ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags33b21 |
|---|---|
| Clone Library Name | barley_pub |
>NIPA2_PONPY (Q5R7Q3) Non-imprinted in Prader-Willi/Angelman syndrome region| protein 2 homolog Length = 360 Score = 176 bits (447), Expect = 4e-44 Identities = 90/208 (43%), Positives = 128/208 (61%), Gaps = 1/208 (0%) Frame = +3 Query: 15 LAVSSSAFIGASFIVKKMGLRRAADSG-VRAGYGGYSYLVEPLWWIGMISMIVGEIXXXX 191 LA+SSS FIG SFI+KK GL R A G +RAG GG++YL E LWW G++SM GE+ Sbjct: 16 LAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEVANFA 75 Query: 192 XXXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFGILGCVLCVVGSITIALHAPQERD 371 LVTP E+L+ G +GC+L ++GS + +HAP+E + Sbjct: 76 AYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPKEEE 135 Query: 372 IDSVREVWDLATEPAFLSYATVVVVAALFLIYFVVPQHGQTNIMVYIGVCSLLGSLTVMS 551 I+++ E+ +P F+ +AT+VV+ AL LI+ V P+HGQTNI+VYI +CS++G+ +V Sbjct: 136 IETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFSVSC 195 Query: 552 VKALGIALKLTFSGVNQLFYPQTWAFAL 635 VK LGIA+K F+G L +P W L Sbjct: 196 VKGLGIAIKELFAGKPVLRHPLAWILLL 223
>NIPA2_HUMAN (Q8N8Q9) Non-imprinted in Prader-Willi/Angelman syndrome region| protein 2 Length = 360 Score = 176 bits (447), Expect = 4e-44 Identities = 90/208 (43%), Positives = 128/208 (61%), Gaps = 1/208 (0%) Frame = +3 Query: 15 LAVSSSAFIGASFIVKKMGLRRAADSG-VRAGYGGYSYLVEPLWWIGMISMIVGEIXXXX 191 LA+SSS FIG SFI+KK GL R A G +RAG GG++YL E LWW G++SM GE+ Sbjct: 16 LAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEVANFA 75 Query: 192 XXXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFGILGCVLCVVGSITIALHAPQERD 371 LVTP E+L+ G +GC+L ++GS + +HAP+E + Sbjct: 76 AYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPKEEE 135 Query: 372 IDSVREVWDLATEPAFLSYATVVVVAALFLIYFVVPQHGQTNIMVYIGVCSLLGSLTVMS 551 I+++ E+ +P F+ +AT+VV+ AL LI+ V P+HGQTNI+VYI +CS++G+ +V Sbjct: 136 IETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFSVSC 195 Query: 552 VKALGIALKLTFSGVNQLFYPQTWAFAL 635 VK LGIA+K F+G L +P W L Sbjct: 196 VKGLGIAIKELFAGKPVLRHPLAWILLL 223
>NIPA2_MOUSE (Q9JJC8) Non-imprinted in Prader-Willi/Angelman syndrome region| protein 2 homolog Length = 359 Score = 170 bits (430), Expect = 4e-42 Identities = 86/204 (42%), Positives = 124/204 (60%), Gaps = 1/204 (0%) Frame = +3 Query: 15 LAVSSSAFIGASFIVKKMGLRRAADSG-VRAGYGGYSYLVEPLWWIGMISMIVGEIXXXX 191 LA++SS FIG SFI+KK GL R A G +RAG GG++YL E LWW G++SM GE+ Sbjct: 16 LAMTSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEVANFA 75 Query: 192 XXXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFGILGCVLCVVGSITIALHAPQERD 371 LVTP E+L+ G +GC+L ++GS + +HAP+E + Sbjct: 76 AYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPKEEE 135 Query: 372 IDSVREVWDLATEPAFLSYATVVVVAALFLIYFVVPQHGQTNIMVYIGVCSLLGSLTVMS 551 I+++ E+ +P F+ +AT VV+ AL I+ V P+HGQTNI+VYI +CS++G+ +V Sbjct: 136 IETLNEMSHKLGDPGFVVFATFVVIVALIFIFVVGPRHGQTNILVYITICSVIGAFSVSC 195 Query: 552 VKALGIALKLTFSGVNQLFYPQTW 623 VK LGIA+K +G L +P W Sbjct: 196 VKGLGIAIKELLAGKPVLQHPLAW 219
>NIPA1_MOUSE (Q8BHK1) Non-imprinted in Prader-Willi/Angelman syndrome region| protein 1 homolog Length = 323 Score = 137 bits (344), Expect = 4e-32 Identities = 70/186 (37%), Positives = 104/186 (55%) Frame = +3 Query: 15 LAVSSSAFIGASFIVKKMGLRRAADSGVRAGYGGYSYLVEPLWWIGMISMIVGEIXXXXX 194 +AV SS G++F+++K G+ VRA G SYL + +WW G I+M VG+I Sbjct: 28 VAVVSSLVNGSTFVLQKKGI-------VRAKRRGTSYLTDIVWWAGTIAMAVGQIGNFLA 80 Query: 195 XXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFGILGCVLCVVGSITIALHAPQERDI 374 +LVTP +EKL+ G LGC+L GS+ + +H+P+ + Sbjct: 81 YTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSPKSESV 140 Query: 375 DSVREVWDLATEPAFLSYATVVVVAALFLIYFVVPQHGQTNIMVYIGVCSLLGSLTVMSV 554 + E+ + T P F+ Y +V++ L LI+++ P HG TNIMVYI +CSLLGS TV S Sbjct: 141 TTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSFTVPST 200 Query: 555 KALGIA 572 K +G+A Sbjct: 201 KGIGLA 206
>NIPA1_HUMAN (Q7RTP0) Non-imprinted in Prader-Willi/Angelman syndrome region| protein 1 Length = 329 Score = 137 bits (344), Expect = 4e-32 Identities = 70/186 (37%), Positives = 104/186 (55%) Frame = +3 Query: 15 LAVSSSAFIGASFIVKKMGLRRAADSGVRAGYGGYSYLVEPLWWIGMISMIVGEIXXXXX 194 +AV SS G++F+++K G+ VRA G SYL + +WW G I+M VG+I Sbjct: 34 VAVVSSLVNGSTFVLQKKGI-------VRAKRRGTSYLTDIVWWAGTIAMAVGQIGNFLA 86 Query: 195 XXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFGILGCVLCVVGSITIALHAPQERDI 374 +LVTP +EKL+ G LGC+L GS+ + +H+P+ + Sbjct: 87 YTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSPKSESV 146 Query: 375 DSVREVWDLATEPAFLSYATVVVVAALFLIYFVVPQHGQTNIMVYIGVCSLLGSLTVMSV 554 + E+ + T P F+ Y +V++ L LI+++ P HG TNIMVYI +CSLLGS TV S Sbjct: 147 TTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSFTVPST 206 Query: 555 KALGIA 572 K +G+A Sbjct: 207 KGIGLA 212
>YG35_YEAST (P53273) Hypothetical 117.0 kDa protein in ASN2-PHB1 intergenic| region Length = 1036 Score = 35.0 bits (79), Expect = 0.19 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 8/68 (11%) Frame = -3 Query: 447 PPLLRSHMK--------EKLAQLQDPKLPLQNQYHAPVEHGVQL*SIRLHKEHNQVYQRC 292 PPL RS+M + L D KLP+ N+ H V HG S LH++ Q+ Sbjct: 43 PPLCRSYMSGFFTGGNSPMINNLSDSKLPISNKQHPKVIHG----SENLHRQTAQLSNEF 98 Query: 291 AVSPVEWN 268 S VE N Sbjct: 99 CSSSVEEN 106
>LAMC3_MOUSE (Q9R0B6) Laminin gamma-3 chain precursor (Laminin 12 gamma 3| subunit) Length = 1581 Score = 31.2 bits (69), Expect = 2.7 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 5/91 (5%) Frame = +2 Query: 245 NNQCCTCSFHSTGETAHLWYTWLCSLC-----SRIDHNCTPCSTGA*Y*FCKGSLGSCN* 409 N+ C C TG W C C S + C PC+ GSLG+C+ Sbjct: 406 NSGVCPCKPTVTG--------WKCDRCLPGFHSLSEGGCRPCACNV-----AGSLGTCDP 452 Query: 410 ASFSFICDRSSGGSLVPYIFCCPSTWTNKHH 502 S + C + GSL C P T+ + H Sbjct: 453 RSGNCPCKENVEGSLCDR--CRPGTFNLQPH 481
>POLG_EC23C (Q9YID8) Genome polyprotein [Contains: Coat protein VP0 (P1AB);| Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome-linked protein VPg (P3 Length = 2188 Score = 30.4 bits (67), Expect = 4.6 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Frame = +2 Query: 425 ICDRSSGGSL---VPYIFCCPSTWTNKHHGVHWSLFS----SRISHRYECKGSRNCIEVN 583 ICD S S +PY F STW K +G LF +R+++ C +CI Sbjct: 474 ICDIGSDNSFEITIPYTF---STWMRKTNGRPIGLFQVEVLNRLTYNSSCPNKVHCIVQG 530 Query: 584 ILGSE 598 LG++ Sbjct: 531 RLGND 535
>IE63_HHV6U (P52354) Transcriptional regulator IE63 homolog| Length = 515 Score = 30.4 bits (67), Expect = 4.6 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = -1 Query: 272 GMSKCSTDYYTECSKRSDKNSRSKCISSKISYFANNHRNHAYPPKWLH*VRIPSIT 105 G+ + DY+ + + R+ K S + S IS+FA N R P K L R+ +++ Sbjct: 5 GVKRSHHDYHRQTAFRTIKRSTHRQTSKFISHFAKNFRGKLAPLKQLDESRLDALS 60
>POLG_EC23W (O73556) Genome polyprotein [Contains: Coat protein VP0 (P1AB);| Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome-linked protein VPg (P3 Length = 2179 Score = 30.4 bits (67), Expect = 4.6 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Frame = +2 Query: 425 ICDRSSGGSL---VPYIFCCPSTWTNKHHGVHWSLFS----SRISHRYECKGSRNCIEVN 583 ICD S S +PY F STW K HG LF +R+++ Y CI Sbjct: 467 ICDIGSDNSFEITIPYSF---STWMRKTHGKPIGLFQIEVLNRLTYNYSSPNEVYCIVQG 523 Query: 584 ILGSE 598 +G + Sbjct: 524 KMGQD 528
>UL10_HCMVA (P16843) Hypothetical protein UL10| Length = 258 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 497 HHGVHWSLFSSRISHRYECKGSRNCIEVNILGSEPIILSSDLGF 628 H WS+ ++ I +RY S C+EV + +P+ L S G+ Sbjct: 11 HDLFRWSVMTAMIFYRY----SETCMEVTVRVGDPVTLGSGHGY 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,819,739 Number of Sequences: 219361 Number of extensions: 1718329 Number of successful extensions: 4998 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4829 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4988 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
