No.
Definition
Score (bits)
E Value
1 ref|XM_471010.1| Oryza sativa (japonica cultivar-group), predic...
281
1e-72
2 dbj|AK065187.1| Oryza sativa (japonica cultivar-group) cDNA clon...
281
1e-72
3 emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4,...
125
2e-25
4 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
125
2e-25
5 emb|AL442118.2| Oryza sativa genomic DNA, chromosome 4, BAC clon...
125
2e-25
6 emb|AL606616.3|OSJN00070 Oryza sativa genomic DNA, chromosome 4,...
125
2e-25
7 gb|AY104843.1| Zea mays PCO120044 mRNA sequence
115
2e-22
8 gb|AC138453.8| Medicago truncatula clone mth2-20m14, complete se...
48
0.035
9 gb|AC107905.5| Homo sapiens chromosome 15, clone CTD-2026J24, co...
44
0.55
10 emb|AL772167.13| Mouse DNA sequence from clone RP23-203A12 on ch...
44
0.55
11 ref|NM_127353.1| Arabidopsis thaliana binding AT2G17975 mRNA, co...
42
2.2
12 gb|BT015844.1| Arabidopsis thaliana At2g17975 gene, complete cds
42
2.2
13 gb|BT015337.1| Arabidopsis thaliana At2g17975 gene, complete cds
42
2.2
14 gb|AC150707.3| Bos taurus BAC CH240-275I24 (Children's Hospital...
40
8.5
15 gb|AC126959.6| Rattus norvegicus 8 BAC CH230-10P12 (Children's H...
40
8.5
16 gb|AC147974.2| Pan troglodytes BAC clone RP43-67J16 from 7, comp...
40
8.5
17 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
40
8.5
18 gb|AY071327.1| Drosophila melanogaster RE34768 full insert cDNA
40
8.5
19 gb|AC113977.16| Mus musculus chromosome 1, clone RP23-161E13, co...
40
8.5
20 gb|AC122411.4| Mus musculus BAC clone RP24-143P19 from chromosom...
40
8.5
21 ref|XM_647804.1| Entamoeba histolytica HM-1:IMSS hypothetical pr...
40
8.5
22 ref|XM_504742.1| Yarrowia lipolytica CLIB122, YALI0E33715g predi...
40
8.5
23 emb|AL359893.16| Human DNA sequence from clone RP11-35N6 on chro...
40
8.5
24 emb|AL133340.27| Human DNA sequence from clone RP11-204H22 on ch...
40
8.5
25 gb|AC150683.3| Mus musculus BAC clone RP23-435E16 from chromosom...
40
8.5
26 gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare str...
40
8.5
27 gb|AC090512.3|AC090512 Homo sapiens chromosome 15 clone RP11-134...
40
8.5
28 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
40
8.5
29 ref|NM_001015400.1| Drosophila melanogaster CG40410-PA.3 (CG4041...
40
8.5
30 dbj|AK069285.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
8.5
31 gb|CP000220.1| Drosophila melanogaster genomic scaffold 21100002...
40
8.5
32 emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ...
40
8.5
>emb|AL606642.3 |OSJN00073 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H06,
complete sequence
Length = 143730
Score = 125 bits (63), Expect = 2e-25
Identities = 110/125 (88%), Gaps = 3/125 (2%)
Strand = Plus / Minus
Query: 50 ggttgcagtaacaataattatgcatccagaaagaactgcaagaagtgcaacctgcccaag 109
||||||||||||||||||||||||||||||||||||||||| || || |||||| |||
Sbjct: 143118 ggttgcagtaacaataattatgcatccagaaagaactgcaaaaaatgtggcctgccgaag 143059
Query: 110 gaggaagcagccatgccacaattatcaatgggaggaatg---atgccagcgtatgcagat 166
||||||||||| |||||| ||||||||||| ||||||| |||||||| |||||| ||
Sbjct: 143058 gaggaagcagcaatgccagcattatcaatggcaggaatggccatgccagcttatgcaaat 142999
Query: 167 tatat 171
|||||
Sbjct: 142998 tatat 142994
Score = 119 bits (60), Expect = 1e-23
Identities = 159/192 (82%)
Strand = Plus / Minus
Query: 217 tggcaatccagctatgcagcagcagctacttgcaaacgcaaactggccttatggggtggc 276
||||||| ||||| |||| |||||||||||||||| |||||||||||||||| | ||||
Sbjct: 142939 tggcaattcagctttgcaacagcagctacttgcaagtgcaaactggccttatgcgttggc 142880
Query: 277 tgctagatatggtatgcaatcgtctctttggcagttcgccggcaacagcactaatcagtt 336
|| ||||||||| |||||| | || |||| || | |||||||| | | ||||||||
Sbjct: 142879 tggtagatatgggatgcaagctgctggctggccatttggcggcaacaacgcaaatcagtt 142820
Query: 337 tcaaggtgttccaaaggactggcgtagtggtgactggctctgcagctgtggattccataa 396
| || | |||||| ||||||||||| ||||| ||||| || ||||||||||| |||||
Sbjct: 142819 ttcagcggctccaaaagactggcgtagcggtgattggctttgtagctgtggatttcataa 142760
Query: 397 ctactcatctcg 408
||||||||||||
Sbjct: 142759 ctactcatctcg 142748
Score = 89.7 bits (45), Expect = 1e-14
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 490 ttcaacattaggtaataagcggttggcatcagaggagcttgctaatgactgggataataa 549
|||| ||||||| | |||||||||||| |||||||| ||||| ||||| |||||||| ||
Sbjct: 141702 ttcagcattaggaactaagcggttggcgtcagaggaacttgccaatgaatgggataacaa 141643
Query: 550 aaggctgaacccaggaaatgctaattatccactttca 586
|||||| || ||||||||||| | ||||||||||||
Sbjct: 141642 aaggcttaatccaggaaatgcaagctatccactttca 141606
Score = 65.9 bits (33), Expect = 1e-07
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 412 tcagtgtaaagagtgtaatgcacctgtcccatcaggcatggcctctacaaccatgaaatc 471
|||||||||| |||||| ||| ||||| ||||||||||| |||| ||||| |||||| |
Sbjct: 142251 tcagtgtaaacagtgtagtgctcctgtaccatcaggcattccctccacaacaatgaaaac 142192
Query: 472 cacaggagcagatagttcttc 492
||||| | |||||| ||||||
Sbjct: 142191 cacagtaccagatacttcttc 142171
>dbj|AP008210.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
complete sequence
Length = 35498469
Score = 125 bits (63), Expect = 2e-25
Identities = 110/125 (88%), Gaps = 3/125 (2%)
Strand = Plus / Minus
Query: 50 ggttgcagtaacaataattatgcatccagaaagaactgcaagaagtgcaacctgcccaag 109
||||||||||||||||||||||||||||||||||||||||| || || |||||| |||
Sbjct: 612151 ggttgcagtaacaataattatgcatccagaaagaactgcaaaaaatgtggcctgccgaag 612092
Query: 110 gaggaagcagccatgccacaattatcaatgggaggaatg---atgccagcgtatgcagat 166
||||||||||| |||||| ||||||||||| ||||||| |||||||| |||||| ||
Sbjct: 612091 gaggaagcagcaatgccagcattatcaatggcaggaatggccatgccagcttatgcaaat 612032
Query: 167 tatat 171
|||||
Sbjct: 612031 tatat 612027
Score = 119 bits (60), Expect = 1e-23
Identities = 159/192 (82%)
Strand = Plus / Minus
Query: 217 tggcaatccagctatgcagcagcagctacttgcaaacgcaaactggccttatggggtggc 276
||||||| ||||| |||| |||||||||||||||| |||||||||||||||| | ||||
Sbjct: 611972 tggcaattcagctttgcaacagcagctacttgcaagtgcaaactggccttatgcgttggc 611913
Query: 277 tgctagatatggtatgcaatcgtctctttggcagttcgccggcaacagcactaatcagtt 336
|| ||||||||| |||||| | || |||| || | |||||||| | | ||||||||
Sbjct: 611912 tggtagatatgggatgcaagctgctggctggccatttggcggcaacaacgcaaatcagtt 611853
Query: 337 tcaaggtgttccaaaggactggcgtagtggtgactggctctgcagctgtggattccataa 396
| || | |||||| ||||||||||| ||||| ||||| || ||||||||||| |||||
Sbjct: 611852 ttcagcggctccaaaagactggcgtagcggtgattggctttgtagctgtggatttcataa 611793
Query: 397 ctactcatctcg 408
||||||||||||
Sbjct: 611792 ctactcatctcg 611781
Score = 89.7 bits (45), Expect = 1e-14
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 490 ttcaacattaggtaataagcggttggcatcagaggagcttgctaatgactgggataataa 549
|||| ||||||| | |||||||||||| |||||||| ||||| ||||| |||||||| ||
Sbjct: 610735 ttcagcattaggaactaagcggttggcgtcagaggaacttgccaatgaatgggataacaa 610676
Query: 550 aaggctgaacccaggaaatgctaattatccactttca 586
|||||| || ||||||||||| | ||||||||||||
Sbjct: 610675 aaggcttaatccaggaaatgcaagctatccactttca 610639
Score = 65.9 bits (33), Expect = 1e-07
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 412 tcagtgtaaagagtgtaatgcacctgtcccatcaggcatggcctctacaaccatgaaatc 471
|||||||||| |||||| ||| ||||| ||||||||||| |||| ||||| |||||| |
Sbjct: 611284 tcagtgtaaacagtgtagtgctcctgtaccatcaggcattccctccacaacaatgaaaac 611225
Query: 472 cacaggagcagatagttcttc 492
||||| | |||||| ||||||
Sbjct: 611224 cacagtaccagatacttcttc 611204
Score = 61.9 bits (31), Expect = 2e-06
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 14 aagtggctcccacgcgccggcgactggatctgcaacggt 52
||||||||||| |||||||||||||||||||||| ||||
Sbjct: 613052 aagtggctcccccgcgccggcgactggatctgcaccggt 613014
>emb|AL442118.2 | Oryza sativa genomic DNA, chromosome 4, BAC clone: H0201G08, complete
sequence
Length = 121821
Score = 125 bits (63), Expect = 2e-25
Identities = 110/125 (88%), Gaps = 3/125 (2%)
Strand = Plus / Minus
Query: 50 ggttgcagtaacaataattatgcatccagaaagaactgcaagaagtgcaacctgcccaag 109
||||||||||||||||||||||||||||||||||||||||| || || |||||| |||
Sbjct: 86612 ggttgcagtaacaataattatgcatccagaaagaactgcaaaaaatgtggcctgccgaag 86553
Query: 110 gaggaagcagccatgccacaattatcaatgggaggaatg---atgccagcgtatgcagat 166
||||||||||| |||||| ||||||||||| ||||||| |||||||| |||||| ||
Sbjct: 86552 gaggaagcagcaatgccagcattatcaatggcaggaatggctatgccagcttatgcaaat 86493
Query: 167 tatat 171
|||||
Sbjct: 86492 tatat 86488
Score = 119 bits (60), Expect = 1e-23
Identities = 159/192 (82%)
Strand = Plus / Minus
Query: 217 tggcaatccagctatgcagcagcagctacttgcaaacgcaaactggccttatggggtggc 276
||||||| ||||| |||| |||||||||||||||| |||||||||||||||| | ||||
Sbjct: 86433 tggcaattcagctttgcaacagcagctacttgcaagtgcaaactggccttatgcgttggc 86374
Query: 277 tgctagatatggtatgcaatcgtctctttggcagttcgccggcaacagcactaatcagtt 336
|| ||||||||| |||||| | || |||| || | |||||||| | | ||||||||
Sbjct: 86373 tggtagatatgggatgcaagctgctggctggccatttggcggcaacaacgcaaatcagtt 86314
Query: 337 tcaaggtgttccaaaggactggcgtagtggtgactggctctgcagctgtggattccataa 396
| || | |||||| || |||||||| ||||||||||| || ||||||||||| |||||
Sbjct: 86313 ttcagcggctccaaaagattggcgtagcggtgactggctttgtagctgtggatttcataa 86254
Query: 397 ctactcatctcg 408
||||||||||||
Sbjct: 86253 ctactcatctcg 86242
Score = 89.7 bits (45), Expect = 1e-14
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 490 ttcaacattaggtaataagcggttggcatcagaggagcttgctaatgactgggataataa 549
|||| ||||||| | |||||||||||| |||||||| ||||| ||||| |||||||| ||
Sbjct: 85204 ttcagcattaggaactaagcggttggcgtcagaggaacttgccaatgaatgggataacaa 85145
Query: 550 aaggctgaacccaggaaatgctaattatccactttca 586
|||||| || ||||||||||| | ||||||||||||
Sbjct: 85144 aaggcttaatccaggaaatgcaagctatccactttca 85108
Score = 65.9 bits (33), Expect = 1e-07
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 412 tcagtgtaaagagtgtaatgcacctgtcccatcaggcatggcctctacaaccatgaaatc 471
|||||||||| |||||| ||| ||||| ||||||||||| |||| ||||| |||||| |
Sbjct: 85745 tcagtgtaaacagtgtagtgctcctgtaccatcaggcattccctccacaacaatgaaaac 85686
Query: 472 cacaggagcagatagttcttc 492
||||| | |||||| ||||||
Sbjct: 85685 cacagtaccagatacttcttc 85665
Score = 61.9 bits (31), Expect = 2e-06
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 14 aagtggctcccacgcgccggcgactggatctgcaacggt 52
||||||||||| |||||||||||||||||||||| ||||
Sbjct: 87512 aagtggctcccccgcgccggcgactggatctgcaccggt 87474
>emb|AL606616.3 |OSJN00070 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060M15,
complete sequence
Length = 119918
Score = 125 bits (63), Expect = 2e-25
Identities = 110/125 (88%), Gaps = 3/125 (2%)
Strand = Plus / Minus
Query: 50 ggttgcagtaacaataattatgcatccagaaagaactgcaagaagtgcaacctgcccaag 109
||||||||||||||||||||||||||||||||||||||||| || || |||||| |||
Sbjct: 3023 ggttgcagtaacaataattatgcatccagaaagaactgcaaaaaatgtggcctgccgaag 2964
Query: 110 gaggaagcagccatgccacaattatcaatgggaggaatg---atgccagcgtatgcagat 166
||||||||||| |||||| ||||||||||| ||||||| |||||||| |||||| ||
Sbjct: 2963 gaggaagcagcaatgccagcattatcaatggcaggaatggccatgccagcttatgcaaat 2904
Query: 167 tatat 171
|||||
Sbjct: 2903 tatat 2899
Score = 119 bits (60), Expect = 1e-23
Identities = 159/192 (82%)
Strand = Plus / Minus
Query: 217 tggcaatccagctatgcagcagcagctacttgcaaacgcaaactggccttatggggtggc 276
||||||| ||||| |||| |||||||||||||||| |||||||||||||||| | ||||
Sbjct: 2844 tggcaattcagctttgcaacagcagctacttgcaagtgcaaactggccttatgcgttggc 2785
Query: 277 tgctagatatggtatgcaatcgtctctttggcagttcgccggcaacagcactaatcagtt 336
|| ||||||||| |||||| | || |||| || | |||||||| | | ||||||||
Sbjct: 2784 tggtagatatgggatgcaagctgctggctggccatttggcggcaacaacgcaaatcagtt 2725
Query: 337 tcaaggtgttccaaaggactggcgtagtggtgactggctctgcagctgtggattccataa 396
| || | |||||| ||||||||||| ||||| ||||| || ||||||||||| |||||
Sbjct: 2724 ttcagcggctccaaaagactggcgtagcggtgattggctttgtagctgtggatttcataa 2665
Query: 397 ctactcatctcg 408
||||||||||||
Sbjct: 2664 ctactcatctcg 2653
Score = 89.7 bits (45), Expect = 1e-14
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 490 ttcaacattaggtaataagcggttggcatcagaggagcttgctaatgactgggataataa 549
|||| ||||||| | |||||||||||| |||||||| ||||| ||||| |||||||| ||
Sbjct: 1607 ttcagcattaggaactaagcggttggcgtcagaggaacttgccaatgaatgggataacaa 1548
Query: 550 aaggctgaacccaggaaatgctaattatccactttca 586
|||||| || ||||||||||| | ||||||||||||
Sbjct: 1547 aaggcttaatccaggaaatgcaagctatccactttca 1511
Score = 65.9 bits (33), Expect = 1e-07
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 412 tcagtgtaaagagtgtaatgcacctgtcccatcaggcatggcctctacaaccatgaaatc 471
|||||||||| |||||| ||| ||||| ||||||||||| |||| ||||| |||||| |
Sbjct: 2156 tcagtgtaaacagtgtagtgctcctgtaccatcaggcattccctccacaacaatgaaaac 2097
Query: 472 cacaggagcagatagttcttc 492
||||| | |||||| ||||||
Sbjct: 2096 cacagtaccagatacttcttc 2076
Score = 61.9 bits (31), Expect = 2e-06
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 14 aagtggctcccacgcgccggcgactggatctgcaacggt 52
||||||||||| |||||||||||||||||||||| ||||
Sbjct: 3924 aagtggctcccccgcgccggcgactggatctgcaccggt 3886
>emb|CR382131.1 | Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
Length = 4224103
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 tctgcaacggttgcagtaac 61
||||||||||||||||||||
Sbjct: 4003196 tctgcaacggttgcagtaac 4003215
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,199,269
Number of Sequences: 3902068
Number of extensions: 6199269
Number of successful extensions: 109274
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109052
Number of HSP's gapped (non-prelim): 222
length of query: 627
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 604
effective length of database: 17,143,297,704
effective search space: 10354551813216
effective search space used: 10354551813216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)