| Clone Name | bags33c11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF479044.1| Triticum aestivum F1-ATPase mRNA, partial cds Length = 555 Score = 507 bits (256), Expect = e-140 Identities = 325/348 (93%) Strand = Plus / Plus Query: 2 aagctctgtatggtggcaccggcaactacgctagtgcgttgttccttgcagcagccaacg 61 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 194 aagctctgtatggtggcacgggcaactacgctagtgcgttgttccttgcagcagccaact 253 Query: 62 caaattcgttggaaaaagttgaatccgagattggcgatgttgtaggggcagtcaagaaga 121 ||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| Sbjct: 254 caaattcgttggaaaaagttgaatctgagattctcgatgttgtaggggcagccaagaaga 313 Query: 122 gccctatgttttctcaattcataaaggactcatcagtgccaaaagcaaccagggtgaagg 181 |||||||||||||||||||||| |||||| |||||||||| |||| |||||||||||||| Sbjct: 314 gccctatgttttctcaattcatgaaggacacatcagtgcctaaagaaaccagggtgaagg 373 Query: 182 ctgtaacagaaatattcgctgaagccaagttttctgacatcacacagaatttcttgtctg 241 || |||| ||||||||| |||||||| |||| ||||||||||| |||| |||||||||| Sbjct: 374 ctataactgaaatattctctgaagccgggtttactgacatcacaaagaaattcttgtctg 433 Query: 242 tactggcgtccaatggaagactgaaatttgttgaacgcattgcggagagatttgttgatt 301 |||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct: 434 cactggcatccaatggaagactgaaatatgttgaacgcattgctgagagatttgttgatt 493 Query: 302 tgaccatggcacacaggggggaggtgaaagttgttgtcaggactgttg 349 ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 494 tgaccatggcacataggggggaggtgaaagttgttgtcaggactgttg 541
>dbj|AK071267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086I22, full insert sequence Length = 1044 Score = 454 bits (229), Expect = e-124 Identities = 490/577 (84%) Strand = Plus / Plus Query: 1 gaagctctgtatggtggcaccggcaactacgctagtgcgttgttccttgcagcagccaac 60 ||||||||||||||||||||||||||||| |||||||| |||||||| |||| ||||| Sbjct: 262 gaagctctgtatggtggcaccggcaactatgctagtgctctgttccttacagcggccaaa 321 Query: 61 gcaaattcgttggaaaaagttgaatccgagattggcgatgttgtaggggcagtcaagaag 120 || || | | |||| ||||||||| | |||||| |||||||||||| |||| ||||||| Sbjct: 322 gctaacttgctggacaaagttgaaactgagattcgcgatgttgtagaggcatccaagaag 381 Query: 121 agccctatgttttctcaattcataaaggactcatcagtgccaaaagcaaccagggtgaag 180 || || |||||||||||||||| ||||||| |||||||| |||| |||||||||||| Sbjct: 382 agtccattgttttctcaattcattaaggacttgtcagtgcccaaagagaccagggtgaag 441 Query: 181 gctgtaacagaaatattcgctgaagccaagttttctgacatcacacagaatttcttgtct 240 || |||| ||||| ||||||||||| ||||| || ||||| ||||||||||| || Sbjct: 442 gcaataactgaaattttcgctgaagctggtttttcagatgtcacaaagaatttcttggct 501 Query: 241 gtactggcgtccaatggaagactgaaatttgttgaacgcattgcggagagatttgttgat 300 || || || |||||| |||||||| |||| |||||||| ||||||||||||||| Sbjct: 502 gtgctcgccgacaatggcagactgaagcacattgatcgcattgctgagagatttgttgat 561 Query: 301 ttgaccatggcacacaggggggaggtgaaagttgttgtcaggactgttgttgcacttcct 360 |||||||||||||| | |||||||||||| || |||||||||| ||| || |||| || Sbjct: 562 ttgaccatggcacataagggggaggtgaaggtccttgtcaggacagttattccactcccc 621 Query: 361 gagaaggaggagaaagaacttaaggagaccttgcgagatatccttgggaaaaacaaaacc 420 || || |||||||| ||||||||||||||||||| |||||| |||||||| |||||||| Sbjct: 622 gaaaaagaggagaaggaacttaaggagaccttgcaagatattcttgggaagaacaaaact 681 Query: 421 atcttggttgaacaaaagattgaccagagtatcatgggaggactggtgattgaatttggg 480 |||||| ||||||| ||||||||| | || ||||||||||| || || ||| |||||||| Sbjct: 682 atcttgattgaacagaagattgactacagcatcatgggagggctagttattcaatttggg 741 Query: 481 cagagggtgtttgacatgtcgatcaggactagggcgaagcaaatggagtcgttcttgagg 540 |||| ||||||||| |||||||||| |||||||||||||||||||||| |||||||||| Sbjct: 742 cagaaggtgtttgatatgtcgatcaagactagggcgaagcaaatggagatgttcttgagg 801 Query: 541 caaccccttgacatgtaactgcctttcggatcaaaag 577 ||||||||||| || ||||||||||| ||||| |||| Sbjct: 802 caaccccttgatatctaactgccttttggatcgaaag 838
>dbj|AK101953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075I24, full insert sequence Length = 2362 Score = 446 bits (225), Expect = e-122 Identities = 489/577 (84%) Strand = Plus / Plus Query: 1 gaagctctgtatggtggcaccggcaactacgctagtgcgttgttccttgcagcagccaac 60 ||||||||||||||||||||||||||||| |||||||| |||||||| |||| ||||| Sbjct: 1616 gaagctctgtatggtggcaccggcaactatgctagtgctctgttccttacagcggccaaa 1675 Query: 61 gcaaattcgttggaaaaagttgaatccgagattggcgatgttgtaggggcagtcaagaag 120 || || | | |||| ||||||||| | |||||| |||||||||||| |||| ||||||| Sbjct: 1676 gctaacttgctggacaaagttgaaactgagattcgcgatgttgtagaggcatccaagaag 1735 Query: 121 agccctatgttttctcaattcataaaggactcatcagtgccaaaagcaaccagggtgaag 180 || || |||||||||||| ||| ||||||| |||||||| |||| |||||||||||| Sbjct: 1736 agtccattgttttctcaatccattaaggacttgtcagtgcccaaagagaccagggtgaag 1795 Query: 181 gctgtaacagaaatattcgctgaagccaagttttctgacatcacacagaatttcttgtct 240 || |||| ||||| ||||||||||| ||||| || ||||| ||||||||||| || Sbjct: 1796 gcaataactgaaattttcgctgaagctggtttttcagatgtcacaaagaatttcttggct 1855 Query: 241 gtactggcgtccaatggaagactgaaatttgttgaacgcattgcggagagatttgttgat 300 || || || |||||| |||||||| |||| |||||||| ||||||||||||||| Sbjct: 1856 gtgctcgccgacaatggcagactgaagcacattgatcgcattgctgagagatttgttgat 1915 Query: 301 ttgaccatggcacacaggggggaggtgaaagttgttgtcaggactgttgttgcacttcct 360 |||||||||||||| | |||||||||||| || |||||||||| ||| || |||| || Sbjct: 1916 ttgaccatggcacataagggggaggtgaaggtccttgtcaggacagttattccactcccc 1975 Query: 361 gagaaggaggagaaagaacttaaggagaccttgcgagatatccttgggaaaaacaaaacc 420 || || |||||||| ||||||||||||||||||| |||||| |||||||| |||||||| Sbjct: 1976 gaaaaagaggagaaggaacttaaggagaccttgcaagatattcttgggaagaacaaaact 2035 Query: 421 atcttggttgaacaaaagattgaccagagtatcatgggaggactggtgattgaatttggg 480 |||||| ||||||| ||||||||| | || ||||||||||| || || ||| |||||||| Sbjct: 2036 atcttgattgaacagaagattgactacagcatcatgggagggctagttattcaatttggg 2095 Query: 481 cagagggtgtttgacatgtcgatcaggactagggcgaagcaaatggagtcgttcttgagg 540 |||| ||||||||| |||||||||| |||||||||||||||||||||| |||||||||| Sbjct: 2096 cagaaggtgtttgatatgtcgatcaagactagggcgaagcaaatggagatgttcttgagg 2155 Query: 541 caaccccttgacatgtaactgcctttcggatcaaaag 577 ||||||||||| || ||||||||||| ||||| |||| Sbjct: 2156 caaccccttgatatctaactgccttttggatcgaaag 2192
>gb|AY103884.1| Zea mays PCO090977 mRNA sequence Length = 1134 Score = 373 bits (188), Expect = e-100 Identities = 473/568 (83%) Strand = Plus / Plus Query: 4 gctctgtatggtggcaccggcaactacgctagtgcgttgttccttgcagcagccaacgca 63 ||||||| ||| ||||| |||||||| || ||||| ||||||| ||||||| || | Sbjct: 269 gctctgtttggcggcacaggcaactatgccagtgcactgttcctcacagcagctaaatct 328 Query: 64 aattcgttggaaaaagttgaatccgagattggcgatgttgtaggggcagtcaagaagagc 123 ||| | ||||| ||||||||||| |||||| | | |||||| ||| |||||||||| Sbjct: 329 aatgcattggacaaagttgaatctgagattaaagctattgtagaggcttccaagaagagc 388 Query: 124 cctatgttttctcaattcataaaggactcatcagtgccaaaagcaaccagggtgaaggct 183 || |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct: 389 ccgttgttttctcaattcataaaggacttgtcagttccaaaagcgaccagggtgaaggct 448 Query: 184 gtaacagaaatattcgctgaagccaagttttctgacatcacacagaatttcttgtctgta 243 || | |||||||| ||||| || |||||| || | ||| ||||||||||| |||| Sbjct: 449 atagccgaaatatttgctgacgctgggttttcagatgttacaaagaatttcttggctgtc 508 Query: 244 ctggcgtccaatggaagactgaaatttgttgaacgcattgcggagagatttgttgatttg 303 |||||| |||||| || ||||||| | |||||||||||||||||||||||||||||||| Sbjct: 509 ctggcggacaatggcaggctgaaatatattgaacgcattgcggagagatttgttgatttg 568 Query: 304 accatggcacacaggggggaggtgaaagttgttgtcaggactgttgttgcacttcctgag 363 || |||| ||| | ||||||| |||| ||||| |||||||| ||| || |||| | || Sbjct: 569 actatggaacataagggggagatgaaggttgtggtcaggacagttatttcactcaccaag 628 Query: 364 aaggaggagaaagaacttaaggagaccttgcgagatatccttgggaaaaacaaaaccatc 423 |||||||||||||||| ||||| ||||||| |||||||||||| |||||||||| || Sbjct: 629 gaggaggagaaagaactcaaggaaaccttgcaggatatccttggggaaaacaaaactatt 688 Query: 424 ttggttgaacaaaagattgaccagagtatcatgggaggactggtgattgaatttgggcag 483 ||||||||||| ||||||||| | || |||||||||||| | ||||||||||| |||||| Sbjct: 689 ttggttgaacagaagattgactacagcatcatgggaggattagtgattgaattcgggcag 748 Query: 484 agggtgtttgacatgtcgatcaggactagggcgaagcaaatggagtcgttcttgaggcaa 543 | |||| |||| || || ||||||| |||||||||||||||||| |||||||||||||| Sbjct: 749 aaggtgcttgatatctcaatcaggaacagggcgaagcaaatggaggcgttcttgaggcaa 808 Query: 544 ccccttgacatgtaactgcctttcggat 571 || |||||| | |||| |||||| |||| Sbjct: 809 ccacttgacttctaacagccttttggat 836
>gb|BT016671.1| Zea mays clone Contig504 mRNA sequence Length = 1081 Score = 345 bits (174), Expect = 1e-91 Identities = 457/550 (83%), Gaps = 1/550 (0%) Strand = Plus / Plus Query: 4 gctctgtatggtggcaccggcaactacgctagtgcgttgttccttgcagcagccaacgca 63 ||||||| ||| ||||| |||||||| || ||||| ||||||| ||||||| || | Sbjct: 226 gctctgtttggcggcacaggcaactatgccagtgcactgttcctcacagcagctaaatct 285 Query: 64 aattcgttggaaaaagttgaatccgagattggcgatgttgtaggggcagtcaagaagagc 123 ||| | ||||| ||||||||||| |||||| | | |||||| ||| |||||||||| Sbjct: 286 aatgcattggacaaagttgaatctgagattaaagctattgtagaggcttccaagaagagc 345 Query: 124 cctatgttttctcaattcataaaggactcatcagtgccaaaagcaaccagggtgaaggct 183 || |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct: 346 ccgttgttttctcaattcataaaggacttgtcagttccaaaagcgaccagggtgaaggct 405 Query: 184 gtaacagaaatattcgctgaagccaagttttctgacatcacacagaatttcttgtctgta 243 || | |||||||| ||||| || |||||| || | ||| ||||||||||| |||| Sbjct: 406 atagccgaaatatttgctgacgctgggttttcagatgttacaaagaatttcttggctgtc 465 Query: 244 ctggcgtccaatggaagactgaaatttgttgaacgcattgcggagagatttgttgatttg 303 |||||| |||||| || ||||||| | |||||||||||||||||||||||||||||||| Sbjct: 466 ctggcggacaatggcaggctgaaatatattgaacgcattgcggagagatttgttgatttg 525 Query: 304 accatggcacacaggggggaggtgaaagttgttgtcaggactgttgttgcacttcctgag 363 || |||| ||| | ||||||| |||| ||||| |||||||| ||| || |||| | || Sbjct: 526 actatggaacataagggggagatgaaggttgtggtcaggacagttatttcactcaccaag 585 Query: 364 aaggaggagaaagaacttaaggagaccttgcgagatatccttgggaaaaacaaaaccatc 423 |||||||||||||||| ||||| ||||||| |||||||||||| |||||||||| || Sbjct: 586 gaggaggagaaagaactcaaggaaaccttgcaggatatccttggggaaaacaaaactatt 645 Query: 424 ttggttgaacaaaagattgaccagagtatcatgggaggactggtgattgaatttgggcag 483 ||||||||||| ||||||||| | || |||||||||||| | ||||||||||| |||||| Sbjct: 646 ttggttgaacagaagattgactacagcatcatgggaggattagtgattgaattcgggcag 705 Query: 484 agggtgtttgacat-gtcgatcaggactagggcgaagcaaatggagtcgttcttgaggca 542 | |||| |||| || || ||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 706 aaggtgcttgatatcctcaatcaggaacagggcgaaccaaatggaggcgttcttgaggca 765 Query: 543 accccttgac 552 ||| |||||| Sbjct: 766 accacttgac 775
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 170 bits (86), Expect = 3e-39 Identities = 176/206 (85%) Strand = Plus / Plus Query: 1 gaagctctgtatggtggcaccggcaactacgctagtgcgttgttccttgcagcagccaac 60 ||||||||||||||||||||||||||||| |||||||| |||||||| |||| ||||| Sbjct: 26025470 gaagctctgtatggtggcaccggcaactatgctagtgctctgttccttacagcggccaaa 26025529 Query: 61 gcaaattcgttggaaaaagttgaatccgagattggcgatgttgtaggggcagtcaagaag 120 || || | | |||| ||||||||| | |||||| |||||||||||| |||| ||||||| Sbjct: 26025530 gctaacttgctggacaaagttgaaactgagattcgcgatgttgtagaggcatccaagaag 26025589 Query: 121 agccctatgttttctcaattcataaaggactcatcagtgccaaaagcaaccagggtgaag 180 || || |||||||||||||||| ||||||| |||||||| |||| |||||||||||| Sbjct: 26025590 agtccattgttttctcaattcattaaggacttgtcagtgcccaaagagaccagggtgaag 26025649 Query: 181 gctgtaacagaaatattcgctgaagc 206 || |||| ||||| ||||||||||| Sbjct: 26025650 gcaataactgaaattttcgctgaagc 26025675 Score = 153 bits (77), Expect = 8e-34 Identities = 125/141 (88%) Strand = Plus / Plus Query: 437 agattgaccagagtatcatgggaggactggtgattgaatttgggcagagggtgtttgaca 496 |||||||| | || ||||||||||| || || ||| |||||||||||| ||||||||| | Sbjct: 26026841 agattgactacagcatcatgggagggctagttattcaatttgggcagaaggtgtttgata 26026900 Query: 497 tgtcgatcaggactagggcgaagcaaatggagtcgttcttgaggcaaccccttgacatgt 556 ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || | Sbjct: 26026901 tgtcgatcaagactagggcgaagcaaatggagatgttcttgaggcaaccccttgatatct 26026960 Query: 557 aactgcctttcggatcaaaag 577 |||||||||| ||||| |||| Sbjct: 26026961 aactgccttttggatcgaaag 26026981 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Plus Query: 272 ttgaacgcattgcggagagatttgttgatttgaccatggcacacaggggggaggtgaaag 331 |||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||| | Sbjct: 26026159 ttgatcgcattgctgagagatttgttgatttgaccatggcacataagggggaggtgaagg 26026218 Query: 332 ttgttgtcaggac 344 | |||||||||| Sbjct: 26026219 tccttgtcaggac 26026231 Score = 87.7 bits (44), Expect = 4e-14 Identities = 62/68 (91%) Strand = Plus / Plus Query: 367 gaggagaaagaacttaaggagaccttgcgagatatccttgggaaaaacaaaaccatcttg 426 |||||||| ||||||||||||||||||| |||||| |||||||| |||||||| |||||| Sbjct: 26026690 gaggagaaggaacttaaggagaccttgcaagatattcttgggaagaacaaaactatcttg 26026749 Query: 427 gttgaaca 434 ||||||| Sbjct: 26026750 attgaaca 26026757
>dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1226_A12 Length = 113025 Score = 170 bits (86), Expect = 3e-39 Identities = 176/206 (85%) Strand = Plus / Plus Query: 1 gaagctctgtatggtggcaccggcaactacgctagtgcgttgttccttgcagcagccaac 60 ||||||||||||||||||||||||||||| |||||||| |||||||| |||| ||||| Sbjct: 63328 gaagctctgtatggtggcaccggcaactatgctagtgctctgttccttacagcggccaaa 63387 Query: 61 gcaaattcgttggaaaaagttgaatccgagattggcgatgttgtaggggcagtcaagaag 120 || || | | |||| ||||||||| | |||||| |||||||||||| |||| ||||||| Sbjct: 63388 gctaacttgctggacaaagttgaaactgagattcgcgatgttgtagaggcatccaagaag 63447 Query: 121 agccctatgttttctcaattcataaaggactcatcagtgccaaaagcaaccagggtgaag 180 || || |||||||||||||||| ||||||| |||||||| |||| |||||||||||| Sbjct: 63448 agtccattgttttctcaattcattaaggacttgtcagtgcccaaagagaccagggtgaag 63507 Query: 181 gctgtaacagaaatattcgctgaagc 206 || |||| ||||| ||||||||||| Sbjct: 63508 gcaataactgaaattttcgctgaagc 63533 Score = 153 bits (77), Expect = 8e-34 Identities = 125/141 (88%) Strand = Plus / Plus Query: 437 agattgaccagagtatcatgggaggactggtgattgaatttgggcagagggtgtttgaca 496 |||||||| | || ||||||||||| || || ||| |||||||||||| ||||||||| | Sbjct: 64699 agattgactacagcatcatgggagggctagttattcaatttgggcagaaggtgtttgata 64758 Query: 497 tgtcgatcaggactagggcgaagcaaatggagtcgttcttgaggcaaccccttgacatgt 556 ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || | Sbjct: 64759 tgtcgatcaagactagggcgaagcaaatggagatgttcttgaggcaaccccttgatatct 64818 Query: 557 aactgcctttcggatcaaaag 577 |||||||||| ||||| |||| Sbjct: 64819 aactgccttttggatcgaaag 64839 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Plus Query: 272 ttgaacgcattgcggagagatttgttgatttgaccatggcacacaggggggaggtgaaag 331 |||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||| | Sbjct: 64017 ttgatcgcattgctgagagatttgttgatttgaccatggcacataagggggaggtgaagg 64076 Query: 332 ttgttgtcaggac 344 | |||||||||| Sbjct: 64077 tccttgtcaggac 64089 Score = 87.7 bits (44), Expect = 4e-14 Identities = 62/68 (91%) Strand = Plus / Plus Query: 367 gaggagaaagaacttaaggagaccttgcgagatatccttgggaaaaacaaaaccatcttg 426 |||||||| ||||||||||||||||||| |||||| |||||||| |||||||| |||||| Sbjct: 64548 gaggagaaggaacttaaggagaccttgcaagatattcttgggaagaacaaaactatcttg 64607 Query: 427 gttgaaca 434 ||||||| Sbjct: 64608 attgaaca 64615
>dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062J02 Length = 151636 Score = 170 bits (86), Expect = 3e-39 Identities = 176/206 (85%) Strand = Plus / Plus Query: 1 gaagctctgtatggtggcaccggcaactacgctagtgcgttgttccttgcagcagccaac 60 ||||||||||||||||||||||||||||| |||||||| |||||||| |||| ||||| Sbjct: 4715 gaagctctgtatggtggcaccggcaactatgctagtgctctgttccttacagcggccaaa 4774 Query: 61 gcaaattcgttggaaaaagttgaatccgagattggcgatgttgtaggggcagtcaagaag 120 || || | | |||| ||||||||| | |||||| |||||||||||| |||| ||||||| Sbjct: 4775 gctaacttgctggacaaagttgaaactgagattcgcgatgttgtagaggcatccaagaag 4834 Query: 121 agccctatgttttctcaattcataaaggactcatcagtgccaaaagcaaccagggtgaag 180 || || |||||||||||||||| ||||||| |||||||| |||| |||||||||||| Sbjct: 4835 agtccattgttttctcaattcattaaggacttgtcagtgcccaaagagaccagggtgaag 4894 Query: 181 gctgtaacagaaatattcgctgaagc 206 || |||| ||||| ||||||||||| Sbjct: 4895 gcaataactgaaattttcgctgaagc 4920 Score = 153 bits (77), Expect = 8e-34 Identities = 125/141 (88%) Strand = Plus / Plus Query: 437 agattgaccagagtatcatgggaggactggtgattgaatttgggcagagggtgtttgaca 496 |||||||| | || ||||||||||| || || ||| |||||||||||| ||||||||| | Sbjct: 6086 agattgactacagcatcatgggagggctagttattcaatttgggcagaaggtgtttgata 6145 Query: 497 tgtcgatcaggactagggcgaagcaaatggagtcgttcttgaggcaaccccttgacatgt 556 ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || | Sbjct: 6146 tgtcgatcaagactagggcgaagcaaatggagatgttcttgaggcaaccccttgatatct 6205 Query: 557 aactgcctttcggatcaaaag 577 |||||||||| ||||| |||| Sbjct: 6206 aactgccttttggatcgaaag 6226 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Plus Query: 272 ttgaacgcattgcggagagatttgttgatttgaccatggcacacaggggggaggtgaaag 331 |||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||| | Sbjct: 5404 ttgatcgcattgctgagagatttgttgatttgaccatggcacataagggggaggtgaagg 5463 Query: 332 ttgttgtcaggac 344 | |||||||||| Sbjct: 5464 tccttgtcaggac 5476 Score = 87.7 bits (44), Expect = 4e-14 Identities = 62/68 (91%) Strand = Plus / Plus Query: 367 gaggagaaagaacttaaggagaccttgcgagatatccttgggaaaaacaaaaccatcttg 426 |||||||| ||||||||||||||||||| |||||| |||||||| |||||||| |||||| Sbjct: 5935 gaggagaaggaacttaaggagaccttgcaagatattcttgggaagaacaaaactatcttg 5994 Query: 427 gttgaaca 434 ||||||| Sbjct: 5995 attgaaca 6002
>dbj|D10422.1|RIC480 Oryza sativa mRNA for F1-ATPase (480 gene), partial sequence Length = 490 Score = 113 bits (57), Expect = 7e-22 Identities = 151/184 (82%) Strand = Plus / Plus Query: 227 agaatttcttgtctgtactggcgtccaatggaagactgaaatttgttgaacgcattgcgg 286 ||||||||||| |||| || || ||||||||||||||| |||| || ||||| | Sbjct: 45 agaatttcttggctgtgctcgcngacaatggaagactgaagcacattgatcgnattgctg 104 Query: 287 agagatttgttgatttgaccatggcacacaggggggaggtgaaagttgttgtcaggactg 346 ||||||||||||||||| ||||||||| | |||||||||||| || |||||||||| | Sbjct: 105 agagatttgttgatttgnncatggcacataagggggaggtgaaggtncttgtcaggacag 164 Query: 347 ttgttgcacttcctgagaaggaggagaaagaacttaaggagaccttgcgagatatccttg 406 || || |||| || || || |||||||| | ||||||||||||||| | |||||| |||| Sbjct: 165 ttattccactccccgaaaaagaggagaaggcacttaaggagaccttccaagatattcttg 224 Query: 407 ggaa 410 |||| Sbjct: 225 ggaa 228
>ref|XM_679703.1| PREDICTED: Danio rerio similar to IL-6 subfamily-like cytokine M17 (LOC556802), mRNA Length = 1083 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 351 tgcacttcctgagaaggaggag 372 |||||||||||||||||||||| Sbjct: 360 tgcacttcctgagaaggaggag 381
>ref|XM_678310.1| PREDICTED: Danio rerio similar to IL-6 subfamily-like cytokine M17 (LOC555717), mRNA Length = 1083 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 351 tgcacttcctgagaaggaggag 372 |||||||||||||||||||||| Sbjct: 360 tgcacttcctgagaaggaggag 381
>emb|BX005415.5| Zebrafish DNA sequence from clone DKEY-21I5 in linkage group 5, complete sequence Length = 243510 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 351 tgcacttcctgagaaggaggag 372 |||||||||||||||||||||| Sbjct: 171107 tgcacttcctgagaaggaggag 171086
>emb|BX004981.4| Zebrafish DNA sequence from clone CH211-169J7 in linkage group 7, complete sequence Length = 162525 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 351 tgcacttcctgagaaggaggag 372 |||||||||||||||||||||| Sbjct: 122465 tgcacttcctgagaaggaggag 122444
>gb|AC140438.3| Mus musculus BAC clone RP24-106N10 from 12, complete sequence Length = 154736 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 169 accagggtgaaggctgtaacag 190 |||||||||||||||||||||| Sbjct: 30956 accagggtgaaggctgtaacag 30935
>emb|CT009764.9| Mouse DNA sequence from clone RP23-173E21 on chromosome 12, complete sequence Length = 214925 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 169 accagggtgaaggctgtaacag 190 |||||||||||||||||||||| Sbjct: 78220 accagggtgaaggctgtaacag 78199
>emb|CR376773.7| Zebrafish DNA sequence from clone CH211-23E22 in linkage group 17, complete sequence Length = 167088 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 215 ctgacatcacacagaatttct 235 ||||||||||||||||||||| Sbjct: 158055 ctgacatcacacagaatttct 158035
>gb|AY442327.1| Homo sapiens Werner syndrome (WRN) gene, complete cds Length = 143624 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 ctatgttttctcaattcataa 145 ||||||||||||||||||||| Sbjct: 133095 ctatgttttctcaattcataa 133075
>gb|AC119236.8| Mus musculus chromosome 19, clone RP24-213B12, complete sequence Length = 163348 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 354 acttcctgagaaggaggagaaagaa 378 ||||||||||| ||||||||||||| Sbjct: 40816 acttcctgagagggaggagaaagaa 40792
>emb|AL592044.4| Human DNA sequence from clone RP13-407F1 on chromosome 13, complete sequence Length = 236130 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 212 tttctgacatcacacagaatttctt 236 |||||||||||| |||||||||||| Sbjct: 170638 tttctgacatcatacagaatttctt 170614
>gb|AC009563.12| Homo sapiens chromosome 8, clone RP11-363L24, complete sequence Length = 189944 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 ctatgttttctcaattcataa 145 ||||||||||||||||||||| Sbjct: 101499 ctatgttttctcaattcataa 101519
>gb|AC154177.2| Mus musculus BAC clone RP23-465J20 from chromosome 17, complete sequence Length = 206481 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 aggagaaagaacttaaggaga 388 ||||||||||||||||||||| Sbjct: 148913 aggagaaagaacttaaggaga 148893
>gb|AC092840.4| Homo sapiens BAC clone RP11-258O11 from 2, complete sequence Length = 133042 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 ctatgttttctcaattcataa 145 ||||||||||||||||||||| Sbjct: 127281 ctatgttttctcaattcataa 127301
>emb|BX004996.8| Zebrafish DNA sequence from clone CH211-268F23 in linkage group 6, complete sequence Length = 167320 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 215 ctgacatcacacagaatttct 235 ||||||||||||||||||||| Sbjct: 134965 ctgacatcacacagaatttct 134945
>gb|AC154123.9| Mus musculus chromosome 5, clone RP24-324D14, complete sequence Length = 175751 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 368 aggagaaagaacttaaggaga 388 ||||||||||||||||||||| Sbjct: 91376 aggagaaagaacttaaggaga 91396
>gb|AF181897.1|HSWRNG2 Homo sapiens WRN (WRN) gene, complete cds Length = 87543 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 ctatgttttctcaattcataa 145 ||||||||||||||||||||| Sbjct: 45123 ctatgttttctcaattcataa 45103
>dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11E23, TM0557 Length = 87695 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 395 gagatatccttgggaaaaaca 415 ||||||||||||||||||||| Sbjct: 56219 gagatatccttgggaaaaaca 56199
>dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01N11, TM0177, complete sequence Length = 133589 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 gagatatccttgggaaaaaca 415 ||||||||||||||||||||| Sbjct: 128790 gagatatccttgggaaaaaca 128810
>emb|AL844172.8| Zebrafish DNA sequence from clone DKEY-223H12, complete sequence Length = 163195 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 caattcataaaggactcatca 156 ||||||||||||||||||||| Sbjct: 126120 caattcataaaggactcatca 126100
>emb|AL603804.18| Mouse DNA sequence from clone RP23-470C16 on chromosome 11, complete sequence Length = 189196 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 354 acttcctgagaaggaggagaaagaa 378 ||||||||||| ||||||||||||| Sbjct: 83730 acttcctgagagggaggagaaagaa 83754
>gb|AY441091.1| Armigeres subalbatus ASAP ID: 39599 putative: c-type lectin mRNA sequence Length = 613 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 394 cgagatatccttgggaaaaacaaa 417 ||||||||||||| |||||||||| Sbjct: 117 cgagatatccttgcgaaaaacaaa 140
>emb|AL390959.12| Human DNA sequence from clone RP1-44L3 on chromosome 6 Contains a CpG island, complete sequence Length = 105239 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 gagaaggaggagaaagaact 380 |||||||||||||||||||| Sbjct: 19160 gagaaggaggagaaagaact 19179
>emb|AL353764.9| Human DNA sequence from clone RP11-440G5 on chromosome 9 Contains the NFIL3 gene for interleukin 3 regulated nuclear factor, a novel gene and two CpG islands, complete sequence Length = 170898 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 atgttttctcaattcataaa 146 |||||||||||||||||||| Sbjct: 47439 atgttttctcaattcataaa 47420
>gb|BC098580.1| Homo sapiens Rho GTPase activating protein 24, mRNA (cDNA clone MGC:111398 IMAGE:30923119), complete cds Length = 2768 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ctgagaaggaggagaaagaa 378 |||||||||||||||||||| Sbjct: 24 ctgagaaggaggagaaagaa 43
>emb|AL669827.5| Mouse DNA sequence from clone RP23-350D17 on chromosome 11 Contains a PDZ domain containing guanine (Pdzgef1) pseudogene, a tubulin alpha 4 (Tuba4) pseudogene , an olfactory receptor pseudogene, a novel pseudogene and the 3' end of a novel gene, complete sequence Length = 108424 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 aggaggagaaagaacttaag 384 |||||||||||||||||||| Sbjct: 73814 aggaggagaaagaacttaag 73833
>gb|AC124657.5| Homo sapiens chromosome 11, clone RP11-624D11, complete sequence Length = 155985 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 gaggagaaagaacttaagga 386 |||||||||||||||||||| Sbjct: 108357 gaggagaaagaacttaagga 108376
>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome Length = 2225959 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 gaggagaaagaacttaagga 386 |||||||||||||||||||| Sbjct: 1748606 gaggagaaagaacttaagga 1748625
>gb|AC027031.5| Homo sapiens chromosome 8, clone RP11-778D12, complete sequence Length = 175125 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 ctgagaaggaggagaaagaa 378 |||||||||||||||||||| Sbjct: 72543 ctgagaaggaggagaaagaa 72524
>ref|NM_001038982.1| Drosophila melanogaster CG33970-RA, transcript variant A (CG33970), mRNA Length = 3387 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 gagatttgttgatttgacca 307 |||||||||||||||||||| Sbjct: 2220 gagatttgttgatttgacca 2201
>ref|NM_001038981.1| Drosophila melanogaster CG33970-RB, transcript variant B (CG33970), mRNA Length = 2025 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 gagatttgttgatttgacca 307 |||||||||||||||||||| Sbjct: 858 gagatttgttgatttgacca 839
>gb|AC093788.3| Homo sapiens BAC clone RP11-218F10 from 4, complete sequence Length = 160853 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ctgagaaggaggagaaagaa 378 |||||||||||||||||||| Sbjct: 121128 ctgagaaggaggagaaagaa 121147
>gb|AC091629.1|AC091629 Mus musculus chromosome 11 map 11, 64cM, Band E1, complete sequence Length = 161334 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 ttcctgagaaggaggagaaa 375 |||||||||||||||||||| Sbjct: 66438 ttcctgagaaggaggagaaa 66419
>gb|AY058373.1| Drosophila melanogaster GH14066 full length cDNA Length = 1574 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 gagatttgttgatttgacca 307 |||||||||||||||||||| Sbjct: 391 gagatttgttgatttgacca 372
>tpg|BK000438.1| TPA: TPA_exp: Homo sapiens RING finger protein COP1 gene, complete cds Length = 421987 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ctgagaaggaggagaaagaa 378 |||||||||||||||||||| Sbjct: 322400 ctgagaaggaggagaaagaa 322419
>gb|AC096967.18| Homo sapiens 3 BAC RP11-200A1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 123251 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 gaaggaggagaaagaacttaagga 386 |||||||||||||||| ||||||| Sbjct: 76635 gaaggaggagaaagaagttaagga 76658
>gb|BT003531.1| Drosophila melanogaster RE14039 full insert cDNA Length = 3401 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 gagatttgttgatttgacca 307 |||||||||||||||||||| Sbjct: 2220 gagatttgttgatttgacca 2201
>gb|AC097108.5| Homo sapiens BAC clone RP11-745K4 from 4, complete sequence Length = 207516 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ctgagaaggaggagaaagaa 378 |||||||||||||||||||| Sbjct: 86699 ctgagaaggaggagaaagaa 86718
>emb|AL929156.10| Mouse DNA sequence from clone RP23-475H18 on chromosome 2, complete sequence Length = 206918 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ttgttgtcaggactgttgtt 351 |||||||||||||||||||| Sbjct: 80620 ttgttgtcaggactgttgtt 80601
>gb|AC171010.3| Gallus gallus BAC clone CH261-161I5 from chromosome ul, complete sequence Length = 245010 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 cttcctgagaaggaggagaaagaa 378 ||||| |||||||||||||||||| Sbjct: 236830 cttccagagaaggaggagaaagaa 236807
>emb|AL590723.13| Human DNA sequence from clone RP11-492I21 on chromosome 1 Contains part of the gene for constitutive photomorphogenic protein (COP1) and a novel gene, complete sequence Length = 178223 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 ctgagaaggaggagaaagaa 378 |||||||||||||||||||| Sbjct: 20170 ctgagaaggaggagaaagaa 20151
>gb|AC122293.3| Mus musculus BAC clone RP23-257O9 from 10, complete sequence Length = 209942 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 caatggaagactgaaatttg 271 |||||||||||||||||||| Sbjct: 60939 caatggaagactgaaatttg 60920
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 cgagattggcgatgttgtag 106 |||||||||||||||||||| Sbjct: 304271 cgagattggcgatgttgtag 304252
>emb|AL593843.9| Mouse DNA sequence from clone RP23-136D4 on chromosome 11, complete sequence Length = 198281 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 ttcctgagaaggaggagaaa 375 |||||||||||||||||||| Sbjct: 159331 ttcctgagaaggaggagaaa 159312
>dbj|AP003694.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1931E2, complete sequence Length = 159287 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ctgagaaggaggagaaagaa 378 |||||||||||||||||||| Sbjct: 135632 ctgagaaggaggagaaagaa 135651 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,863,420 Number of Sequences: 3902068 Number of extensions: 6863420 Number of successful extensions: 141156 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 140956 Number of HSP's gapped (non-prelim): 190 length of query: 609 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 586 effective length of database: 17,143,297,704 effective search space: 10045972454544 effective search space used: 10045972454544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)