ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags32m11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013005O01, full insert sequence Length = 4034 Score = 670 bits (338), Expect = 0.0 Identities = 555/626 (88%), Gaps = 1/626 (0%) Strand = Plus / Plus Query: 29 gcctaccttattggtttcctctttaaaaatagtaaattgtatttggctgatgaagctcca 88 ||||| || |||||| ||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 2303 gcctatctgattggtctcctctttaaaaacagtaaattgtatttggctgatgaggctcca 2362 Query: 89 gatatgatgtctatcctaattactttgttgagcgatactgataacgctactgtactggct 148 ||||| ||||| | |||||||||||||||||| ||||| ||||| ||||||||| ||| Sbjct: 2363 gatattatgtccaccctaattactttgttgagtgataccgataaggctactgtatcagct 2422 Query: 149 gcttgggaagcattttcaagagttgttggctctgttccaaaggaacagctccctacacat 208 |||| |||||||||||| |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 2423 gctttggaagcattttcgcgagttgttagctctgttccaaaggaacagcttcctacacat 2482 Query: 209 ataaaattagtgcgtgacgctgtctctacagccagagataaagaacgtaggaggagaaag 268 |||||| |||| ||||| |||||||| || ||||| |||||||||||||| ||||||||| Sbjct: 2483 ataaaactagtacgtgatgctgtctccactgccagggataaagaacgtagaaggagaaag 2542 Query: 269 ggtgtgcctgttctcatacctggcttatgtcttcctaaagcactgcagccatttcttcct 328 ||||||||| ||||| | ||||||||||||||||| |||||||||||||| ||||||||| Sbjct: 2543 ggtgtgcctattctcgtccctggcttatgtcttccgaaagcactgcagccctttcttcct 2602 Query: 329 atatttcagcagggtttaattagtgggtcagccgagacaaaggagcaggcagcagaaggt 388 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 2603 atatttcagcagggtttaattagtggatcagccgagacaaaggaacaggcagcagaaggt 2662 Query: 389 ctgggagagttaattgatgttacaagcgagaaaacacttagggaagttgtcgtgccaatt 448 ||||| |||||||||||||||||||| |||||||| |||| ||| ||||| ||||| ||| Sbjct: 2663 ctgggggagttaattgatgttacaagtgagaaaactcttaaggaggttgttgtgccgatt 2722 Query: 449 acagggcctcttatacgcatcctgggagaccgatttccatggcaagttaagtcagctatc 508 ||||| |||||||| || || || ||||| |||||||| |||||||| |||||||||||| Sbjct: 2723 acaggtcctcttatccgtattcttggagatcgatttccgtggcaagtcaagtcagctatc 2782 Query: 509 ctatcaaccctgactattatcatcgcaaaaggtggtcttgcgcttaagcccttccttcca 568 |||||||| |||||||| ||||| | ||||| || ||||| |||||||| ||||||||| Sbjct: 2783 ctatcaactctgactatcatcatttctaaaggggggcttgcacttaagcctttccttcca 2842 Query: 569 caacttcagacaacgtttgttaaatgtctacaagacagcaacagatctgtccgcacaagg 628 ||||||||||| || ||||| || ||||| || || | ||| |||||||| || |||||| Sbjct: 2843 caacttcagactacatttgtcaagtgtctgcaggataacaatagatctgttcgaacaagg 2902 Query: 629 gcccgcatcagctcttggaaagctta 654 | | ||||| |||||||||||||||| Sbjct: 2903 g-ctgcatctgctcttggaaagctta 2927
>dbj|AK058251.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-C02, full insert sequence Length = 1343 Score = 176 bits (89), Expect = 6e-41 Identities = 201/237 (84%), Gaps = 1/237 (0%) Strand = Plus / Plus Query: 418 gaaaacacttagggaagttgtcgtgccaattacagggcctcttatacgcatcctgggaga 477 |||||| |||| ||| ||||| ||||| |||||||| |||||||| || || || ||||| Sbjct: 1 gaaaactcttaaggaggttgttgtgccgattacaggtcctcttatccgtattcttggaga 60 Query: 478 ccgatttccatggcaagttaagtcagctatcctatcaaccctgactattatcatcgcaaa 537 |||||||| |||||||| |||||||||||||||||||| |||||||| ||||| | || Sbjct: 61 tcgatttccgtggcaagtcaagtcagctatcctatcaactctgactatcatcatttctaa 120 Query: 538 aggtggtcttgcgcttaagcccttccttccacaacttcagacaacgtttgttaaatgtct 597 ||| || ||||| |||||||| |||||||||||||||||||| || ||||| || ||||| Sbjct: 121 aggggggcttgcacttaagcctttccttccacaacttcagactacatttgtcaagtgtct 180 Query: 598 acaagacagcaacagatctgtccgcacaagggcccgcatcagctcttggaaagctta 654 || || | ||| |||||||| || ||||||| | ||||| |||||||||||||||| Sbjct: 181 gcaggataacaatagatctgttcgaacaaggg-ctgcatctgctcttggaaagctta 236
>gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone OSJNBa0031O09, complete sequence Length = 161339 Score = 161 bits (81), Expect = 4e-36 Identities = 108/117 (92%) Strand = Plus / Plus Query: 338 cagggtttaattagtgggtcagccgagacaaaggagcaggcagcagaaggtctgggagag 397 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 13490 cagggtttaattagtggatcagccgagacaaaggaacaggcagcagaaggtctgggggag 13549 Query: 398 ttaattgatgttacaagcgagaaaacacttagggaagttgtcgtgccaattacaggg 454 ||||||||||||||||| |||||||| |||| ||| ||||| ||||| ||||||||| Sbjct: 13550 ttaattgatgttacaagtgagaaaactcttaaggaggttgttgtgccgattacaggg 13606 Score = 153 bits (77), Expect = 9e-34 Identities = 113/125 (90%) Strand = Plus / Plus Query: 145 ggctgcttgggaagcattttcaagagttgttggctctgttccaaaggaacagctccctac 204 |||||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||| Sbjct: 12948 ggctgctttggaagcattttcgcgagttgttagctctgttccaaaggaacagcttcctac 13007 Query: 205 acatataaaattagtgcgtgacgctgtctctacagccagagataaagaacgtaggaggag 264 |||||||||| |||| ||||| |||||||| || ||||| |||||||||||||| ||||| Sbjct: 13008 acatataaaactagtacgtgatgctgtctccactgccagggataaagaacgtagaaggag 13067 Query: 265 aaagg 269 ||||| Sbjct: 13068 aaagg 13072 Score = 147 bits (74), Expect = 5e-32 Identities = 104/114 (91%) Strand = Plus / Plus Query: 29 gcctaccttattggtttcctctttaaaaatagtaaattgtatttggctgatgaagctcca 88 ||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 12756 gcctatctgattggtttcctctttaaaaacagtaaattgtatttggctgatgaggctcca 12815 Query: 89 gatatgatgtctatcctaattactttgttgagcgatactgataacgctactgta 142 ||||| ||||| | |||||||||||||||||| ||||| ||||| ||||||||| Sbjct: 12816 gatattatgtccaccctaattactttgttgagtgataccgataaggctactgta 12869 Score = 125 bits (63), Expect = 2e-25 Identities = 123/143 (86%) Strand = Plus / Plus Query: 455 cctcttatacgcatcctgggagaccgatttccatggcaagttaagtcagctatcctatca 514 |||||||| || || || ||||| |||||||| |||||||| |||||||||||||||||| Sbjct: 15500 cctcttatccgtattcttggagatcgatttccgtggcaagtcaagtcagctatcctatca 15559 Query: 515 accctgactattatcatcgcaaaaggtggtcttgcgcttaagcccttccttccacaactt 574 || |||||||| ||||| | ||||| || ||||| |||||||| ||||||||||||||| Sbjct: 15560 actctgactatcatcatttctaaaggggggcttgcacttaagcctttccttccacaactt 15619 Query: 575 cagacaacgtttgttaaatgtct 597 ||||| || ||||| || ||||| Sbjct: 15620 cagactacatttgtcaagtgtct 15642 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 267 agggtgtgcctgttctcatacctggcttatgtcttcctaaagcactgcagccatttcttc 326 ||||||||||| ||||| | ||||||||||||||||| |||||||||||||| ||||||| Sbjct: 13252 agggtgtgcctattctcgtccctggcttatgtcttccgaaagcactgcagccctttcttc 13311 Query: 327 ctatatttcagcagg 341 ||||||||||||||| Sbjct: 13312 ctatatttcagcagg 13326 Score = 48.1 bits (24), Expect = 0.037 Identities = 43/48 (89%), Gaps = 1/48 (2%) Strand = Plus / Plus Query: 607 caacagatctgtccgcacaagggcccgcatcagctcttggaaagctta 654 |||||||||||| || |||||||| ||||| |||||||||||||||| Sbjct: 15727 caacagatctgttcgaacaagggct-gcatctgctcttggaaagctta 15773
>gb|AC146936.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1154F06 map near C10769, complete sequence Length = 194856 Score = 161 bits (81), Expect = 4e-36 Identities = 108/117 (92%) Strand = Plus / Minus Query: 338 cagggtttaattagtgggtcagccgagacaaaggagcaggcagcagaaggtctgggagag 397 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 165942 cagggtttaattagtggatcagccgagacaaaggaacaggcagcagaaggtctgggggag 165883 Query: 398 ttaattgatgttacaagcgagaaaacacttagggaagttgtcgtgccaattacaggg 454 ||||||||||||||||| |||||||| |||| ||| ||||| ||||| ||||||||| Sbjct: 165882 ttaattgatgttacaagtgagaaaactcttaaggaggttgttgtgccgattacaggg 165826 Score = 153 bits (77), Expect = 9e-34 Identities = 113/125 (90%) Strand = Plus / Minus Query: 145 ggctgcttgggaagcattttcaagagttgttggctctgttccaaaggaacagctccctac 204 |||||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||| Sbjct: 166484 ggctgctttggaagcattttcgcgagttgttagctctgttccaaaggaacagcttcctac 166425 Query: 205 acatataaaattagtgcgtgacgctgtctctacagccagagataaagaacgtaggaggag 264 |||||||||| |||| ||||| |||||||| || ||||| |||||||||||||| ||||| Sbjct: 166424 acatataaaactagtacgtgatgctgtctccactgccagggataaagaacgtagaaggag 166365 Query: 265 aaagg 269 ||||| Sbjct: 166364 aaagg 166360 Score = 147 bits (74), Expect = 5e-32 Identities = 104/114 (91%) Strand = Plus / Minus Query: 29 gcctaccttattggtttcctctttaaaaatagtaaattgtatttggctgatgaagctcca 88 ||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 166676 gcctatctgattggtttcctctttaaaaacagtaaattgtatttggctgatgaggctcca 166617 Query: 89 gatatgatgtctatcctaattactttgttgagcgatactgataacgctactgta 142 ||||| ||||| | |||||||||||||||||| ||||| ||||| ||||||||| Sbjct: 166616 gatattatgtccaccctaattactttgttgagtgataccgataaggctactgta 166563 Score = 125 bits (63), Expect = 2e-25 Identities = 123/143 (86%) Strand = Plus / Minus Query: 455 cctcttatacgcatcctgggagaccgatttccatggcaagttaagtcagctatcctatca 514 |||||||| || || || ||||| |||||||| |||||||| |||||||||||||||||| Sbjct: 163932 cctcttatccgtattcttggagatcgatttccgtggcaagtcaagtcagctatcctatca 163873 Query: 515 accctgactattatcatcgcaaaaggtggtcttgcgcttaagcccttccttccacaactt 574 || |||||||| ||||| | ||||| || ||||| |||||||| ||||||||||||||| Sbjct: 163872 actctgactatcatcatttctaaaggggggcttgcacttaagcctttccttccacaactt 163813 Query: 575 cagacaacgtttgttaaatgtct 597 ||||| || ||||| || ||||| Sbjct: 163812 cagactacatttgtcaagtgtct 163790 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Minus Query: 267 agggtgtgcctgttctcatacctggcttatgtcttcctaaagcactgcagccatttcttc 326 ||||||||||| ||||| | ||||||||||||||||| |||||||||||||| ||||||| Sbjct: 166180 agggtgtgcctattctcgtccctggcttatgtcttccgaaagcactgcagccctttcttc 166121 Query: 327 ctatatttcagcagg 341 ||||||||||||||| Sbjct: 166120 ctatatttcagcagg 166106 Score = 48.1 bits (24), Expect = 0.037 Identities = 43/48 (89%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 607 caacagatctgtccgcacaagggcccgcatcagctcttggaaagctta 654 |||||||||||| || |||||||| ||||| |||||||||||||||| Sbjct: 163705 caacagatctgttcgaacaagggct-gcatctgctcttggaaagctta 163659
>gb|AC147426.2| Oryza sativa chromosome 3 B1377B10 genomic sequence, complete sequence Length = 184366 Score = 161 bits (81), Expect = 4e-36 Identities = 108/117 (92%) Strand = Plus / Plus Query: 338 cagggtttaattagtgggtcagccgagacaaaggagcaggcagcagaaggtctgggagag 397 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 156644 cagggtttaattagtggatcagccgagacaaaggaacaggcagcagaaggtctgggggag 156703 Query: 398 ttaattgatgttacaagcgagaaaacacttagggaagttgtcgtgccaattacaggg 454 ||||||||||||||||| |||||||| |||| ||| ||||| ||||| ||||||||| Sbjct: 156704 ttaattgatgttacaagtgagaaaactcttaaggaggttgttgtgccgattacaggg 156760 Score = 153 bits (77), Expect = 9e-34 Identities = 113/125 (90%) Strand = Plus / Plus Query: 145 ggctgcttgggaagcattttcaagagttgttggctctgttccaaaggaacagctccctac 204 |||||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||| Sbjct: 156102 ggctgctttggaagcattttcgcgagttgttagctctgttccaaaggaacagcttcctac 156161 Query: 205 acatataaaattagtgcgtgacgctgtctctacagccagagataaagaacgtaggaggag 264 |||||||||| |||| ||||| |||||||| || ||||| |||||||||||||| ||||| Sbjct: 156162 acatataaaactagtacgtgatgctgtctccactgccagggataaagaacgtagaaggag 156221 Query: 265 aaagg 269 ||||| Sbjct: 156222 aaagg 156226 Score = 147 bits (74), Expect = 5e-32 Identities = 104/114 (91%) Strand = Plus / Plus Query: 29 gcctaccttattggtttcctctttaaaaatagtaaattgtatttggctgatgaagctcca 88 ||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 155910 gcctatctgattggtttcctctttaaaaacagtaaattgtatttggctgatgaggctcca 155969 Query: 89 gatatgatgtctatcctaattactttgttgagcgatactgataacgctactgta 142 ||||| ||||| | |||||||||||||||||| ||||| ||||| ||||||||| Sbjct: 155970 gatattatgtccaccctaattactttgttgagtgataccgataaggctactgta 156023 Score = 125 bits (63), Expect = 2e-25 Identities = 123/143 (86%) Strand = Plus / Plus Query: 455 cctcttatacgcatcctgggagaccgatttccatggcaagttaagtcagctatcctatca 514 |||||||| || || || ||||| |||||||| |||||||| |||||||||||||||||| Sbjct: 158654 cctcttatccgtattcttggagatcgatttccgtggcaagtcaagtcagctatcctatca 158713 Query: 515 accctgactattatcatcgcaaaaggtggtcttgcgcttaagcccttccttccacaactt 574 || |||||||| ||||| | ||||| || ||||| |||||||| ||||||||||||||| Sbjct: 158714 actctgactatcatcatttctaaaggggggcttgcacttaagcctttccttccacaactt 158773 Query: 575 cagacaacgtttgttaaatgtct 597 ||||| || ||||| || ||||| Sbjct: 158774 cagactacatttgtcaagtgtct 158796 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 267 agggtgtgcctgttctcatacctggcttatgtcttcctaaagcactgcagccatttcttc 326 ||||||||||| ||||| | ||||||||||||||||| |||||||||||||| ||||||| Sbjct: 156406 agggtgtgcctattctcgtccctggcttatgtcttccgaaagcactgcagccctttcttc 156465 Query: 327 ctatatttcagcagg 341 ||||||||||||||| Sbjct: 156466 ctatatttcagcagg 156480 Score = 48.1 bits (24), Expect = 0.037 Identities = 43/48 (89%), Gaps = 1/48 (2%) Strand = Plus / Plus Query: 607 caacagatctgtccgcacaagggcccgcatcagctcttggaaagctta 654 |||||||||||| || |||||||| ||||| |||||||||||||||| Sbjct: 158881 caacagatctgttcgaacaagggct-gcatctgctcttggaaagctta 158927
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 161 bits (81), Expect = 4e-36 Identities = 108/117 (92%) Strand = Plus / Plus Query: 338 cagggtttaattagtgggtcagccgagacaaaggagcaggcagcagaaggtctgggagag 397 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 28973349 cagggtttaattagtggatcagccgagacaaaggaacaggcagcagaaggtctgggggag 28973408 Query: 398 ttaattgatgttacaagcgagaaaacacttagggaagttgtcgtgccaattacaggg 454 ||||||||||||||||| |||||||| |||| ||| ||||| ||||| ||||||||| Sbjct: 28973409 ttaattgatgttacaagtgagaaaactcttaaggaggttgttgtgccgattacaggg 28973465 Score = 153 bits (77), Expect = 9e-34 Identities = 113/125 (90%) Strand = Plus / Plus Query: 145 ggctgcttgggaagcattttcaagagttgttggctctgttccaaaggaacagctccctac 204 |||||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||| Sbjct: 28972807 ggctgctttggaagcattttcgcgagttgttagctctgttccaaaggaacagcttcctac 28972866 Query: 205 acatataaaattagtgcgtgacgctgtctctacagccagagataaagaacgtaggaggag 264 |||||||||| |||| ||||| |||||||| || ||||| |||||||||||||| ||||| Sbjct: 28972867 acatataaaactagtacgtgatgctgtctccactgccagggataaagaacgtagaaggag 28972926 Query: 265 aaagg 269 ||||| Sbjct: 28972927 aaagg 28972931 Score = 147 bits (74), Expect = 5e-32 Identities = 104/114 (91%) Strand = Plus / Plus Query: 29 gcctaccttattggtttcctctttaaaaatagtaaattgtatttggctgatgaagctcca 88 ||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 28972615 gcctatctgattggtttcctctttaaaaacagtaaattgtatttggctgatgaggctcca 28972674 Query: 89 gatatgatgtctatcctaattactttgttgagcgatactgataacgctactgta 142 ||||| ||||| | |||||||||||||||||| ||||| ||||| ||||||||| Sbjct: 28972675 gatattatgtccaccctaattactttgttgagtgataccgataaggctactgta 28972728 Score = 125 bits (63), Expect = 2e-25 Identities = 123/143 (86%) Strand = Plus / Plus Query: 455 cctcttatacgcatcctgggagaccgatttccatggcaagttaagtcagctatcctatca 514 |||||||| || || || ||||| |||||||| |||||||| |||||||||||||||||| Sbjct: 28975359 cctcttatccgtattcttggagatcgatttccgtggcaagtcaagtcagctatcctatca 28975418 Query: 515 accctgactattatcatcgcaaaaggtggtcttgcgcttaagcccttccttccacaactt 574 || |||||||| ||||| | ||||| || ||||| |||||||| ||||||||||||||| Sbjct: 28975419 actctgactatcatcatttctaaaggggggcttgcacttaagcctttccttccacaactt 28975478 Query: 575 cagacaacgtttgttaaatgtct 597 ||||| || ||||| || ||||| Sbjct: 28975479 cagactacatttgtcaagtgtct 28975501 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 267 agggtgtgcctgttctcatacctggcttatgtcttcctaaagcactgcagccatttcttc 326 ||||||||||| ||||| | ||||||||||||||||| |||||||||||||| ||||||| Sbjct: 28973111 agggtgtgcctattctcgtccctggcttatgtcttccgaaagcactgcagccctttcttc 28973170 Query: 327 ctatatttcagcagg 341 ||||||||||||||| Sbjct: 28973171 ctatatttcagcagg 28973185 Score = 48.1 bits (24), Expect = 0.037 Identities = 43/48 (89%), Gaps = 1/48 (2%) Strand = Plus / Plus Query: 607 caacagatctgtccgcacaagggcccgcatcagctcttggaaagctta 654 |||||||||||| || |||||||| ||||| |||||||||||||||| Sbjct: 28975586 caacagatctgttcgaacaagggct-gcatctgctcttggaaagctta 28975632
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 161 bits (81), Expect = 4e-36 Identities = 108/117 (92%) Strand = Plus / Plus Query: 338 cagggtttaattagtgggtcagccgagacaaaggagcaggcagcagaaggtctgggagag 397 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 29064771 cagggtttaattagtggatcagccgagacaaaggaacaggcagcagaaggtctgggggag 29064830 Query: 398 ttaattgatgttacaagcgagaaaacacttagggaagttgtcgtgccaattacaggg 454 ||||||||||||||||| |||||||| |||| ||| ||||| ||||| ||||||||| Sbjct: 29064831 ttaattgatgttacaagtgagaaaactcttaaggaggttgttgtgccgattacaggg 29064887 Score = 153 bits (77), Expect = 9e-34 Identities = 113/125 (90%) Strand = Plus / Plus Query: 145 ggctgcttgggaagcattttcaagagttgttggctctgttccaaaggaacagctccctac 204 |||||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||| Sbjct: 29064229 ggctgctttggaagcattttcgcgagttgttagctctgttccaaaggaacagcttcctac 29064288 Query: 205 acatataaaattagtgcgtgacgctgtctctacagccagagataaagaacgtaggaggag 264 |||||||||| |||| ||||| |||||||| || ||||| |||||||||||||| ||||| Sbjct: 29064289 acatataaaactagtacgtgatgctgtctccactgccagggataaagaacgtagaaggag 29064348 Query: 265 aaagg 269 ||||| Sbjct: 29064349 aaagg 29064353 Score = 147 bits (74), Expect = 5e-32 Identities = 104/114 (91%) Strand = Plus / Plus Query: 29 gcctaccttattggtttcctctttaaaaatagtaaattgtatttggctgatgaagctcca 88 ||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 29064037 gcctatctgattggtttcctctttaaaaacagtaaattgtatttggctgatgaggctcca 29064096 Query: 89 gatatgatgtctatcctaattactttgttgagcgatactgataacgctactgta 142 ||||| ||||| | |||||||||||||||||| ||||| ||||| ||||||||| Sbjct: 29064097 gatattatgtccaccctaattactttgttgagtgataccgataaggctactgta 29064150 Score = 125 bits (63), Expect = 2e-25 Identities = 123/143 (86%) Strand = Plus / Plus Query: 455 cctcttatacgcatcctgggagaccgatttccatggcaagttaagtcagctatcctatca 514 |||||||| || || || ||||| |||||||| |||||||| |||||||||||||||||| Sbjct: 29066781 cctcttatccgtattcttggagatcgatttccgtggcaagtcaagtcagctatcctatca 29066840 Query: 515 accctgactattatcatcgcaaaaggtggtcttgcgcttaagcccttccttccacaactt 574 || |||||||| ||||| | ||||| || ||||| |||||||| ||||||||||||||| Sbjct: 29066841 actctgactatcatcatttctaaaggggggcttgcacttaagcctttccttccacaactt 29066900 Query: 575 cagacaacgtttgttaaatgtct 597 ||||| || ||||| || ||||| Sbjct: 29066901 cagactacatttgtcaagtgtct 29066923 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 267 agggtgtgcctgttctcatacctggcttatgtcttcctaaagcactgcagccatttcttc 326 ||||||||||| ||||| | ||||||||||||||||| |||||||||||||| ||||||| Sbjct: 29064533 agggtgtgcctattctcgtccctggcttatgtcttccgaaagcactgcagccctttcttc 29064592 Query: 327 ctatatttcagcagg 341 ||||||||||||||| Sbjct: 29064593 ctatatttcagcagg 29064607 Score = 48.1 bits (24), Expect = 0.037 Identities = 43/48 (89%), Gaps = 1/48 (2%) Strand = Plus / Plus Query: 607 caacagatctgtccgcacaagggcccgcatcagctcttggaaagctta 654 |||||||||||| || |||||||| ||||| |||||||||||||||| Sbjct: 29067008 caacagatctgttcgaacaagggct-gcatctgctcttggaaagctta 29067054
>ref|NM_105153.3| Arabidopsis thaliana unknown protein AT1G64790 mRNA, complete cds Length = 7618 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 449 acagggcctcttatacgcatcctgggagaccgatttccatggcaagt 495 |||||||||||||| || ||| | |||||||| |||||||||||||| Sbjct: 6253 acagggcctcttattcgaatcattggagaccggtttccatggcaagt 6299
>emb|CT485992.1| S.lycopersicum DNA sequence from clone LE_HBa-31H5 on chromosome 4, complete sequence Length = 164164 Score = 48.1 bits (24), Expect = 0.037 Identities = 39/44 (88%) Strand = Plus / Minus Query: 385 aggtctgggagagttaattgatgttacaagcgagaaaacactta 428 |||||| || ||||||||||| || ||| ||||||||||||||| Sbjct: 80809 aggtcttggggagttaattgaagtgacaggcgagaaaacactta 80766
>gb|AC006193.3|AC006193 Arabidopsis thaliana chromosome I BAC F13O11 genomic sequence, complete sequence Length = 118335 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Minus Query: 453 ggcctcttatacgcatcctgggagaccgatttccatggcaagt 495 |||||||||| || ||| | |||||||| |||||||||||||| Sbjct: 31033 ggcctcttattcgaatcattggagaccggtttccatggcaagt 30991
>gb|AC104481.3| Sus scrofa clone RP44-361I24, complete sequence Length = 86524 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 551 cttaagcccttccttccacaa 571 ||||||||||||||||||||| Sbjct: 161 cttaagcccttccttccacaa 181
>gb|AC104479.3| Sus scrofa clone RP44-321O22, complete sequence Length = 117233 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 551 cttaagcccttccttccacaa 571 ||||||||||||||||||||| Sbjct: 78626 cttaagcccttccttccacaa 78646
>emb|AL359763.9| Human DNA sequence from clone RP11-169O17 on chromosome 13 Contains a cytochrome c pseudogene, a novel gene, the ADPRTL1 gene for ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like protein 1 , part of a TPTE and PTEN homologous inositol lipid phosphatase (TPIP) pseudogene and four CpG islands, complete sequence Length = 190765 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 taaaaatagtaaattgtattt 72 ||||||||||||||||||||| Sbjct: 83766 taaaaatagtaaattgtattt 83786
>emb|AL035661.16|HS568C11 Human DNA sequence from clone RP4-568C11 on chromosome 20p11.21-11.23 Contains the CST7 gene for cystatin F (leukocystatin)(cystatin 7, leukocystatin, cystatin-like metastasis-associated protein, CMAP), the gene C20ORF3 for chromosome 20 open reading frame 3, the 3' end of the ACAS2L gene for acetyl-Coenzyme A synthetase (AMP forming)-like and a CpG island, complete sequence Length = 103681 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 256 taggaggagaaagggtgtgcctgtt 280 ||||||||||||||||| ||||||| Sbjct: 100693 taggaggagaaagggtgggcctgtt 100669
>gb|AC104018.3| Homo sapiens chromosome 8, clone RP11-354A14, complete sequence Length = 186256 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 aagcattttcaagagttgttg 176 ||||||||||||||||||||| Sbjct: 127938 aagcattttcaagagttgttg 127918
>emb|BX511219.7| Zebrafish DNA sequence from clone DKEYP-93A3, complete sequence Length = 201881 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 taaaaatagtaaattgtattt 72 ||||||||||||||||||||| Sbjct: 192702 taaaaatagtaaattgtattt 192682 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 taaaaatagtaaattgtattt 72 ||||||||||||||||||||| Sbjct: 145148 taaaaatagtaaattgtattt 145128
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 aaaaatagtaaattgtatttg 73 ||||||||||||||||||||| Sbjct: 33803538 aaaaatagtaaattgtatttg 33803558
>dbj|BS000097.1| Pan troglodytes chromosome 22 clone:RP43-016D07, map 22, complete sequences Length = 184809 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 554 aagcccttccttccacaactt 574 ||||||||||||||||||||| Sbjct: 19255 aagcccttccttccacaactt 19275
>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0700F06 Length = 139277 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 aaaaatagtaaattgtatttg 73 ||||||||||||||||||||| Sbjct: 134405 aaaaatagtaaattgtatttg 134425
>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_H09 Length = 114721 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 aaaaatagtaaattgtatttg 73 ||||||||||||||||||||| Sbjct: 20116 aaaaatagtaaattgtatttg 20136
>gb|AC109244.11| Mus musculus chromosome 15, clone RP23-459E13, complete sequence Length = 183400 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ttattggtttcctctttaaa 55 |||||||||||||||||||| Sbjct: 56107 ttattggtttcctctttaaa 56126
>gb|AF146793.2| Mus musculus Neuromedin U precursor (Nmu) gene, partial cds; PDCL2 (Pdcl2) gene, partial cds; CLOCK (Clock) gene, complete cds; TPARDL (Tpardl) gene, complete cds; and SRD5A2L (Srd5a2l) gene, complete cds Length = 204618 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 tggctctgttccaaaggaac 194 |||||||||||||||||||| Sbjct: 145458 tggctctgttccaaaggaac 145477
>gb|AC147239.2| Mus musculus BAC clone RP23-386C10 from chromosome 5, complete sequence Length = 217470 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 tggctctgttccaaaggaac 194 |||||||||||||||||||| Sbjct: 137105 tggctctgttccaaaggaac 137124
>gb|AC125448.16| Mus musculus chromosome 10, clone RP23-122D10, complete sequence Length = 188948 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 cttattggtttcctctttaa 54 |||||||||||||||||||| Sbjct: 90224 cttattggtttcctctttaa 90205
>gb|AC144848.6| Mus musculus chromosome 12, clone RP24-277O16, complete sequence Length = 174668 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ccatttcttcctatatttca 336 |||||||||||||||||||| Sbjct: 3072 ccatttcttcctatatttca 3091
>gb|AC124468.3| Mus musculus BAC clone RP24-165F16 from chromosome 5, complete sequence Length = 169280 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 tggctctgttccaaaggaac 194 |||||||||||||||||||| Sbjct: 168719 tggctctgttccaaaggaac 168738
>ref|XM_390050.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG09874.1) partial mRNA Length = 8595 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 554 aagcccttccttccacaacttcag 577 |||||||||||||| ||||||||| Sbjct: 6868 aagcccttccttccccaacttcag 6891
>gb|AC140025.7| Medicago truncatula clone mth2-11i16, complete sequence Length = 130592 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 tctgggagagttaattgatg 407 |||||||||||||||||||| Sbjct: 82898 tctgggagagttaattgatg 82879
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ccatttcttcctatatttca 336 |||||||||||||||||||| Sbjct: 138523 ccatttcttcctatatttca 138542
>emb|AL604065.7| Mouse DNA sequence from clone RP23-20M18 on chromosome 11 Contains the genes for olfactory receptors MOR255-4, -5, -6 and MOR125-1, the Olfr43 gene for olfactory receptor 43, six olfactory receptor pseudogenes, the Olfr59 gene for olfactory receptor 59, a glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene, the gene for a novel olfactory receptor, the 3' end of the gene for a novel protein similar to human RAP1 GTPase activating protein 1 RAP1GA1 and two CpG islands, complete sequence Length = 254938 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ctgcttgggaagcattttca 166 |||||||||||||||||||| Sbjct: 48447 ctgcttgggaagcattttca 48428
>gb|AC087179.2| Gallus gallus clone WAG-55C14, complete sequence Length = 55589 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 agcaggcagcagaaggtctg 391 |||||||||||||||||||| Sbjct: 5576 agcaggcagcagaaggtctg 5557
>gb|AC091725.2| Gallus gallus clone WAG-105M15, complete sequence Length = 98793 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 agcaggcagcagaaggtctg 391 |||||||||||||||||||| Sbjct: 67754 agcaggcagcagaaggtctg 67735
>gb|AC022389.9| Homo sapiens chromosome 10 clone RP11-124L5, complete sequence Length = 198481 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 aagcccttccttccacaact 573 |||||||||||||||||||| Sbjct: 25659 aagcccttccttccacaact 25640
>emb|AL954696.17| Zebrafish DNA sequence from clone CH211-234K4, complete sequence Length = 149858 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 tggtttcctctttaaaaata 59 |||||||||||||||||||| Sbjct: 82766 tggtttcctctttaaaaata 82785
>gb|AC139319.6| Mus musculus BAC clone RP24-439B16 from chromosome 12, complete sequence Length = 189003 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ccatttcttcctatatttca 336 |||||||||||||||||||| Sbjct: 137041 ccatttcttcctatatttca 137060
>gb|AC068831.17| Homo sapiens chromosome 15, clone RP11-2O19, complete sequence Length = 136975 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 tgtctctacagccagagataaaga 252 ||||||||||||||||| |||||| Sbjct: 63176 tgtctctacagccagagctaaaga 63199
>gb|AC022077.20| Homo sapiens 3 BAC RP11-34I16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158176 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 agacaaaggagcaggcagca 382 |||||||||||||||||||| Sbjct: 81058 agacaaaggagcaggcagca 81039
>dbj|BS000011.1| Pan troglodytes chromosome 22 clone:RP43-017I17, map 22, complete sequences Length = 191345 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 tttaaaaatagtaaattgtatttg 73 ||||||||||||||| |||||||| Sbjct: 185512 tttaaaaatagtaaaatgtatttg 185489
>dbj|AP001691.1| Homo sapiens genomic DNA, chromosome 21q, section 35/105 Length = 340000 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 554 aagcccttccttccacaact 573 |||||||||||||||||||| Sbjct: 63382 aagcccttccttccacaact 63401
>gb|AC102009.20| Mus musculus chromosome 10, clone RP24-512D20, complete sequence Length = 172721 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 cttattggtttcctctttaa 54 |||||||||||||||||||| Sbjct: 147936 cttattggtttcctctttaa 147917
>emb|AL929379.14| Zebrafish DNA sequence from clone CH211-156H6, complete sequence Length = 167232 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 tggtttcctctttaaaaata 59 |||||||||||||||||||| Sbjct: 53559 tggtttcctctttaaaaata 53578
>gb|AC159010.2| Gallus gallus BAC clone CH261-115H16 from chromosome unknown, complete sequence Length = 209348 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 agcaggcagcagaaggtctg 391 |||||||||||||||||||| Sbjct: 109622 agcaggcagcagaaggtctg 109641
>dbj|AP000964.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B838J12, LL56-APP region, complete sequence Length = 95595 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 554 aagcccttccttccacaact 573 |||||||||||||||||||| Sbjct: 60294 aagcccttccttccacaact 60313 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,193,118 Number of Sequences: 3902068 Number of extensions: 6193118 Number of successful extensions: 115470 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115238 Number of HSP's gapped (non-prelim): 225 length of query: 654 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 631 effective length of database: 17,143,297,704 effective search space: 10817420851224 effective search space used: 10817420851224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
