ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags33c14 |
|---|---|
| Clone Library Name | barley_pub |
>SRPR_DROME (Q9U5L1) Signal recognition particle receptor alpha subunit homolog| (SR-alpha) (Docking protein alpha) (DP-alpha) (GTP-binding protein) Length = 614 Score = 52.8 bits (125), Expect = 9e-07 Identities = 42/130 (32%), Positives = 58/130 (44%), Gaps = 9/130 (6%) Frame = +2 Query: 272 TEPKKAVKQMRVWDDKPPKNEKLDFTDPADERGDEV------IEKVLTNQGXXXXXXXXX 433 ++P+KA K+ RVWD ++ D + + D+V E V T QG Sbjct: 210 SKPEKAGKKPRVWD-LGGNSKDAALLDRSRDSPDDVQYQNINSELVGTMQGVIRDLDVES 268 Query: 434 XXXXXXXXXXXXXXNAEAGQKKKG---WFSSMFKSIAGNNVLEKSDLQPALKALKDRLMT 604 E Q KKG S FK I G + +DLQPAL+ ++D L++ Sbjct: 269 EDEADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLIS 328 Query: 605 KNVAEEIAEK 634 KNVA EIA K Sbjct: 329 KNVASEIAAK 338
>SRPR_YEAST (P32916) Signal recognition particle receptor alpha subunit homolog| (SR-alpha) (Docking protein alpha) (DP-alpha) Length = 621 Score = 38.5 bits (88), Expect = 0.017 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 4/50 (8%) Frame = +2 Query: 494 KKKGWFSSMF----KSIAGNNVLEKSDLQPALKALKDRLMTKNVAEEIAE 631 K G+ S+ F K + GN + +SDL+ L+ L +L+TKNVA E A+ Sbjct: 284 KNSGYVSTAFGFLQKHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAAD 333
>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 33.9 bits (76), Expect = 0.42 Identities = 34/127 (26%), Positives = 42/127 (33%), Gaps = 9/127 (7%) Frame = -1 Query: 449 RYRCSDPRPYPSCCPPGW*APSLSPHPLSRQ-------LGP*SPASRSWAVCXXXXXXXX 291 R RC PRP+P AP+ +PH + L P +P SRS Sbjct: 1211 RARCGCPRPHPHRPRASHRAPAAAPHHHRHRRAAGGWDLPPPAPTSRS------------ 1258 Query: 290 XXXXXXXXXXXSHQSSCRRHRPSFLLSSYVRYLHRRPH--RWGPRSPXXXXXXXXXQPGR 117 SSC R P+ L+ R+ R PH WGP P Sbjct: 1259 ----------LEDLSSCPRAAPTRRLTGPSRHARRCPHAAHWGPPLPTASHRRHRGGDLG 1308 Query: 116 ENRSRAH 96 R AH Sbjct: 1309 TRRGSAH 1315
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 32.3 bits (72), Expect = 1.2 Identities = 33/127 (25%), Positives = 41/127 (32%), Gaps = 9/127 (7%) Frame = -1 Query: 449 RYRCSDPRPYPSCCPPGW*APSLSPHPLSRQLG-------P*SPASRSWAVCXXXXXXXX 291 R RC PRP+P AP+ +PH + P +P SRS Sbjct: 1211 RARCGCPRPHPHRPRASHRAPAAAPHHHRHRRAAGGWDFPPPAPTSRS------------ 1258 Query: 290 XXXXXXXXXXXSHQSSCRRHRPSFLLSSYVRYLHRRPH--RWGPRSPXXXXXXXXXQPGR 117 SSC R P+ L+ R+ R PH WGP P Sbjct: 1259 ----------LEDLSSCPRAAPTRRLTGPSRHARRCPHAAHWGPPLPTASHRRHRGGDLG 1308 Query: 116 ENRSRAH 96 R AH Sbjct: 1309 TRRGSAH 1315
>CLF1_ASPFU (Q4WT84) Pre-mRNA-splicing factor clf1| Length = 676 Score = 31.6 bits (70), Expect = 2.1 Identities = 14/48 (29%), Positives = 29/48 (60%) Frame = +2 Query: 251 DVKKVAKTEPKKAVKQMRVWDDKPPKNEKLDFTDPADERGDEVIEKVL 394 D+KK+ + P++ K+ ++ DD+ E +D+ PAD++ + K+L Sbjct: 616 DIKKIEEQMPRRVKKRRKLDDDR--YEEYMDYVFPADDQAAASLTKIL 661
>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel| [Contains: Glutamic acid-rich protein (GARP); Cyclic-nucleotide-gated cation channel 4 (CNG channel 4) (CNG-4) (Cyclic nucleotide-gated cation channel modulatory subunit)] Length = 1394 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = +1 Query: 208 EDRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQE 330 E +KE R +E+ EEGG+ +EGR+ +E GR +E Sbjct: 397 EGEKKEEEGREKEE--EEGGEKEDEEGREKEEEEGRGKEEE 435 Score = 30.0 bits (66), Expect = 6.0 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +1 Query: 208 EDRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQERE 336 E +EGR + +E EGG+ +EGR +E GR+ ++ E Sbjct: 423 EKEEEEGRGKEEE----EGGEKEEEEGRGKEEVEGREEEEDEE 461
>RHO_MICLU (P52154) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 690 Score = 30.0 bits (66), Expect = 6.0 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +1 Query: 211 DRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQERE 336 +RR GR R +D ++G QDR +G Q ++G +RE Sbjct: 155 ERRSRGRRRAGDDDAQQG-QDRRSDGAQGEDGADADRRGDRE 195
>NFL_XENLA (P35616) Neurofilament triplet L protein (Neurofilament light| polypeptide) (NF-L) Length = 543 Score = 29.6 bits (65), Expect = 7.9 Identities = 15/40 (37%), Positives = 25/40 (62%) Frame = +1 Query: 208 EDRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQ 327 E+ +EG ++E+ EEGGQ++ +EG +EG G A+ Sbjct: 481 EEEGEEGEEAKEEEAEEEGGQEKEEEG---EEGEGEAEAE 517
>CLF1_PARBR (Q5K654) Pre-mRNA-splicing factor CLF1| Length = 677 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/48 (29%), Positives = 26/48 (54%) Frame = +2 Query: 251 DVKKVAKTEPKKAVKQMRVWDDKPPKNEKLDFTDPADERGDEVIEKVL 394 D+ K+ + P K K+ ++ DD+ E LD+ PAD+ + ++L Sbjct: 614 DIAKIERQMPSKVKKRRKLDDDR--YEEYLDYMFPADDESSAKLSQIL 659
>ERME_SACER (P07287) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)| (Macrolide-lincosamide-streptogramin B resistance protein) (Erythromycin resistance protein) (NMT) Length = 370 Score = 29.6 bits (65), Expect = 7.9 Identities = 18/49 (36%), Positives = 21/49 (42%) Frame = +1 Query: 211 DRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQEREAGLHGPS 357 DRR GR R G DR GR D+G + Q + G GPS Sbjct: 306 DRRTGGRDHRDRQ--ASGHGDRRSSGRNRDDGRTGEREQGDQGGRRGPS 352 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,057,359 Number of Sequences: 219361 Number of extensions: 1072206 Number of successful extensions: 3608 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3428 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3599 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
