVASVDVPPSQPTVAWQPVPGPQTGEPVIAPAPE 378
>ADDA_RAT (Q63028) Alpha-adducin (Erythrocyte adducin alpha subunit)| Length = 735 Score = 29.3 bits (64), Expect = 5.3 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 8/59 (13%) Frame = +3 Query: 66 NASPSDEATTKPLQPVEVNPISWAAPLASEPASHADE---PV-----GSADVKPARKRK 218 +ASP TT+PL + P S +AP A E AS A E P+ GS P++K+K Sbjct: 663 HASPD---TTQPLAEADPEPASASAPGAEEVASPATEEGSPMDPGSDGSPGKSPSKKKK 718
>OGFR_HUMAN (Q9NZT2) Opioid growth factor receptor (OGFr) (Zeta-type opioid| receptor) (7-60 protein) Length = 677 Score = 29.3 bits (64), Expect = 5.3 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 6/82 (7%) Frame = +3 Query: 15 PXSLGPLRQNYVKKR-----PKNASPS-DEATTKPLQPVEVNPISWAAPLASEPASHADE 176 P GP R + P+ A P+ DE P + P A P EPA E Sbjct: 584 PSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRP---AGPAGDEPAESPSE 640 Query: 177 PVGSADVKPARKRKAEGSEPGE 242 G + P R A+ E E Sbjct: 641 TPGPSPAGPTRDEPAKAGEAAE 662
>GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)| Length = 932 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +3 Query: 147 ASEPASHADEPVGSADVKPARKRKAEGSEPGEANA 251 AS PAS +P+ S+ A + KAE PGE +A Sbjct: 467 ASLPASEKTDPLASSKAGSASQGKAETVSPGEVDA 501
>SUOX_MACFA (Q60HD0) Sulfite oxidase, mitochondrial precursor (EC 1.8.3.1)| Length = 488 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/54 (27%), Positives = 23/54 (42%) Frame = +3 Query: 114 EVNPISWAAPLASEPASHADEPVGSADVKPARKRKAEGSEPGEANANNHVSDGP 275 E+NP AP +AD+PV +K +R P E N+++ P Sbjct: 102 ELNPEDKVAPTVETSDPYADDPVRHPALKVNSQRPFNAEPPPELLTENYITPNP 155
>SUOX_HUMAN (P51687) Sulfite oxidase, mitochondrial precursor (EC 1.8.3.1)| Length = 488 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/54 (27%), Positives = 23/54 (42%) Frame = +3 Query: 114 EVNPISWAAPLASEPASHADEPVGSADVKPARKRKAEGSEPGEANANNHVSDGP 275 E+NP AP +AD+PV +K +R P E N+++ P Sbjct: 102 ELNPEDKVAPTVETSDPYADDPVRHPALKVNSQRPFNAEPPPELLTENYITPNP 155
>NGK7_SCHPO (Q9USL4) Putative nucleoporin C18B5.07c| Length = 565 Score = 29.3 bits (64), Expect = 5.3 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Frame = +3 Query: 120 NPISWAAPLASEPASHADEPVG---SADVKPARKRKAEGSEPG--EANANNHVSDGPETK 284 NP S+AAP +S P S VG S + K + E E G E +N+ + G K Sbjct: 389 NPFSFAAPKSSFPTSSTPASVGAEKSEETSNGNKSEQEEKENGNDETRSNDSLVSG---K 445 Query: 285 LEGAQNGD 308 +G +N D Sbjct: 446 GKGEENED 453
>KKQ8_YEAST (P36004) Probable serine/threonine-protein kinase YKL168C (EC| 2.7.11.1) Length = 734 Score = 28.9 bits (63), Expect = 6.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -3 Query: 158 WFTRKRSSPGYGVNFHWLKRLSCCFI 81 W RKR S G ++ W+K +CC I Sbjct: 705 WEPRKRISVGKLLDMQWMKSTNCCLI 730
>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)| Length = 1601 Score = 28.9 bits (63), Expect = 6.9 Identities = 23/83 (27%), Positives = 33/83 (39%) Frame = +3 Query: 60 PKNASPSDEATTKPLQPVEVNPISWAAPLASEPASHADEPVGSADVKPARKRKAEGSEPG 239 PK + P++ A PL+PV + P S P +GS + + +G G Sbjct: 1224 PKTSPPANAAKVTPLKPV-LTPTQVDKKTPS-PEKRTAAQMGSHSPTASENKSPKGGPAG 1281 Query: 240 EANANNHVSDGPETKLEGAQNGD 308 AN+ GAQNGD Sbjct: 1282 VANSTG-----------GAQNGD 1293
>HRDB_STRCO (P18183) RNA polymerase principal sigma factor hrdB| Length = 511 Score = 28.9 bits (63), Expect = 6.9 Identities = 22/79 (27%), Positives = 32/79 (40%) Frame = +3 Query: 72 SPSDEATTKPLQPVEVNPISWAAPLASEPASHADEPVGSADVKPARKRKAEGSEPGEANA 251 SP+ TK + V AP A PA+ A EP + PA+K A+ + +A A Sbjct: 87 SPAKRTATKAVAAKPVTSRKATAPAA--PAAPATEPAAVEEEAPAKKAAAKKTTAKKATA 144 Query: 252 NNHVSDGPETKLEGAQNGD 308 + K A+ D Sbjct: 145 KKTTAKKAAAKKTTAKKED 163
>SMA6_CAEEL (Q09488) Serine/threonine-protein kinase sma-6 precursor (EC| 2.7.11.30) Length = 636 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +2 Query: 293 CSEWRCYHHCLKSCSLTYPVLYVDDFLVXIFLVHYMRE 406 C+ WR HH KS Y Y + L+ VH+ +E Sbjct: 128 CNSWRAAHHSPKSIGCCYEGNYCNKNLIPPAYVHHHKE 165
>FTSK_ECOL6 (Q8FJC7) DNA translocase ftsK| Length = 1347 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = +3 Query: 129 SWAAPLASEPASHADEPVGSADVKPARKRKAEGSEPGEANANNHVSDGPE 278 SWAAP+ EP + PV S DV P + A PG ++ PE Sbjct: 332 SWAAPV--EPVTQTP-PVASVDVPPTQPTVAWQPVPGPQTGEPVIAPAPE 378
>CCDC8_RAT (P62521) Probable Coiled-coil domain-containing protein 8| Length = 643 Score = 28.9 bits (63), Expect = 6.9 Identities = 25/78 (32%), Positives = 31/78 (39%) Frame = +3 Query: 69 ASPSDEATTKPLQPVEVNPISWAAPLASEPASHADEPVGSADVKPARKRKAEGSEPGEAN 248 A+P EAT P NP + AA AS A A P A P + +A + EA Sbjct: 328 ANPRAEATANPRAEAAANPRAEAA--ASPRAEAAANPRAEAAANP--RAEATANPRAEAA 383 Query: 249 ANNHVSDGPETKLEGAQN 302 AN + E A N Sbjct: 384 ANPRAEATANPRAEAAVN 401
>LEU3_LEPIN (P24015) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 358 Score = 28.9 bits (63), Expect = 6.9 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 3/93 (3%) Frame = -1 Query: 436 ITASRYRKKGLPHIMDKEYXDEEIIDVEHWVRQTAAFQAVVVASPF*AP--SNLVSGP-S 266 +T S + K+ + + KE+ D + + H AA Q +V F N+ S Sbjct: 196 LTTSVFWKEVVIELHKKEFSD---VQLNHLYVDNAAMQLIVNPKQFDVVLCENMFGDILS 252 Query: 265 DTWLLAFASPGSEPSAFLFRAGFTSADPTGSSA 167 D + S G PSA L +GF +P+G SA Sbjct: 253 DEASIITGSIGMLPSASLSESGFGLYEPSGGSA 285
>LEU3_LEPIC (Q72RH7) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 358 Score = 28.9 bits (63), Expect = 6.9 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 3/93 (3%) Frame = -1 Query: 436 ITASRYRKKGLPHIMDKEYXDEEIIDVEHWVRQTAAFQAVVVASPF*AP--SNLVSGP-S 266 +T S + K+ + + KE+ D + + H AA Q +V F N+ S Sbjct: 196 LTTSVFWKEVVIELHKKEFSD---VQLNHLYVDNAAMQLIVNPKQFDVVLCENMFGDILS 252 Query: 265 DTWLLAFASPGSEPSAFLFRAGFTSADPTGSSA 167 D + S G PSA L +GF +P+G SA Sbjct: 253 DEASIITGSIGMLPSASLSESGFGLYEPSGGSA 285
>IF2_PSESM (Q87WQ5) Translation initiation factor IF-2| Length = 841 Score = 28.9 bits (63), Expect = 6.9 Identities = 20/74 (27%), Positives = 34/74 (45%) Frame = +3 Query: 51 KKRPKNASPSDEATTKPLQPVEVNPISWAAPLASEPASHADEPVGSADVKPARKRKAEGS 230 K+R + + + A +P P++ A P+ PA+ A P +A ARKR E Sbjct: 127 KRRAEEDARNQPAAGQPAS-APAQPVAAAEPVREAPAAAAPAPASAAPSADARKRD-EQR 184 Query: 231 EPGEANANNHVSDG 272 P + A++ + G Sbjct: 185 RPDKPRADDRNARG 198
>VGFR3_RAT (Q91ZT1) Vascular endothelial growth factor receptor 3 precursor (EC| 2.7.10.1) (VEGFR-3) (Tyrosine-protein kinase receptor FLT4) Length = 1363 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = +3 Query: 153 EPASHADEPVGSADVKPARKRKAEGSEPGEANANNHVSDGPETKLEG 293 +P H D G D++ R+R +G++ G+ NN + + EG Sbjct: 1301 DPGQHMDISRGHPDLQGRRRRPTQGAQGGKVFYNNEYGEVSQPCTEG 1347
>DNAA_BURPS (Q63YW5) Chromosomal replication initiator protein dnaA| Length = 533 Score = 28.5 bits (62), Expect = 9.1 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Frame = +3 Query: 60 PKNASPSDEATTKPLQPVEVNPISWAAPLASEPAS------HADEPVGSADVKPARKRKA 221 PK S T PL P P + AP+A PAS HA P G A A Sbjct: 81 PKAGQRSPAGAT-PLAPRAPLPSANPAPVAPGPASAPAVDAHAPAPAGMNAATAAAVAAA 139 Query: 222 EGSEPGEANA 251 + ++ +ANA Sbjct: 140 QAAQAAQANA 149
>NASP_RABIT (P27123) Nuclear autoantigenic sperm protein (NASP)| Length = 680 Score = 28.5 bits (62), Expect = 9.1 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 8/92 (8%) Frame = +3 Query: 54 KRPKNASPSDEATTKPLQPVEVNPISWAAPLASEPASHADEPVGSADVKPARKRKAEGSE 233 ++P AS TT + + A + +EP +PV +P + G+E Sbjct: 170 EKPTEASEEQPGTT-------LGKDNTAVEVEAEPVDATAKPVDVGGHEPKEQMATSGNE 222 Query: 234 PGEANANNH--------VSDGPETKLEGAQNG 305 PG+A N V + P E A+ G Sbjct: 223 PGKAVLNQQLVGQDVPPVEESPMVTTEAAEVG 254
>ARR4_ARATH (O82798) Two-component response regulator ARR4 (Response regulator| 1) Length = 259 Score = 28.5 bits (62), Expect = 9.1 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Frame = +3 Query: 3 NFALPXSLGPLRQNYVKKRPKNASPSDEATTKPLQPVEVNPISWAAPLASEPASHADEPV 182 N +LP PL + P S ++ PL PVE+ S PL+S P D+ V Sbjct: 183 NSSLPPPSPPLTISPESSPPLTVSTESSDSSPPLSPVEIFSTS---PLSS-PIDDEDDDV 238 Query: 183 --GSADVKPARKRK 218 S++ P R++K Sbjct: 239 LTSSSEESPIRRQK 252
>NUP62_RAT (P17955) Nuclear pore glycoprotein p62 (62 kDa nucleoporin)| Length = 525 Score = 28.5 bits (62), Expect = 9.1 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Frame = -1 Query: 289 SNLVSGPSDTWLLAFASPGSEPSAFLFRAGFTSADPTGSS--A*EAGSLARGAAQDMGLT 116 +N +SG S + S G+ P+ F+F + TSA TG++ + +GS ++ A + Sbjct: 123 TNAISGASTS------SQGTAPTGFVFGSSTTSAPSTGTTGFSFTSGSASQPGASGFNIG 176 Query: 115 STG 107 S G Sbjct: 177 SVG 179
>TONB_SALTY (P25945) Protein tonB| Length = 242 Score = 28.5 bits (62), Expect = 9.1 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = +3 Query: 51 KKRPKNASPSDEATTKPLQPVEVNPISWAAPLASEPASHADEPVGSADVKPARKRKAEGS 230 K +PK P + KP++ VE P P A PAS + SA V+P + S Sbjct: 93 KPKPK---PKPKPKPKPVKKVEEQPKREVKPAAPRPASPFE---NSAPVRPTSSTASATS 146 Query: 231 EP 236 +P Sbjct: 147 KP 148
>MYPC3_CHICK (Q90688) Myosin-binding protein C, cardiac-type (Cardiac MyBP-C)| (C-protein, cardiac muscle isoform) Length = 1271 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +3 Query: 60 PKNASPSDEATTKPLQPVEVNPISWAAPLASEPASHADEPVGSADVKP 203 P ASP+ A+ P PVE N P ++P D P+G +P Sbjct: 104 PAEASPAPAASELPAPPVESNQNPEVPPAETQPEEPVD-PIGLFVTRP 150
>CO6A3_HUMAN (P12111) Collagen alpha-3(VI) chain precursor| Length = 3176 Score = 28.5 bits (62), Expect = 9.1 Identities = 23/89 (25%), Positives = 35/89 (39%) Frame = +3 Query: 21 SLGPLRQNYVKKRPKNASPSDEATTKPLQPVEVNPISWAAPLASEPASHADEPVGSADVK 200 S+ P +P A P T PV V P + A P+A++PA A P +A Sbjct: 2904 SVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPVAAKPA--AVRPPAAAAKP 2961 Query: 201 PARKRKAEGSEPGEANANNHVSDGPETKL 287 A K + + + A + P K+ Sbjct: 2962 VATKPEVPRPQAAKPAATKPATTKPVVKM 2990 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,541,571 Number of Sequences: 219361 Number of extensions: 1334384 Number of successful extensions: 4280 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 4034 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4252 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
