>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 30       cctctgcggcagaactatgtcaaaaagcgccctaaga 66
                |||||||| ||| ||||||||||||||||||||||||
Sbjct: 18861010 cctctgcgacaggactatgtcaaaaagcgccctaaga 18860974



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                    
Query: 255      aaccatgtgtctgatgggccggaaaccaagttagagggtgctcagaatggag 306
                |||||||| |||||||  ||  ||||||||||||||| | |||| |||||||
Sbjct: 18859666 aaccatgtttctgatgaaccaaaaaccaagttagaggatactcaaaatggag 18859615

>dbj|AK107282.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-B01, full
            insert sequence
          Length = 1312

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                 
Query: 30   cctctgcggcagaactatgtcaaaaagcgccctaaga 66
            |||||||| ||| ||||||||||||||||||||||||
Sbjct: 1124 cctctgcgacaggactatgtcaaaaagcgccctaaga 1160

>dbj|AK101317.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034D09, full
            insert sequence
          Length = 1751

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                 
Query: 30   cctctgcggcagaactatgtcaaaaagcgccctaaga 66
            |||||||| ||| ||||||||||||||||||||||||
Sbjct: 1046 cctctgcgacaggactatgtcaaaaagcgccctaaga 1082



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 255  aaccatgtgtctgatgggccggaaaccaagttagagggtgctcagaatggag 306
            |||||||| |||||||  ||  ||||||||||||||| | |||| |||||||
Sbjct: 1295 aaccatgtttctgatgaaccaaaaaccaagttagaggatactcaaaatggag 1346

>gb|AY029560.1| Zea mays putative methyl-binding domain protein MBD108 mRNA,
           complete cds
          Length = 1431

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 28  gacctctgcggcagaactatgtcaaaaag 56
           ||||| |||||||| ||||||||||||||
Sbjct: 748 gacctttgcggcaggactatgtcaaaaag 776

>gb|AC159994.7| Mus musculus chromosome 7, clone RP23-368F23, complete sequence
          Length = 181238

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 326   aaaagctgcagtctgacgtacccag 350
             |||||||||||||||||| ||||||
Sbjct: 66167 aaaagctgcagtctgacgcacccag 66143

>gb|AC012391.10| Homo sapiens chromosome 10 clone RP11-162A23, complete sequence
          Length = 181948

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 326   aaaagctgcagtctgacgtacccag 350
             |||||||||||||||||| ||||||
Sbjct: 59485 aaaagctgcagtctgacgcacccag 59461

>gb|L21974.1|ACSCSRC Avian sarcoma virus proviral c-src gene, complete cds, and env gene,
            untranslated region
          Length = 5188

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 1677 tgaaccagcttctcatgccg 1658

>gb|AC147241.2| Mus musculus BAC clone RP23-417C21 from chromosome 12, complete sequence
          Length = 199956

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    ggaaagcagaaggctctgag 233
              ||||||||||||||||||||
Sbjct: 110471 ggaaagcagaaggctctgag 110452

>gb|AC124733.4| Mus musculus BAC clone RP23-306C18 from 12, complete sequence
          Length = 206837

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 214    ggaaagcagaaggctctgag 233
              ||||||||||||||||||||
Sbjct: 175282 ggaaagcagaaggctctgag 175301

>ref|XM_774763.1| Giardia lamblia ATCC 50803 hypothetical protein
            (GLP_170_138692_134292) partial mRNA
          Length = 4401

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  tggatcggcagatgtgaagc 201
            ||||||||||||||||||||
Sbjct: 2369 tggatcggcagatgtgaagc 2350

>emb|BX255925.17| Human DNA sequence from clone RP13-122B23 on chromosome 9, complete
             sequence
          Length = 100719

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   gcagaaggctctgagccagg 238
             ||||||||||||||||||||
Sbjct: 23172 gcagaaggctctgagccagg 23191

>emb|AL132868.24|HSA262P20 Human DNA sequence from clone RP11-262P20 on chromosome 4, complete
              sequence
          Length = 193444

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    ctcttcaaccagtggaagtt 119
              ||||||||||||||||||||
Sbjct: 143085 ctcttcaaccagtggaagtt 143104

>emb|X52822.1|MAVSCR M.auratus H-19 proviral sequence (LTR,v-3scr1,LTR)
          Length = 3775

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 2212 tgaaccagcttctcatgccg 2193

>emb|X84074.1|RSVPP62V8 Rous sarcoma virus pp62v-src gene
          Length = 1638

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 1031 tgaaccagcttctcatgccg 1012

>emb|X84073.1|RSVSRCHM Rous sarcoma virus srcHM gene
          Length = 1641

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 1031 tgaaccagcttctcatgccg 1012

>emb|X68524.1|RSVSEQ Rous Sarcoma Virus (duck adapted) sequence of gag, pol, env and src
            genes
          Length = 9312

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 8099 tgaaccagcttctcatgccg 8080

>emb|X51863.1|ASVPR225T Avian Sarcoma Virus PR2257T
          Length = 4503

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 1677 tgaaccagcttctcatgccg 1658

>emb|X51861.1|RSVPRSRC Duck adapted Rous sarcoma virus (Pr-RSV-C) src gene and 3'-LTR
          Length = 2545

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 1252 tgaaccagcttctcatgccg 1233

>emb|X15345.1|RERSVH19 Hamster H-19 proviral DNA (LTR- v-src -LTR)
          Length = 3123

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 1801 tgaaccagcttctcatgccg 1782

>emb|V01197.1|RERSV6 Rous sarcoma virus genome, strain Prague C (Pr-C)
          Length = 9312

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 8099 tgaaccagcttctcatgccg 8080

>emb|AL627271.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 7/20
          Length = 233050

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 423    cgcgacgccgtaatggcctt 442
              ||||||||||||||||||||
Sbjct: 158702 cgcgacgccgtaatggcctt 158683

>dbj|AK128153.1| Homo sapiens cDNA FLJ46276 fis, clone TESTI4029676
          Length = 2907

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 gcagaaggctctgagccagg 238
           ||||||||||||||||||||
Sbjct: 22  gcagaaggctctgagccagg 3

>gb|J02342.1|ALRCG Rous sarcoma virus - Prague C, complete genome
          Length = 9625

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 8332 tgaaccagcttctcatgccg 8313

>gb|AF033808.1|AF033808 Rous sarcoma virus, complete genome
          Length = 9392

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 8099 tgaaccagcttctcatgccg 8080

>emb|V00402.1|GGCSRC Gallus gallus gene c-src producing protein pp60-c-src. This gene is
            homologous to the rous sarcoma virus gene v-src
          Length = 1759

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 1082 tgaaccagcttctcatgccg 1063

>gb|AC105448.5| Homo sapiens BAC clone RP11-1197E19 from 4, complete sequence
          Length = 135594

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    ctcttcaaccagtggaagtt 119
              ||||||||||||||||||||
Sbjct: 117810 ctcttcaaccagtggaagtt 117791

>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 423     cgcgacgccgtaatggcctt 442
               ||||||||||||||||||||
Sbjct: 1617289 cgcgacgccgtaatggcctt 1617270

>emb|V01169.1|REASV5 Avian sarcoma virus src gene and part of the env gene
          Length = 3107

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 2093 tgaaccagcttctcatgccg 2074

>emb|X14718.1|RERSVSRC Rous sarcome virus Pra src gene (pp60)
          Length = 1653

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 1046 tgaaccagcttctcatgccg 1027

>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 423     cgcgacgccgtaatggcctt 442
               ||||||||||||||||||||
Sbjct: 1249429 cgcgacgccgtaatggcctt 1249448

>gb|L29199.1|ALRDA2 Rous sarcoma virus (Schmidt-Ruppin A) env-src-3'LTR
          Length = 3256

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 2093 tgaaccagcttctcatgccg 2074

>emb|AL161851.4|CNS01RHM Human chromosome 14 DNA sequence BAC R-1078I14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 187732

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   tcttcaaccagtggaagtta 120
             ||||||||||||||||||||
Sbjct: 63347 tcttcaaccagtggaagtta 63366

>gb|AF052428.1| Rous sarcoma virus strain Schmidt-Ruppin B, complete genome
          Length = 9396

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 8297 tgaaccagcttctcatgccg 8278

>emb|Z68276.1|HSL190B4 Human DNA sequence from clone LA04NC01-190B4 on chromosome 4,
            complete sequence
          Length = 29748

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 100  ctcttcaaccagtggaagtt 119
            ||||||||||||||||||||
Sbjct: 7898 ctcttcaaccagtggaagtt 7917

>gb|M21526.1|ALRSRCAC Rous sarcoma virus defective mutant PR2257 src gene encoding p66-src
            protein, complete cds
          Length = 4413

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 1677 tgaaccagcttctcatgccg 1658

>gb|M84475.1|ALRPP60A Rous sarcoma virus phosphoprotein p60 (src) gene, complete cds and
            reverse transcriptase (pol) gene, 3' end
          Length = 2241

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 1250 tgaaccagcttctcatgccg 1231

>gb|M11753.1|ALRGSRCA Rous sarcoma virus src gene, complete cds
          Length = 1629

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tgaaccagcttctcatgccg 171
            ||||||||||||||||||||
Sbjct: 1001 tgaaccagcttctcatgccg 982


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,379,172
Number of Sequences: 3902068
Number of extensions: 3379172
Number of successful extensions: 61645
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61551
Number of HSP's gapped (non-prelim): 94
length of query: 472
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 450
effective length of database: 17,147,199,772
effective search space: 7716239897400
effective search space used: 7716239897400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)