ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags32m05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF031231.1|AF031231 Triticum aestivum S222 (S222) mRNA, complete cds Length = 1748 Score = 955 bits (482), Expect = 0.0 Identities = 576/606 (95%), Gaps = 1/606 (0%) Strand = Plus / Plus Query: 11 agtcgtggatgatgct-ataaggccgacttagaaatttatgctgctgattttgccaacga 69 |||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 136 agtcgtggatgatgctcataaggcaggcttagaaatttatgctgctgattttgccaacga 195 Query: 70 ctttgcgctcagctacaactacagctatgatccgttagcagaataccttcgcttcatcga 129 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 196 ctttgcactcagctacaactacagctatgatccgttagcagaatatcttcgcttcatcga 255 Query: 130 taatggcgccttctgtgttgatggtctcttgactgatttccctatcactccattagaggc 189 ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 256 caatggtgccttctgtgttgatggtctcttgactgatttccctatcactccgttagaggc 315 Query: 190 catcggttgctttactaacctgaacaataccaaggcagatcatggggcacctctagttat 249 |||||| ||||| | |||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 316 catcggctgcttcagtaacctgaacaacaccaaggcagatcatggggcacctctagttat 375 Query: 250 ctcccacaatggtgctagtggcgaccatcctgactgcactgacctagcttatcagaaggc 309 ||||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||| Sbjct: 376 ctcccacaatggtgctagtggtgactaccctgactgcactgacctagcttatcaaaaggc 435 Query: 310 agttgctgatggtgcagatgtcattgactgtgctgttcaagtgacaaaagatggcatacc 369 ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 436 agttgttgatggtgcagatgtcattgactgtgacgttcaagtgacaaaagatggcatacc 495 Query: 370 aatatgcatgagttccattgacctaatggatgtcactactgtcgcatcctcacaattttc 429 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 496 aatatgcatgagttccattgacctaatggatgtcactactgttgcatcctcacaatttgc 555 Query: 430 ttctcaagcgggtgtcataaatgacattaaggctgttgctggagtctataccttcaacct 489 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 556 ttctcaagcgggtgtcataagtgacattaaggctgttgctggagtctataccttcaacct 615 Query: 490 cacttgggaggatattgcaaacaacctgaagcctatgatatcaaacccatttggcaagtc 549 |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| || Sbjct: 616 cacttgggaggacattgccaacaacctgaagcctatgatatcaaacccatttggccagat 675 Query: 550 taccctatcaagaaatcccagaagcaggaacgcaggaaaattcatgagattatcagactt 609 || |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct: 676 tagcctatcaagaaatcccagaaacaggaacgccggaaaattcatgagattatcagactt 735 Query: 610 cttggc 615 |||||| Sbjct: 736 cttggc 741
>ref|XM_466452.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2783 Score = 444 bits (224), Expect = e-121 Identities = 431/500 (86%) Strand = Plus / Plus Query: 39 tagaaatttatgctgctgattttgccaacgactttgcgctcagctacaactacagctatg 98 ||||| ||||||| ||||||||||| || |||||| ||||||||||||||||||||||| Sbjct: 1120 tagaagtttatgccgctgattttgcaaatgactttttgctcagctacaactacagctatg 1179 Query: 99 atccgttagcagaataccttcgcttcatcgataatggcgccttctgtgttgatggtctct 158 |||| ||| ||||||| ||| |||||| |||||||| ||||||| |||||| ||| | | Sbjct: 1180 atccattaacagaatatcttaacttcattgataatggtgccttctctgttgacggtgtat 1239 Query: 159 tgactgatttccctatcactccattagaggccatcggttgctttactaacctgaacaata 218 |||||||||||||||| || || | ||||||||| |||||||||| |||||| ||||| | Sbjct: 1240 tgactgatttccctattaccccttcagaggccattggttgctttagtaacctcaacaaca 1299 Query: 219 ccaaggcagatcatggggcacctctagttatctcccacaatggtgctagtggcgaccatc 278 |||| |||| ||| | |||||| | ||||||||||||||||||||||| ||| | | Sbjct: 1300 gcaagacagacaatgcgaaacctctcatcatctcccacaatggtgctagtggtgactacc 1359 Query: 279 ctgactgcactgacctagcttatcagaaggcagttgctgatggtgcagatgtcattgact 338 | || |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| Sbjct: 1360 cagattgcactgacctagcttatcaaaaggcagttactgatggtgcagatgtcatcgact 1419 Query: 339 gtgctgttcaagtgacaaaagatggcataccaatatgcatgagttccattgacctaatgg 398 || | || ||||| || |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1420 gtcccgtacaagtaaccaaagatggcatacctatatgcatgagttccattgacctaatgg 1479 Query: 399 atgtcactactgtcgcatcctcacaattttcttctcaagcgggtgtcataaatgacatta 458 ||||||||||||| || | |||||||||||||||||| || ||||||||| || || | Sbjct: 1480 atgtcactactgtttcaacgtcacaattttcttctcaaacgactgtcataaaagatatca 1539 Query: 459 aggctgttgctggagtctataccttcaacctcacttgggaggatattgcaaacaacctga 518 || || ||||||||||||| ||||||||||||| ||||| |||||||| || ||||||| Sbjct: 1540 agaatggtgctggagtctattccttcaacctcacatgggatgatattgcgaagaacctga 1599 Query: 519 agcctatgatatcaaaccca 538 |||| | ||||||||||||| Sbjct: 1600 agcccaagatatcaaaccca 1619 Score = 48.1 bits (24), Expect = 0.034 Identities = 48/56 (85%) Strand = Plus / Plus Query: 560 agaaatcccagaagcaggaacgcaggaaaattcatgagattatcagacttcttggc 615 |||||||| |||| || ||| ||||||| ||||||||| |||| ||||||||||| Sbjct: 1641 agaaatcctagaaacaagaatgcaggaagtttcatgagactatcggacttcttggc 1696
>ref|XM_506842.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0046O12.21 mRNA Length = 2827 Score = 444 bits (224), Expect = e-121 Identities = 431/500 (86%) Strand = Plus / Plus Query: 39 tagaaatttatgctgctgattttgccaacgactttgcgctcagctacaactacagctatg 98 ||||| ||||||| ||||||||||| || |||||| ||||||||||||||||||||||| Sbjct: 1132 tagaagtttatgccgctgattttgcaaatgactttttgctcagctacaactacagctatg 1191 Query: 99 atccgttagcagaataccttcgcttcatcgataatggcgccttctgtgttgatggtctct 158 |||| ||| ||||||| ||| |||||| |||||||| ||||||| |||||| ||| | | Sbjct: 1192 atccattaacagaatatcttaacttcattgataatggtgccttctctgttgacggtgtat 1251 Query: 159 tgactgatttccctatcactccattagaggccatcggttgctttactaacctgaacaata 218 |||||||||||||||| || || | ||||||||| |||||||||| |||||| ||||| | Sbjct: 1252 tgactgatttccctattaccccttcagaggccattggttgctttagtaacctcaacaaca 1311 Query: 219 ccaaggcagatcatggggcacctctagttatctcccacaatggtgctagtggcgaccatc 278 |||| |||| ||| | |||||| | ||||||||||||||||||||||| ||| | | Sbjct: 1312 gcaagacagacaatgcgaaacctctcatcatctcccacaatggtgctagtggtgactacc 1371 Query: 279 ctgactgcactgacctagcttatcagaaggcagttgctgatggtgcagatgtcattgact 338 | || |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| Sbjct: 1372 cagattgcactgacctagcttatcaaaaggcagttactgatggtgcagatgtcatcgact 1431 Query: 339 gtgctgttcaagtgacaaaagatggcataccaatatgcatgagttccattgacctaatgg 398 || | || ||||| || |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1432 gtcccgtacaagtaaccaaagatggcatacctatatgcatgagttccattgacctaatgg 1491 Query: 399 atgtcactactgtcgcatcctcacaattttcttctcaagcgggtgtcataaatgacatta 458 ||||||||||||| || | |||||||||||||||||| || ||||||||| || || | Sbjct: 1492 atgtcactactgtttcaacgtcacaattttcttctcaaacgactgtcataaaagatatca 1551 Query: 459 aggctgttgctggagtctataccttcaacctcacttgggaggatattgcaaacaacctga 518 || || ||||||||||||| ||||||||||||| ||||| |||||||| || ||||||| Sbjct: 1552 agaatggtgctggagtctattccttcaacctcacatgggatgatattgcgaagaacctga 1611 Query: 519 agcctatgatatcaaaccca 538 |||| | ||||||||||||| Sbjct: 1612 agcccaagatatcaaaccca 1631 Score = 48.1 bits (24), Expect = 0.034 Identities = 48/56 (85%) Strand = Plus / Plus Query: 560 agaaatcccagaagcaggaacgcaggaaaattcatgagattatcagacttcttggc 615 |||||||| |||| || ||| ||||||| ||||||||| |||| ||||||||||| Sbjct: 1653 agaaatcctagaaacaagaatgcaggaagtttcatgagactatcggacttcttggc 1708
>dbj|AK100542.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102L08, full insert sequence Length = 2782 Score = 444 bits (224), Expect = e-121 Identities = 431/500 (86%) Strand = Plus / Plus Query: 39 tagaaatttatgctgctgattttgccaacgactttgcgctcagctacaactacagctatg 98 ||||| ||||||| ||||||||||| || |||||| ||||||||||||||||||||||| Sbjct: 1120 tagaagtttatgccgctgattttgcaaatgactttttgctcagctacaactacagctatg 1179 Query: 99 atccgttagcagaataccttcgcttcatcgataatggcgccttctgtgttgatggtctct 158 |||| ||| ||||||| ||| |||||| |||||||| ||||||| |||||| ||| | | Sbjct: 1180 atccattaacagaatatcttaacttcattgataatggtgccttctctgttgacggtgtat 1239 Query: 159 tgactgatttccctatcactccattagaggccatcggttgctttactaacctgaacaata 218 |||||||||||||||| || || | ||||||||| |||||||||| |||||| ||||| | Sbjct: 1240 tgactgatttccctattaccccttcagaggccattggttgctttagtaacctcaacaaca 1299 Query: 219 ccaaggcagatcatggggcacctctagttatctcccacaatggtgctagtggcgaccatc 278 |||| |||| ||| | |||||| | ||||||||||||||||||||||| ||| | | Sbjct: 1300 gcaagacagacaatgcgaaacctctcatcatctcccacaatggtgctagtggtgactacc 1359 Query: 279 ctgactgcactgacctagcttatcagaaggcagttgctgatggtgcagatgtcattgact 338 | || |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| Sbjct: 1360 cagattgcactgacctagcttatcaaaaggcagttactgatggtgcagatgtcatcgact 1419 Query: 339 gtgctgttcaagtgacaaaagatggcataccaatatgcatgagttccattgacctaatgg 398 || | || ||||| || |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1420 gtcccgtacaagtaaccaaagatggcatacctatatgcatgagttccattgacctaatgg 1479 Query: 399 atgtcactactgtcgcatcctcacaattttcttctcaagcgggtgtcataaatgacatta 458 ||||||||||||| || | |||||||||||||||||| || ||||||||| || || | Sbjct: 1480 atgtcactactgtttcaacgtcacaattttcttctcaaacgactgtcataaaagatatca 1539 Query: 459 aggctgttgctggagtctataccttcaacctcacttgggaggatattgcaaacaacctga 518 || || ||||||||||||| ||||||||||||| ||||| |||||||| || ||||||| Sbjct: 1540 agaatggtgctggagtctattccttcaacctcacatgggatgatattgcgaagaacctga 1599 Query: 519 agcctatgatatcaaaccca 538 |||| | ||||||||||||| Sbjct: 1600 agcccaagatatcaaaccca 1619
>dbj|AK100170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025E23, full insert sequence Length = 2824 Score = 428 bits (216), Expect = e-117 Identities = 430/500 (86%), Gaps = 1/500 (0%) Strand = Plus / Plus Query: 39 tagaaatttatgctgctgattttgccaacgactttgcgctcagctacaactacagctatg 98 ||||| ||||||| ||||||||||| || |||||| ||||||||||||||||||||||| Sbjct: 1130 tagaagtttatgccgctgattttgcaaatgactttttgctcagctacaactacagctatg 1189 Query: 99 atccgttagcagaataccttcgcttcatcgataatggcgccttctgtgttgatggtctct 158 |||| ||| ||||||| ||| |||||| |||||||| ||||||| |||||| | | | | Sbjct: 1190 atccattaacagaatatcttaacttcattgataatggtgccttctctgttgacg-tgtat 1248 Query: 159 tgactgatttccctatcactccattagaggccatcggttgctttactaacctgaacaata 218 |||||||||||||||| || || | ||||||||| |||||||||| |||||| ||||| | Sbjct: 1249 tgactgatttccctattaccccttcagaggccattggttgctttagtaacctcaacaaca 1308 Query: 219 ccaaggcagatcatggggcacctctagttatctcccacaatggtgctagtggcgaccatc 278 |||| |||| ||| | |||||| | ||||||||||||||||||||||| ||| | | Sbjct: 1309 gcaagacagacaatgcgaaacctctcatcatctcccacaatggtgctagtggtgactacc 1368 Query: 279 ctgactgcactgacctagcttatcagaaggcagttgctgatggtgcagatgtcattgact 338 | || |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| Sbjct: 1369 cagattgcactgacctagcttatcaaaaggcagttactgatggtgcagatgtcatcgact 1428 Query: 339 gtgctgttcaagtgacaaaagatggcataccaatatgcatgagttccattgacctaatgg 398 || | || ||||| || |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1429 gtcccgtacaagtaaccaaagatggcatacctatatgcatgagttccattgacctaatgg 1488 Query: 399 atgtcactactgtcgcatcctcacaattttcttctcaagcgggtgtcataaatgacatta 458 ||||||||||||| || | |||||||||||||||||| || ||||||||| || || | Sbjct: 1489 atgtcactactgtttcaacgtcacaattttcttctcaaacgactgtcataaaagatatca 1548 Query: 459 aggctgttgctggagtctataccttcaacctcacttgggaggatattgcaaacaacctga 518 || || ||||||||||||| ||||||||||||| ||||| |||||||| || ||||||| Sbjct: 1549 agaatggtgctggagtctattccttcaacctcacatgggatgatattgcgaagaacctga 1608 Query: 519 agcctatgatatcaaaccca 538 |||| | ||||||||||||| Sbjct: 1609 agcccaagatatcaaaccca 1628 Score = 48.1 bits (24), Expect = 0.034 Identities = 48/56 (85%) Strand = Plus / Plus Query: 560 agaaatcccagaagcaggaacgcaggaaaattcatgagattatcagacttcttggc 615 |||||||| |||| || ||| ||||||| ||||||||| |||| ||||||||||| Sbjct: 1650 agaaatcctagaaacaagaatgcaggaagtttcatgagactatcggacttcttggc 1705
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 289 bits (146), Expect = 5e-75 Identities = 242/274 (88%) Strand = Plus / Plus Query: 248 atctcccacaatggtgctagtggcgaccatcctgactgcactgacctagcttatcagaag 307 ||||||||||||||||||||||| ||| | || || |||||||||||||||||||| ||| Sbjct: 22709242 atctcccacaatggtgctagtggtgactacccagattgcactgacctagcttatcaaaag 22709301 Query: 308 gcagttgctgatggtgcagatgtcattgactgtgctgttcaagtgacaaaagatggcata 367 |||||| ||||||||||||||||||| |||||| | || ||||| || |||||||||||| Sbjct: 22709302 gcagttactgatggtgcagatgtcatcgactgtcccgtacaagtaaccaaagatggcata 22709361 Query: 368 ccaatatgcatgagttccattgacctaatggatgtcactactgtcgcatcctcacaattt 427 || ||||||||||||||||||||||||||||||||||||||||| || | ||||||||| Sbjct: 22709362 cctatatgcatgagttccattgacctaatggatgtcactactgtttcaacgtcacaattt 22709421 Query: 428 tcttctcaagcgggtgtcataaatgacattaaggctgttgctggagtctataccttcaac 487 ||||||||| || ||||||||| || || ||| || ||||||||||||| |||||||| Sbjct: 22709422 tcttctcaaacgactgtcataaaagatatcaagaatggtgctggagtctattccttcaac 22709481 Query: 488 ctcacttgggaggatattgcaaacaacctgaagc 521 ||||| ||||| |||||||| || |||||||||| Sbjct: 22709482 ctcacatgggatgatattgcgaagaacctgaagc 22709515 Score = 139 bits (70), Expect = 1e-29 Identities = 133/154 (86%) Strand = Plus / Plus Query: 39 tagaaatttatgctgctgattttgccaacgactttgcgctcagctacaactacagctatg 98 ||||| ||||||| ||||||||||| || |||||| ||||||||||||||||||||||| Sbjct: 22708847 tagaagtttatgccgctgattttgcaaatgactttttgctcagctacaactacagctatg 22708906 Query: 99 atccgttagcagaataccttcgcttcatcgataatggcgccttctgtgttgatggtctct 158 |||| ||| ||||||| ||| |||||| |||||||| ||||||| |||||| ||| | | Sbjct: 22708907 atccattaacagaatatcttaacttcattgataatggtgccttctctgttgacggtgtat 22708966 Query: 159 tgactgatttccctatcactccattagaggccat 192 |||||||||||||||| || || | ||||||||| Sbjct: 22708967 tgactgatttccctattaccccttcagaggccat 22709000 Score = 48.1 bits (24), Expect = 0.034 Identities = 48/56 (85%) Strand = Plus / Plus Query: 560 agaaatcccagaagcaggaacgcaggaaaattcatgagattatcagacttcttggc 615 |||||||| |||| || ||| ||||||| ||||||||| |||| ||||||||||| Sbjct: 22709804 agaaatcctagaaacaagaatgcaggaagtttcatgagactatcggacttcttggc 22709859
>dbj|AP005643.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0046O12 Length = 128223 Score = 289 bits (146), Expect = 5e-75 Identities = 242/274 (88%) Strand = Plus / Plus Query: 248 atctcccacaatggtgctagtggcgaccatcctgactgcactgacctagcttatcagaag 307 ||||||||||||||||||||||| ||| | || || |||||||||||||||||||| ||| Sbjct: 68038 atctcccacaatggtgctagtggtgactacccagattgcactgacctagcttatcaaaag 68097 Query: 308 gcagttgctgatggtgcagatgtcattgactgtgctgttcaagtgacaaaagatggcata 367 |||||| ||||||||||||||||||| |||||| | || ||||| || |||||||||||| Sbjct: 68098 gcagttactgatggtgcagatgtcatcgactgtcccgtacaagtaaccaaagatggcata 68157 Query: 368 ccaatatgcatgagttccattgacctaatggatgtcactactgtcgcatcctcacaattt 427 || ||||||||||||||||||||||||||||||||||||||||| || | ||||||||| Sbjct: 68158 cctatatgcatgagttccattgacctaatggatgtcactactgtttcaacgtcacaattt 68217 Query: 428 tcttctcaagcgggtgtcataaatgacattaaggctgttgctggagtctataccttcaac 487 ||||||||| || ||||||||| || || ||| || ||||||||||||| |||||||| Sbjct: 68218 tcttctcaaacgactgtcataaaagatatcaagaatggtgctggagtctattccttcaac 68277 Query: 488 ctcacttgggaggatattgcaaacaacctgaagc 521 ||||| ||||| |||||||| || |||||||||| Sbjct: 68278 ctcacatgggatgatattgcgaagaacctgaagc 68311 Score = 139 bits (70), Expect = 1e-29 Identities = 133/154 (86%) Strand = Plus / Plus Query: 39 tagaaatttatgctgctgattttgccaacgactttgcgctcagctacaactacagctatg 98 ||||| ||||||| ||||||||||| || |||||| ||||||||||||||||||||||| Sbjct: 67643 tagaagtttatgccgctgattttgcaaatgactttttgctcagctacaactacagctatg 67702 Query: 99 atccgttagcagaataccttcgcttcatcgataatggcgccttctgtgttgatggtctct 158 |||| ||| ||||||| ||| |||||| |||||||| ||||||| |||||| ||| | | Sbjct: 67703 atccattaacagaatatcttaacttcattgataatggtgccttctctgttgacggtgtat 67762 Query: 159 tgactgatttccctatcactccattagaggccat 192 |||||||||||||||| || || | ||||||||| Sbjct: 67763 tgactgatttccctattaccccttcagaggccat 67796 Score = 48.1 bits (24), Expect = 0.034 Identities = 48/56 (85%) Strand = Plus / Plus Query: 560 agaaatcccagaagcaggaacgcaggaaaattcatgagattatcagacttcttggc 615 |||||||| |||| || ||| ||||||| ||||||||| |||| ||||||||||| Sbjct: 68600 agaaatcctagaaacaagaatgcaggaagtttcatgagactatcggacttcttggc 68655
>ref|XM_472836.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2223 Score = 208 bits (105), Expect = 2e-50 Identities = 297/361 (82%) Strand = Plus / Plus Query: 41 gaaatttatgctgctgattttgccaacgactttgcgctcagctacaactacagctatgat 100 |||||||||||||| || |||||||| |||||| | |||| |||||| | ||||||||| Sbjct: 856 gaaatttatgctgccgactttgccaatgactttatgttcagttacaaccatagctatgat 915 Query: 101 ccgttagcagaataccttcgcttcatcgataatggcgccttctgtgttgatggtctcttg 160 || ||||||||||| || ||||| || ||||| || |||| ||||||||| | ||| Sbjct: 916 ccattagcagaatatctctcattcattgacaatggtgctttctctgttgatggagtattg 975 Query: 161 actgatttccctatcactccattagaggccatcggttgctttactaacctgaacaatacc 220 |||||||| ||| | || || | ||| ||||| || ||||||||||| ||||| || | | Sbjct: 976 actgattttcctgttacaccttcagaagccataggctgctttactaatctgaagaaaagc 1035 Query: 221 aaggcagatcatggggcacctctagttatctcccacaatggtgctagtggcgaccatcct 280 || |||||||||| |||||| |||| |||||||||||||||||||| || | || Sbjct: 1036 aaaacagatcatggaaagcctctaattatttcccacaatggtgctagtggggattaccca 1095 Query: 281 gactgcactgacctagcttatcagaaggcagttgctgatggtgcagatgtcattgactgt 340 | ||||||||| ||||||||||| || ||||||| ||||||||| ||||||||||| || Sbjct: 1096 gcctgcactgatctagcttatcaaaaagcagttgatgatggtgccgatgtcattgattgc 1155 Query: 341 gctgttcaagtgacaaaagatggcataccaatatgcatgagttccattgacctaatggat 400 |||| ||| |||| ||||||||||||||||||||||||||||||||| || | |||||| Sbjct: 1156 cctgtccaattgaccaaagatggcataccaatatgcatgagttccattaacttgatggat 1215 Query: 401 g 401 | Sbjct: 1216 g 1216 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 470 ggagtctataccttcaacctcacttggga 498 ||||||| |||||||||||| |||||||| Sbjct: 1285 ggagtctttaccttcaaccttacttggga 1313 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 ttcatgagattatcagactt 609 |||||||||||||||||||| Sbjct: 1405 ttcatgagattatcagactt 1424
>dbj|AK070339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048K03, full insert sequence Length = 2493 Score = 208 bits (105), Expect = 2e-50 Identities = 297/361 (82%) Strand = Plus / Plus Query: 41 gaaatttatgctgctgattttgccaacgactttgcgctcagctacaactacagctatgat 100 |||||||||||||| || |||||||| |||||| | |||| |||||| | ||||||||| Sbjct: 974 gaaatttatgctgccgactttgccaatgactttatgttcagttacaaccatagctatgat 1033 Query: 101 ccgttagcagaataccttcgcttcatcgataatggcgccttctgtgttgatggtctcttg 160 || ||||||||||| || ||||| || ||||| || |||| ||||||||| | ||| Sbjct: 1034 ccattagcagaatatctctcattcattgacaatggtgctttctctgttgatggagtattg 1093 Query: 161 actgatttccctatcactccattagaggccatcggttgctttactaacctgaacaatacc 220 |||||||| ||| | || || | ||| ||||| || ||||||||||| ||||| || | | Sbjct: 1094 actgattttcctgttacaccttcagaagccataggctgctttactaatctgaagaaaagc 1153 Query: 221 aaggcagatcatggggcacctctagttatctcccacaatggtgctagtggcgaccatcct 280 || |||||||||| |||||| |||| |||||||||||||||||||| || | || Sbjct: 1154 aaaacagatcatggaaagcctctaattatttcccacaatggtgctagtggggattaccca 1213 Query: 281 gactgcactgacctagcttatcagaaggcagttgctgatggtgcagatgtcattgactgt 340 | ||||||||| ||||||||||| || ||||||| ||||||||| ||||||||||| || Sbjct: 1214 gcctgcactgatctagcttatcaaaaagcagttgatgatggtgccgatgtcattgattgc 1273 Query: 341 gctgttcaagtgacaaaagatggcataccaatatgcatgagttccattgacctaatggat 400 |||| ||| |||| ||||||||||||||||||||||||||||||||| || | |||||| Sbjct: 1274 cctgtccaattgaccaaagatggcataccaatatgcatgagttccattaacttgatggat 1333 Query: 401 g 401 | Sbjct: 1334 g 1334 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 470 ggagtctataccttcaacctcacttggga 498 ||||||| |||||||||||| |||||||| Sbjct: 1403 ggagtctttaccttcaaccttacttggga 1431 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 ttcatgagattatcagactt 609 |||||||||||||||||||| Sbjct: 1523 ttcatgagattatcagactt 1542
>dbj|AK070336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047B14, full insert sequence Length = 1581 Score = 176 bits (89), Expect = 6e-41 Identities = 254/309 (82%) Strand = Plus / Plus Query: 93 gctatgatccgttagcagaataccttcgcttcatcgataatggcgccttctgtgttgatg 152 |||||||||| ||||||||||| || ||||| || ||||| || |||| |||||||| Sbjct: 1 gctatgatccattagcagaatatctctcattcattgacaatggtgctttctctgttgatg 60 Query: 153 gtctcttgactgatttccctatcactccattagaggccatcggttgctttactaacctga 212 | | ||||||||||| ||| | || || | ||| ||||| || ||||||||||| |||| Sbjct: 61 gagtattgactgattttcctgttacaccttcagaagccataggctgctttactaatctga 120 Query: 213 acaataccaaggcagatcatggggcacctctagttatctcccacaatggtgctagtggcg 272 | || | ||| |||||||||| |||||| |||| |||||||||||||||||||| | Sbjct: 121 agaaaagcaaaacagatcatggaaagcctctaattatttcccacaatggtgctagtgggg 180 Query: 273 accatcctgactgcactgacctagcttatcagaaggcagttgctgatggtgcagatgtca 332 | | || | ||||||||| ||||||||||| || ||||||| ||||||||| ||||||| Sbjct: 181 attacccagcctgcactgatctagcttatcaaaaagcagttgatgatggtgccgatgtca 240 Query: 333 ttgactgtgctgttcaagtgacaaaagatggcataccaatatgcatgagttccattgacc 392 |||| || |||| ||| |||| ||||||||||||||||||||||||||||||||| || Sbjct: 241 ttgattgccctgtccaattgaccaaagatggcataccaatatgcatgagttccattaact 300 Query: 393 taatggatg 401 | ||||||| Sbjct: 301 tgatggatg 309 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 470 ggagtctataccttcaacctcacttggga 498 ||||||| |||||||||||| |||||||| Sbjct: 378 ggagtctttaccttcaaccttacttggga 406 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 ttcatgagattatcagactt 609 |||||||||||||||||||| Sbjct: 498 ttcatgagattatcagactt 517
>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23, complete sequence Length = 130273 Score = 149 bits (75), Expect = 1e-32 Identities = 141/163 (86%) Strand = Plus / Plus Query: 239 cctctagttatctcccacaatggtgctagtggcgaccatcctgactgcactgacctagct 298 |||||| |||| |||||||||||||||||||| || | || | ||||||||| |||||| Sbjct: 26968 cctctaattatttcccacaatggtgctagtggggattacccagcctgcactgatctagct 27027 Query: 299 tatcagaaggcagttgctgatggtgcagatgtcattgactgtgctgttcaagtgacaaaa 358 ||||| || ||||||| ||||||||| ||||||||||| || |||| ||| |||| ||| Sbjct: 27028 tatcaaaaagcagttgatgatggtgccgatgtcattgattgccctgtccaattgaccaaa 27087 Query: 359 gatggcataccaatatgcatgagttccattgacctaatggatg 401 |||||||||||||||||||||||||||||| || | ||||||| Sbjct: 27088 gatggcataccaatatgcatgagttccattaacttgatggatg 27130 Score = 71.9 bits (36), Expect = 2e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 41 gaaatttatgctgctgattttgccaacgactttgcgctcagctacaactacagctatgat 100 |||||||||||||| || |||||||| |||||| | |||| |||||| | ||||||||| Sbjct: 26591 gaaatttatgctgccgactttgccaatgactttatgttcagttacaaccatagctatgat 26650 Query: 101 ccgttagcagaataccttcgcttcatcgataatggcgccttctgtgttgatggtctcttg 160 || ||||||||||| || ||||| || ||||| || |||| ||||||||| | ||| Sbjct: 26651 ccattagcagaatatctctcattcattgacaatggtgctttctctgttgatggagtattg 26710 Query: 161 actgattt 168 |||||||| Sbjct: 26711 actgattt 26718 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 470 ggagtctataccttcaacctcacttggga 498 ||||||| |||||||||||| |||||||| Sbjct: 27199 ggagtctttaccttcaaccttacttggga 27227 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 ttcatgagattatcagactt 609 |||||||||||||||||||| Sbjct: 27416 ttcatgagattatcagactt 27435
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 149 bits (75), Expect = 1e-32 Identities = 141/163 (86%) Strand = Plus / Plus Query: 239 cctctagttatctcccacaatggtgctagtggcgaccatcctgactgcactgacctagct 298 |||||| |||| |||||||||||||||||||| || | || | ||||||||| |||||| Sbjct: 23584287 cctctaattatttcccacaatggtgctagtggggattacccagcctgcactgatctagct 23584346 Query: 299 tatcagaaggcagttgctgatggtgcagatgtcattgactgtgctgttcaagtgacaaaa 358 ||||| || ||||||| ||||||||| ||||||||||| || |||| ||| |||| ||| Sbjct: 23584347 tatcaaaaagcagttgatgatggtgccgatgtcattgattgccctgtccaattgaccaaa 23584406 Query: 359 gatggcataccaatatgcatgagttccattgacctaatggatg 401 |||||||||||||||||||||||||||||| || | ||||||| Sbjct: 23584407 gatggcataccaatatgcatgagttccattaacttgatggatg 23584449 Score = 71.9 bits (36), Expect = 2e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 41 gaaatttatgctgctgattttgccaacgactttgcgctcagctacaactacagctatgat 100 |||||||||||||| || |||||||| |||||| | |||| |||||| | ||||||||| Sbjct: 23583910 gaaatttatgctgccgactttgccaatgactttatgttcagttacaaccatagctatgat 23583969 Query: 101 ccgttagcagaataccttcgcttcatcgataatggcgccttctgtgttgatggtctcttg 160 || ||||||||||| || ||||| || ||||| || |||| ||||||||| | ||| Sbjct: 23583970 ccattagcagaatatctctcattcattgacaatggtgctttctctgttgatggagtattg 23584029 Query: 161 actgattt 168 |||||||| Sbjct: 23584030 actgattt 23584037 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 470 ggagtctataccttcaacctcacttggga 498 ||||||| |||||||||||| |||||||| Sbjct: 23584518 ggagtctttaccttcaaccttacttggga 23584546 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 ttcatgagattatcagactt 609 |||||||||||||||||||| Sbjct: 23584735 ttcatgagattatcagactt 23584754
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 95.6 bits (48), Expect = 2e-16 Identities = 123/148 (83%) Strand = Plus / Minus Query: 246 ttatctcccacaatggtgctagtggcgaccatcctgactgcactgacctagcttatcaga 305 ||||||| || |||||||||||||| || | || ||||| || || || |||||| ||| Sbjct: 15942226 ttatctcacataatggtgctagtggagattacccggactgtacggatcttgcttatgaga 15942167 Query: 306 aggcagttgctgatggtgcagatgtcattgactgtgctgttcaagtgacaaaagatggca 365 ||||||||| |||||||||||||||||||||||| | | || |||| |||||||| | Sbjct: 15942166 aggcagttggagatggtgcagatgtcattgactgttccatcgaaatgaccaaagatggaa 15942107 Query: 366 taccaatatgcatgagttccattgacct 393 | || |||||||||||||||||| |||| Sbjct: 15942106 ttcctatatgcatgagttccattaacct 15942079
>dbj|AK119478.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-B10, full insert sequence Length = 1533 Score = 95.6 bits (48), Expect = 2e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 246 ttatctcccacaatggtgctagtggcgaccatcctgactgcactgacctagcttatcaga 305 ||||||| || |||||||||||||| || | || ||||| || || || |||||| ||| Sbjct: 155 ttatctcacataatggtgctagtggagattacccggactgtacggatcttgcttatgaga 214 Query: 306 aggcagttgctgatggtgcagatgtcattgactgtgctgttcaagtgacaaaagatggca 365 ||||||||| |||||||||||||||||||||||| | | || |||| |||||||| | Sbjct: 215 aggcagttggagatggtgcagatgtcattgactgttccatcgaaatgaccaaagatggaa 274 Query: 366 taccaatatgcatgagttccattgacct 393 | || |||||||||||||||||| |||| Sbjct: 275 ttcctatatgcatgagttccattaacct 302
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 95.6 bits (48), Expect = 2e-16 Identities = 123/148 (83%) Strand = Plus / Minus Query: 246 ttatctcccacaatggtgctagtggcgaccatcctgactgcactgacctagcttatcaga 305 ||||||| || |||||||||||||| || | || ||||| || || || |||||| ||| Sbjct: 15895459 ttatctcacataatggtgctagtggagattacccggactgtacggatcttgcttatgaga 15895400 Query: 306 aggcagttgctgatggtgcagatgtcattgactgtgctgttcaagtgacaaaagatggca 365 ||||||||| |||||||||||||||||||||||| | | || |||| |||||||| | Sbjct: 15895399 aggcagttggagatggtgcagatgtcattgactgttccatcgaaatgaccaaagatggaa 15895340 Query: 366 taccaatatgcatgagttccattgacct 393 | || |||||||||||||||||| |||| Sbjct: 15895339 ttcctatatgcatgagttccattaacct 15895312
>emb|AL772415.6|CNS08C9T Oryza sativa chromosome 12, . BAC OSJNBa0060H23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153350 Score = 95.6 bits (48), Expect = 2e-16 Identities = 123/148 (83%) Strand = Plus / Minus Query: 246 ttatctcccacaatggtgctagtggcgaccatcctgactgcactgacctagcttatcaga 305 ||||||| || |||||||||||||| || | || ||||| || || || |||||| ||| Sbjct: 9639 ttatctcacataatggtgctagtggagattacccggactgtacggatcttgcttatgaga 9580 Query: 306 aggcagttgctgatggtgcagatgtcattgactgtgctgttcaagtgacaaaagatggca 365 ||||||||| |||||||||||||||||||||||| | | || |||| |||||||| | Sbjct: 9579 aggcagttggagatggtgcagatgtcattgactgttccatcgaaatgaccaaagatggaa 9520 Query: 366 taccaatatgcatgagttccattgacct 393 | || |||||||||||||||||| |||| Sbjct: 9519 ttcctatatgcatgagttccattaacct 9492
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 73.8 bits (37), Expect = 6e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 317 gatggtgcagatgtcattgactgtgctgttcaagtgacaaaagatggcataccaatatgc 376 |||||||| ||||| ||||||||| | ||||| |||| |||||||| || || |||||| Sbjct: 10349495 gatggtgccgatgttattgactgttccattcaaatgaccaaagatggaattcctatatgc 10349436 Query: 377 atgagttccattgacct 393 ||||||||||||||||| Sbjct: 10349435 atgagttccattgacct 10349419
>dbj|AP005091.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1104_G11 Length = 140093 Score = 73.8 bits (37), Expect = 6e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 317 gatggtgcagatgtcattgactgtgctgttcaagtgacaaaagatggcataccaatatgc 376 |||||||| ||||| ||||||||| | ||||| |||| |||||||| || || |||||| Sbjct: 57200 gatggtgccgatgttattgactgttccattcaaatgaccaaagatggaattcctatatgc 57141 Query: 377 atgagttccattgacct 393 ||||||||||||||||| Sbjct: 57140 atgagttccattgacct 57124
>gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence Length = 405672 Score = 65.9 bits (33), Expect = 1e-07 Identities = 99/121 (81%) Strand = Plus / Plus Query: 243 tagttatctcccacaatggtgctagtggcgaccatcctgactgcactgacctagcttatc 302 |||||||||| || |||||||||||||| ||| | || ||||| || ||| | || || | Sbjct: 142490 tagttatctcacataatggtgctagtggagactacccggactgtacagacttggcctacc 142549 Query: 303 agaaggcagttgctgatggtgcagatgtcattgactgtgctgttcaagtgacaaaagatg 362 | | ||| ||| |||||||||||| ||||||||||| || ||||||||||||| |||| Sbjct: 142550 atagtgcaattgatgatggtgcagacatcattgactgtcctattcaagtgacaaatgatg 142609 Query: 363 g 363 | Sbjct: 142610 g 142610 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 86 aactacagctatgatccgttagcagaatacct 117 |||||||||||||||||||| ||||||||||| Sbjct: 139685 aactacagctatgatccgttggcagaatacct 139716
>gb|AY664415.1| Zea mays cultivar B73 locus 9009, complete sequence Length = 323584 Score = 65.9 bits (33), Expect = 1e-07 Identities = 99/121 (81%) Strand = Plus / Plus Query: 243 tagttatctcccacaatggtgctagtggcgaccatcctgactgcactgacctagcttatc 302 |||||||||| || |||||||||||||| ||| | || ||||| || ||| | || || | Sbjct: 130491 tagttatctcacataatggtgctagtggagactacccggactgtacagacttggcctacc 130550 Query: 303 agaaggcagttgctgatggtgcagatgtcattgactgtgctgttcaagtgacaaaagatg 362 | | ||| ||| |||||||||||| ||||||||||| || ||||||||||||| |||| Sbjct: 130551 atagtgcaattgatgatggtgcagacatcattgactgtcctattcaagtgacaaatgatg 130610 Query: 363 g 363 | Sbjct: 130611 g 130611 Score = 58.0 bits (29), Expect = 4e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 86 aactacagctatgatccgttagcagaataccttcgcttcatcgataatggcgccttctgt 145 |||||||||||||||||||| ||||||||||| ||| ||| || |||| | ||||| | Sbjct: 127686 aactacagctatgatccgttggcagaatacctgaactttatcaatgatggtggcttctct 127745 Query: 146 gttgatggt 154 ||||||||| Sbjct: 127746 gttgatggt 127754
>gb|AY111758.1| Zea mays CL9639_1 mRNA sequence Length = 1119 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 560 agaaatcccagaagcaggaacgcaggaaaattcatgagattatcagac 607 ||||||||||||| || ||| |||||||| |||||||||||||||||| Sbjct: 1101 agaaatcccagaaacaagaatgcaggaaatttcatgagattatcagac 1054
>ref|XM_483218.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Plus Query: 246 ttatctcccacaatggtgctagtggcgaccatcctgactgcactgacctagcttatcaga 305 ||||||| ||||||||||||||||| ||| | || ||||| || || | |||||||||| Sbjct: 1145 ttatctcgcacaatggtgctagtggagactacccagactgtacggatttggcttatcaga 1204 Query: 306 aggcagttgctgatggtgcagatgtcattga 336 | || |||| |||||| || ||||||||||| Sbjct: 1205 aagcggttgatgatggcgccgatgtcattga 1235
>ref|XM_507284.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1506_F01.22 patrial mRNA Length = 2702 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Plus Query: 246 ttatctcccacaatggtgctagtggcgaccatcctgactgcactgacctagcttatcaga 305 ||||||| ||||||||||||||||| ||| | || ||||| || || | |||||||||| Sbjct: 1145 ttatctcgcacaatggtgctagtggagactacccagactgtacggatttggcttatcaga 1204 Query: 306 aggcagttgctgatggtgcagatgtcattga 336 | || |||| |||||| || ||||||||||| Sbjct: 1205 aagcggttgatgatggcgccgatgtcattga 1235
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Plus Query: 246 ttatctcccacaatggtgctagtggcgaccatcctgactgcactgacctagcttatcaga 305 ||||||| ||||||||||||||||| ||| | || ||||| || || | |||||||||| Sbjct: 24862388 ttatctcgcacaatggtgctagtggagactacccagactgtacggatttggcttatcaga 24862447 Query: 306 aggcagttgctgatggtgcagatgtcattga 336 | || |||| |||||| || ||||||||||| Sbjct: 24862448 aagcggttgatgatggcgccgatgtcattga 24862478
>dbj|AP004190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1506_F01 Length = 121202 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Plus Query: 246 ttatctcccacaatggtgctagtggcgaccatcctgactgcactgacctagcttatcaga 305 ||||||| ||||||||||||||||| ||| | || ||||| || || | |||||||||| Sbjct: 66834 ttatctcgcacaatggtgctagtggagactacccagactgtacggatttggcttatcaga 66893 Query: 306 aggcagttgctgatggtgcagatgtcattga 336 | || |||| |||||| || ||||||||||| Sbjct: 66894 aagcggttgatgatggcgccgatgtcattga 66924
>dbj|AK065539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030N03, full insert sequence Length = 2801 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Plus Query: 246 ttatctcccacaatggtgctagtggcgaccatcctgactgcactgacctagcttatcaga 305 ||||||| ||||||||||||||||| ||| | || ||||| || || | |||||||||| Sbjct: 1244 ttatctcgcacaatggtgctagtggagactacccagactgtacggatttggcttatcaga 1303 Query: 306 aggcagttgctgatggtgcagatgtcattga 336 | || |||| |||||| || ||||||||||| Sbjct: 1304 aagcggttgatgatggcgccgatgtcattga 1334
>dbj|AK065218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002G11, full insert sequence Length = 2803 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Plus Query: 246 ttatctcccacaatggtgctagtggcgaccatcctgactgcactgacctagcttatcaga 305 ||||||| ||||||||||||||||| ||| | || ||||| || || | |||||||||| Sbjct: 1262 ttatctcgcacaatggtgctagtggagactacccagactgtacggatttggcttatcaga 1321 Query: 306 aggcagttgctgatggtgcagatgtcattga 336 | || |||| |||||| || ||||||||||| Sbjct: 1322 aagcggttgatgatggcgccgatgtcattga 1352
>ref|XM_965178.1| PREDICTED: Tribolium castaneum similar to CG2194-PB, isoform B (LOC658821), mRNA Length = 3154 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 79 cagctacaactacagctatgat 100 |||||||||||||||||||||| Sbjct: 1631 cagctacaactacagctatgat 1652
>ref|NM_193607.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2148 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 339 gtgctgttcaagtgacaaaagatgg 363 |||||| |||||||||||||||||| Sbjct: 455 gtgctggtcaagtgacaaaagatgg 479
>gb|AC167221.9| Mus musculus 10 BAC RP23-3P24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 204841 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 412 cgcatcctcacaattttcttc 432 ||||||||||||||||||||| Sbjct: 78974 cgcatcctcacaattttcttc 78954
>gb|AC166082.11| Mus musculus 10 BAC RP23-150M2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 170819 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 412 cgcatcctcacaattttcttc 432 ||||||||||||||||||||| Sbjct: 91632 cgcatcctcacaattttcttc 91612
>gb|AC099948.9| Mus musculus chromosome 10, clone RP23-19D21, complete sequence Length = 203086 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 412 cgcatcctcacaattttcttc 432 ||||||||||||||||||||| Sbjct: 201024 cgcatcctcacaattttcttc 201004
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome Length = 3059876 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 aataccttcgcttcatcgata 131 ||||||||||||||||||||| Sbjct: 731392 aataccttcgcttcatcgata 731372
>gb|AC008149.14| Homo sapiens 12 BAC RP11-394J1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 96995 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 562 aaatcccagaagcaggaacgc 582 ||||||||||||||||||||| Sbjct: 43810 aaatcccagaagcaggaacgc 43830
>emb|CR937673.1| Single read from an extremity of a cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAB1YI22AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 402 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 gaaatttatgctgctgatttt 61 ||||||||||||||||||||| Sbjct: 175 gaaatttatgctgctgatttt 155
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 cttcgcttcatcgataatggc 136 ||||||||||||||||||||| Sbjct: 2253333 cttcgcttcatcgataatggc 2253313
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 339 gtgctgttcaagtgacaaaagatgg 363 |||||| |||||||||||||||||| Sbjct: 22080771 gtgctggtcaagtgacaaaagatgg 22080795
>dbj|AP003413.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1151A10 Length = 124344 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 339 gtgctgttcaagtgacaaaagatgg 363 |||||| |||||||||||||||||| Sbjct: 92284 gtgctggtcaagtgacaaaagatgg 92308
>dbj|AK120948.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038C10, full insert sequence Length = 2894 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 339 gtgctgttcaagtgacaaaagatgg 363 |||||| |||||||||||||||||| Sbjct: 700 gtgctggtcaagtgacaaaagatgg 724
>gb|AY699265.1| Homo sapiens microRNA pri-miR-21, complete sequence Length = 3463 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 aggccgacttagaaatttatgctg 53 |||| ||||||||||||||||||| Sbjct: 2910 aggctgacttagaaatttatgctg 2887
>gb|AC154737.3| Mus musculus BAC clone RP24-390A6 from chromosome 9, complete sequence Length = 113204 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 acctcacttgggaggatatt 505 |||||||||||||||||||| Sbjct: 14103 acctcacttgggaggatatt 14084
>gb|AC165253.2| Mus musculus BAC clone RP23-413P10 from chromosome 9, complete sequence Length = 200549 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 560 agaaatcccagaagcaggaa 579 |||||||||||||||||||| Sbjct: 66887 agaaatcccagaagcaggaa 66868
>emb|CR847802.11| Zebrafish DNA sequence from clone DKEY-48N1 in linkage group 18, complete sequence Length = 172545 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cagctacaactacagctatg 98 |||||||||||||||||||| Sbjct: 150456 cagctacaactacagctatg 150475
>gb|AC137827.20| Medicago truncatula clone mth2-20g23, complete sequence Length = 105959 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 accctatcaagaaatcccag 570 |||||||||||||||||||| Sbjct: 59152 accctatcaagaaatcccag 59133
>gb|AC163108.5| Mus musculus BAC clone RP23-46L17 from chromosome 6, complete sequence Length = 234330 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tttatgctgctgattttgcc 64 |||||||||||||||||||| Sbjct: 110962 tttatgctgctgattttgcc 110981
>emb|AL354751.7| Human DNA sequence from clone RP11-100G15 on chromosome 9 Contains the 5' end of the SPTLC1 gene for serine palmitoyltransferase long chain base subunit 1, a pseudogene similar to part of ATP synthase 6 (MTATP6), a cytochrome c oxidase III (MTCO3) pseudogene, pseudogenes for NADH dehydrogenases 3, 4 and 4L (MTND3, MTND4L, MTND4), a protein tyrosine phosphatase pseudogene, a novel gene (LOC158314), two novel genes, part of a novel gene and a CpG island, complete sequence Length = 104228 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 aggccgacttagaaatttatgctg 53 |||| ||||||||||||||||||| Sbjct: 89889 aggctgacttagaaatttatgctg 89866
>emb|AL732621.11| Mouse DNA sequence from clone RP23-299D17 on chromosome 11 Contains part of the Asb3 gene for ankyrin repeat and SOCS box-containing protein 3 and a Cpg island, complete sequence Length = 94738 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cttagaaatttatgctgctg 56 |||||||||||||||||||| Sbjct: 89762 cttagaaatttatgctgctg 89781
>emb|CR626922.13| Zebrafish DNA sequence from clone DKEY-33K14 in linkage group 18, complete sequence Length = 122627 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 cagctacaactacagctatg 98 |||||||||||||||||||| Sbjct: 45477 cagctacaactacagctatg 45458
>gb|AC023170.10| Homo sapiens chromosome 10 clone RP11-373P23, complete sequence Length = 195448 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 acaaaagatggcataccaat 372 |||||||||||||||||||| Sbjct: 64980 acaaaagatggcataccaat 64961
>gb|AC100767.2| Homo sapiens chromosome 11, clone RP11-787P24, complete sequence Length = 170435 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 454 cattaaggctgttgctggagtcta 477 |||||||||||||||||| ||||| Sbjct: 153583 cattaaggctgttgctggtgtcta 153606
>gb|BC053563.1| Homo sapiens microRNA 21, mRNA (cDNA clone IMAGE:6190064) Length = 3404 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 aggccgacttagaaatttatgctg 53 |||| ||||||||||||||||||| Sbjct: 2865 aggctgacttagaaatttatgctg 2842
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ttcatcgataatggcgcctt 141 |||||||||||||||||||| Sbjct: 963351 ttcatcgataatggcgcctt 963370
>gb|AC118007.11| Mus musculus chromosome 9, clone RP23-377N5, complete sequence Length = 203921 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 560 agaaatcccagaagcaggaa 579 |||||||||||||||||||| Sbjct: 123404 agaaatcccagaagcaggaa 123385
>emb|AJ297850.1|MDO297850 Musca domestica partial bcd gene for bicoid protein, promoter region, exon 1 and joined CDS Length = 1293 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 cgacttagaaatttatgctg 53 |||||||||||||||||||| Sbjct: 359 cgacttagaaatttatgctg 378
>gb|AC004686.1|AC004686 Homo sapiens chromosome 17, clone hRPC.1073_F_15, complete sequence Length = 133478 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 aggccgacttagaaatttatgctg 53 |||| ||||||||||||||||||| Sbjct: 113541 aggctgacttagaaatttatgctg 113564
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome Length = 1551335 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 agttgctgatggtgcagatg 329 |||||||||||||||||||| Sbjct: 759931 agttgctgatggtgcagatg 759912 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,999,518 Number of Sequences: 3902068 Number of extensions: 4999518 Number of successful extensions: 85337 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84943 Number of HSP's gapped (non-prelim): 369 length of query: 615 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 592 effective length of database: 17,143,297,704 effective search space: 10148832240768 effective search space used: 10148832240768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
