ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags33c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC093133.3| Papio anubis clone RP41-57F8, complete sequence 42 0.62
2emb|AL355137.23| Human DNA sequence from clone RP11-511D14 on ch... 40 2.4
3gb|AC023449.11| Homo sapiens chromosome 15, clone RP11-345J18, c... 40 2.4
4gb|AC109512.12| Homo sapiens chromosome 15, clone RP11-931B1, co... 40 2.4
5gb|AC101854.8| Mus musculus chromosome 1, clone RP23-298H18, com... 38 9.6
6ref|XM_993466.1| PREDICTED: Mus musculus carbamoyl-phosphate syn... 38 9.6
7ref|XM_986847.1| PREDICTED: Mus musculus carbamoyl-phosphate syn... 38 9.6
8ref|XM_912076.2| PREDICTED: Mus musculus carbamoyl-phosphate syn... 38 9.6
9ref|XM_129769.8| PREDICTED: Mus musculus carbamoyl-phosphate syn... 38 9.6

>gb|AC093133.3| Papio anubis clone RP41-57F8, complete sequence
          Length = 177993

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 49     tggaagtggcctgggtgctgt 69
              |||||||||||||||||||||
Sbjct: 119390 tggaagtggcctgggtgctgt 119370



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>emb|AL355137.23| Human DNA sequence from clone RP11-511D14 on chromosome 6p23-24.3
            Contains the gene for a novel protein isentical to
            ribosomal protein L15 (RPL15), complete sequence
          Length = 190223

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  tgtaaagtgggtttggtcac 127
            ||||||||||||||||||||
Sbjct: 8451 tgtaaagtgggtttggtcac 8470



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>gb|AC023449.11| Homo sapiens chromosome 15, clone RP11-345J18, complete sequence
          Length = 175336

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    tggcctgggtgctgtactcc 74
             ||||||||||||||||||||
Sbjct: 99430 tggcctgggtgctgtactcc 99411



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>gb|AC109512.12| Homo sapiens chromosome 15, clone RP11-931B1, complete sequence
          Length = 189975

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     tggcctgggtgctgtactcc 74
              ||||||||||||||||||||
Sbjct: 175807 tggcctgggtgctgtactcc 175788



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>gb|AC101854.8| Mus musculus chromosome 1, clone RP23-298H18, complete sequence
          Length = 190474

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 20     cccaagtgacgaacaacat 38
              |||||||||||||||||||
Sbjct: 147676 cccaagtgacgaacaacat 147694



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>ref|XM_993466.1| PREDICTED: Mus musculus carbamoyl-phosphate synthetase 1, transcript
            variant 2 (Cps1), mRNA
          Length = 5562

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 20   cccaagtgacgaacaacat 38
            |||||||||||||||||||
Sbjct: 2213 cccaagtgacgaacaacat 2195



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>ref|XM_986847.1| PREDICTED: Mus musculus carbamoyl-phosphate synthetase 1, transcript
            variant 5 (Cps1), mRNA
          Length = 5587

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 20   cccaagtgacgaacaacat 38
            |||||||||||||||||||
Sbjct: 2231 cccaagtgacgaacaacat 2213



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>ref|XM_912076.2| PREDICTED: Mus musculus carbamoyl-phosphate synthetase 1, transcript
            variant 4 (Cps1), mRNA
          Length = 5569

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 20   cccaagtgacgaacaacat 38
            |||||||||||||||||||
Sbjct: 2213 cccaagtgacgaacaacat 2195



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>ref|XM_129769.8| PREDICTED: Mus musculus carbamoyl-phosphate synthetase 1, transcript
            variant 1 (Cps1), mRNA
          Length = 5562

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 20   cccaagtgacgaacaacat 38
            |||||||||||||||||||
Sbjct: 2213 cccaagtgacgaacaacat 2195


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 945,628
Number of Sequences: 3902068
Number of extensions: 945628
Number of successful extensions: 59274
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59260
Number of HSP's gapped (non-prelim): 14
length of query: 194
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 172
effective length of database: 17,147,199,772
effective search space: 2949318360784
effective search space used: 2949318360784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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