ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags33a24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_471010.1| Oryza sativa (japonica cultivar-group), predic... 281 1e-72
2dbj|AK065187.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 1e-72
3emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4,... 125 2e-25
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
5emb|AL442118.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 125 2e-25
6emb|AL606616.3|OSJN00070 Oryza sativa genomic DNA, chromosome 4,... 125 2e-25
7gb|AY104843.1| Zea mays PCO120044 mRNA sequence 115 2e-22
8gb|AC138453.8| Medicago truncatula clone mth2-20m14, complete se... 48 0.035
9gb|AC107905.5| Homo sapiens chromosome 15, clone CTD-2026J24, co... 44 0.55
10emb|AL772167.13| Mouse DNA sequence from clone RP23-203A12 on ch... 44 0.55
11ref|NM_127353.1| Arabidopsis thaliana binding AT2G17975 mRNA, co... 42 2.2
12gb|BT015844.1| Arabidopsis thaliana At2g17975 gene, complete cds 42 2.2
13gb|BT015337.1| Arabidopsis thaliana At2g17975 gene, complete cds 42 2.2
14gb|AC150707.3| Bos taurus BAC CH240-275I24 (Children's Hospital... 40 8.5
15gb|AC126959.6| Rattus norvegicus 8 BAC CH230-10P12 (Children's H... 40 8.5
16gb|AC147974.2| Pan troglodytes BAC clone RP43-67J16 from 7, comp... 40 8.5
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.5
18gb|AY071327.1| Drosophila melanogaster RE34768 full insert cDNA 40 8.5
19gb|AC113977.16| Mus musculus chromosome 1, clone RP23-161E13, co... 40 8.5
20gb|AC122411.4| Mus musculus BAC clone RP24-143P19 from chromosom... 40 8.5
21ref|XM_647804.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 8.5
22ref|XM_504742.1| Yarrowia lipolytica CLIB122, YALI0E33715g predi... 40 8.5
23emb|AL359893.16| Human DNA sequence from clone RP11-35N6 on chro... 40 8.5
24emb|AL133340.27| Human DNA sequence from clone RP11-204H22 on ch... 40 8.5
25gb|AC150683.3| Mus musculus BAC clone RP23-435E16 from chromosom... 40 8.5
26gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.5
27gb|AC090512.3|AC090512 Homo sapiens chromosome 15 clone RP11-134... 40 8.5
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
29ref|NM_001015400.1| Drosophila melanogaster CG40410-PA.3 (CG4041... 40 8.5
30dbj|AK069285.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.5
31gb|CP000220.1| Drosophila melanogaster genomic scaffold 21100002... 40 8.5
32emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 40 8.5

>ref|XM_471010.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 750

 Score =  281 bits (142), Expect = 1e-72
 Identities = 331/394 (84%)
 Strand = Plus / Plus

                                                                       
Query: 217 tggcaatccagctatgcagcagcagctacttgcaaacgcaaactggccttatggggtggc 276
           ||||||| ||||| |||| ||||||||||||||||  |||||||||||||||| | ||||
Sbjct: 108 tggcaattcagctttgcaacagcagctacttgcaagtgcaaactggccttatgcgttggc 167

                                                                       
Query: 277 tgctagatatggtatgcaatcgtctctttggcagttcgccggcaacagcactaatcagtt 336
           || ||||||||| |||||| |  ||   ||||  || | |||||||| | | ||||||||
Sbjct: 168 tggtagatatgggatgcaagctgctggctggccatttggcggcaacaacgcaaatcagtt 227

                                                                       
Query: 337 tcaaggtgttccaaaggactggcgtagtggtgactggctctgcagctgtggattccataa 396
           |  ||  | |||||| ||||||||||| ||||| ||||| || ||||||||||| |||||
Sbjct: 228 ttcagcggctccaaaagactggcgtagcggtgattggctttgtagctgtggatttcataa 287

                                                                       
Query: 397 ctactcatctcgtgctcagtgtaaagagtgtaatgcacctgtcccatcaggcatggcctc 456
           ||||||||||||  | ||||||||| |||||| ||| ||||| |||||||||||  ||||
Sbjct: 288 ctactcatctcgcacacagtgtaaacagtgtagtgctcctgtaccatcaggcattccctc 347

                                                                       
Query: 457 tacaaccatgaaatccacaggagcagatagttcttcaacattaggtaataagcggttggc 516
            ||||| |||||| |||||| | |||||| |||||| |||||||| | ||||||||||||
Sbjct: 348 cacaacaatgaaaaccacagtaccagatacttcttccacattaggaactaagcggttggc 407

                                                                       
Query: 517 atcagaggagcttgctaatgactgggataataaaaggctgaacccaggaaatgctaatta 576
            |||||||| ||||| ||||| |||||||| |||||||| || ||||||||||| |  ||
Sbjct: 408 gtcagaggaacttgccaatgaatgggataacaaaaggcttaatccaggaaatgcaagcta 467

                                             
Query: 577 tccactttcaacagcaggctcagataatttattt 610
           ||||||||||||||||||| | ||||||||||||
Sbjct: 468 tccactttcaacagcaggcacggataatttattt 501



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>dbj|AK065187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E01, full
            insert sequence
          Length = 2356

 Score =  281 bits (142), Expect = 1e-72
 Identities = 331/394 (84%)
 Strand = Plus / Plus

                                                                        
Query: 217  tggcaatccagctatgcagcagcagctacttgcaaacgcaaactggccttatggggtggc 276
            ||||||| ||||| |||| ||||||||||||||||  |||||||||||||||| | ||||
Sbjct: 1283 tggcaattcagctttgcaacagcagctacttgcaagtgcaaactggccttatgcgttggc 1342

                                                                        
Query: 277  tgctagatatggtatgcaatcgtctctttggcagttcgccggcaacagcactaatcagtt 336
            || ||||||||| |||||| |  ||   ||||  || | |||||||| | | ||||||||
Sbjct: 1343 tggtagatatgggatgcaagctgctggctggccatttggcggcaacaacgcaaatcagtt 1402

                                                                        
Query: 337  tcaaggtgttccaaaggactggcgtagtggtgactggctctgcagctgtggattccataa 396
            |  ||  | |||||| ||||||||||| ||||| ||||| || ||||||||||| |||||
Sbjct: 1403 ttcagcggctccaaaagactggcgtagcggtgattggctttgtagctgtggatttcataa 1462

                                                                        
Query: 397  ctactcatctcgtgctcagtgtaaagagtgtaatgcacctgtcccatcaggcatggcctc 456
            ||||||||||||  | ||||||||| |||||| ||| ||||| |||||||||||  ||||
Sbjct: 1463 ctactcatctcgcacacagtgtaaacagtgtagtgctcctgtaccatcaggcattccctc 1522

                                                                        
Query: 457  tacaaccatgaaatccacaggagcagatagttcttcaacattaggtaataagcggttggc 516
             ||||| |||||| |||||| | |||||| |||||| |||||||| | ||||||||||||
Sbjct: 1523 cacaacaatgaaaaccacagtaccagatacttcttccacattaggaactaagcggttggc 1582

                                                                        
Query: 517  atcagaggagcttgctaatgactgggataataaaaggctgaacccaggaaatgctaatta 576
             |||||||| ||||| ||||| |||||||| |||||||| || ||||||||||| |  ||
Sbjct: 1583 gtcagaggaacttgccaatgaatgggataacaaaaggcttaatccaggaaatgcaagcta 1642

                                              
Query: 577  tccactttcaacagcaggctcagataatttattt 610
            ||||||||||||||||||| | ||||||||||||
Sbjct: 1643 tccactttcaacagcaggcacggataatttattt 1676



 Score =  125 bits (63), Expect = 2e-25
 Identities = 110/125 (88%), Gaps = 3/125 (2%)
 Strand = Plus / Plus

                                                                        
Query: 50   ggttgcagtaacaataattatgcatccagaaagaactgcaagaagtgcaacctgcccaag 109
            ||||||||||||||||||||||||||||||||||||||||| || ||   |||||| |||
Sbjct: 1104 ggttgcagtaacaataattatgcatccagaaagaactgcaaaaaatgtggcctgccgaag 1163

                                                                        
Query: 110  gaggaagcagccatgccacaattatcaatgggaggaatg---atgccagcgtatgcagat 166
            ||||||||||| ||||||  ||||||||||| |||||||   |||||||| |||||| ||
Sbjct: 1164 gaggaagcagcaatgccagcattatcaatggcaggaatggccatgccagcttatgcaaat 1223

                 
Query: 167  tatat 171
            |||||
Sbjct: 1224 tatat 1228



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 14  aagtggctcccacgcgccggcgactggatctgcaacggt 52
           ||||||||||| |||||||||||||||||||||| ||||
Sbjct: 203 aagtggctcccccgcgccggcgactggatctgcaccggt 241



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>emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H06,
              complete sequence
          Length = 143730

 Score =  125 bits (63), Expect = 2e-25
 Identities = 110/125 (88%), Gaps = 3/125 (2%)
 Strand = Plus / Minus

                                                                          
Query: 50     ggttgcagtaacaataattatgcatccagaaagaactgcaagaagtgcaacctgcccaag 109
              ||||||||||||||||||||||||||||||||||||||||| || ||   |||||| |||
Sbjct: 143118 ggttgcagtaacaataattatgcatccagaaagaactgcaaaaaatgtggcctgccgaag 143059

                                                                          
Query: 110    gaggaagcagccatgccacaattatcaatgggaggaatg---atgccagcgtatgcagat 166
              ||||||||||| ||||||  ||||||||||| |||||||   |||||||| |||||| ||
Sbjct: 143058 gaggaagcagcaatgccagcattatcaatggcaggaatggccatgccagcttatgcaaat 142999

                   
Query: 167    tatat 171
              |||||
Sbjct: 142998 tatat 142994



 Score =  119 bits (60), Expect = 1e-23
 Identities = 159/192 (82%)
 Strand = Plus / Minus

                                                                          
Query: 217    tggcaatccagctatgcagcagcagctacttgcaaacgcaaactggccttatggggtggc 276
              ||||||| ||||| |||| ||||||||||||||||  |||||||||||||||| | ||||
Sbjct: 142939 tggcaattcagctttgcaacagcagctacttgcaagtgcaaactggccttatgcgttggc 142880

                                                                          
Query: 277    tgctagatatggtatgcaatcgtctctttggcagttcgccggcaacagcactaatcagtt 336
              || ||||||||| |||||| |  ||   ||||  || | |||||||| | | ||||||||
Sbjct: 142879 tggtagatatgggatgcaagctgctggctggccatttggcggcaacaacgcaaatcagtt 142820

                                                                          
Query: 337    tcaaggtgttccaaaggactggcgtagtggtgactggctctgcagctgtggattccataa 396
              |  ||  | |||||| ||||||||||| ||||| ||||| || ||||||||||| |||||
Sbjct: 142819 ttcagcggctccaaaagactggcgtagcggtgattggctttgtagctgtggatttcataa 142760

                          
Query: 397    ctactcatctcg 408
              ||||||||||||
Sbjct: 142759 ctactcatctcg 142748



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                          
Query: 490    ttcaacattaggtaataagcggttggcatcagaggagcttgctaatgactgggataataa 549
              |||| ||||||| | |||||||||||| |||||||| ||||| ||||| |||||||| ||
Sbjct: 141702 ttcagcattaggaactaagcggttggcgtcagaggaacttgccaatgaatgggataacaa 141643

                                                   
Query: 550    aaggctgaacccaggaaatgctaattatccactttca 586
              |||||| || ||||||||||| |  ||||||||||||
Sbjct: 141642 aaggcttaatccaggaaatgcaagctatccactttca 141606



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                          
Query: 412    tcagtgtaaagagtgtaatgcacctgtcccatcaggcatggcctctacaaccatgaaatc 471
              |||||||||| |||||| ||| ||||| |||||||||||  |||| ||||| |||||| |
Sbjct: 142251 tcagtgtaaacagtgtagtgctcctgtaccatcaggcattccctccacaacaatgaaaac 142192

                                   
Query: 472    cacaggagcagatagttcttc 492
              ||||| | |||||| ||||||
Sbjct: 142191 cacagtaccagatacttcttc 142171



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score =  125 bits (63), Expect = 2e-25
 Identities = 110/125 (88%), Gaps = 3/125 (2%)
 Strand = Plus / Minus

                                                                          
Query: 50     ggttgcagtaacaataattatgcatccagaaagaactgcaagaagtgcaacctgcccaag 109
              ||||||||||||||||||||||||||||||||||||||||| || ||   |||||| |||
Sbjct: 612151 ggttgcagtaacaataattatgcatccagaaagaactgcaaaaaatgtggcctgccgaag 612092

                                                                          
Query: 110    gaggaagcagccatgccacaattatcaatgggaggaatg---atgccagcgtatgcagat 166
              ||||||||||| ||||||  ||||||||||| |||||||   |||||||| |||||| ||
Sbjct: 612091 gaggaagcagcaatgccagcattatcaatggcaggaatggccatgccagcttatgcaaat 612032

                   
Query: 167    tatat 171
              |||||
Sbjct: 612031 tatat 612027



 Score =  119 bits (60), Expect = 1e-23
 Identities = 159/192 (82%)
 Strand = Plus / Minus

                                                                          
Query: 217    tggcaatccagctatgcagcagcagctacttgcaaacgcaaactggccttatggggtggc 276
              ||||||| ||||| |||| ||||||||||||||||  |||||||||||||||| | ||||
Sbjct: 611972 tggcaattcagctttgcaacagcagctacttgcaagtgcaaactggccttatgcgttggc 611913

                                                                          
Query: 277    tgctagatatggtatgcaatcgtctctttggcagttcgccggcaacagcactaatcagtt 336
              || ||||||||| |||||| |  ||   ||||  || | |||||||| | | ||||||||
Sbjct: 611912 tggtagatatgggatgcaagctgctggctggccatttggcggcaacaacgcaaatcagtt 611853

                                                                          
Query: 337    tcaaggtgttccaaaggactggcgtagtggtgactggctctgcagctgtggattccataa 396
              |  ||  | |||||| ||||||||||| ||||| ||||| || ||||||||||| |||||
Sbjct: 611852 ttcagcggctccaaaagactggcgtagcggtgattggctttgtagctgtggatttcataa 611793

                          
Query: 397    ctactcatctcg 408
              ||||||||||||
Sbjct: 611792 ctactcatctcg 611781



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                          
Query: 490    ttcaacattaggtaataagcggttggcatcagaggagcttgctaatgactgggataataa 549
              |||| ||||||| | |||||||||||| |||||||| ||||| ||||| |||||||| ||
Sbjct: 610735 ttcagcattaggaactaagcggttggcgtcagaggaacttgccaatgaatgggataacaa 610676

                                                   
Query: 550    aaggctgaacccaggaaatgctaattatccactttca 586
              |||||| || ||||||||||| |  ||||||||||||
Sbjct: 610675 aaggcttaatccaggaaatgcaagctatccactttca 610639



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                          
Query: 412    tcagtgtaaagagtgtaatgcacctgtcccatcaggcatggcctctacaaccatgaaatc 471
              |||||||||| |||||| ||| ||||| |||||||||||  |||| ||||| |||||| |
Sbjct: 611284 tcagtgtaaacagtgtagtgctcctgtaccatcaggcattccctccacaacaatgaaaac 611225

                                   
Query: 472    cacaggagcagatagttcttc 492
              ||||| | |||||| ||||||
Sbjct: 611224 cacagtaccagatacttcttc 611204



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 14     aagtggctcccacgcgccggcgactggatctgcaacggt 52
              ||||||||||| |||||||||||||||||||||| ||||
Sbjct: 613052 aagtggctcccccgcgccggcgactggatctgcaccggt 613014



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>emb|AL442118.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0201G08, complete
             sequence
          Length = 121821

 Score =  125 bits (63), Expect = 2e-25
 Identities = 110/125 (88%), Gaps = 3/125 (2%)
 Strand = Plus / Minus

                                                                         
Query: 50    ggttgcagtaacaataattatgcatccagaaagaactgcaagaagtgcaacctgcccaag 109
             ||||||||||||||||||||||||||||||||||||||||| || ||   |||||| |||
Sbjct: 86612 ggttgcagtaacaataattatgcatccagaaagaactgcaaaaaatgtggcctgccgaag 86553

                                                                         
Query: 110   gaggaagcagccatgccacaattatcaatgggaggaatg---atgccagcgtatgcagat 166
             ||||||||||| ||||||  ||||||||||| |||||||   |||||||| |||||| ||
Sbjct: 86552 gaggaagcagcaatgccagcattatcaatggcaggaatggctatgccagcttatgcaaat 86493

                  
Query: 167   tatat 171
             |||||
Sbjct: 86492 tatat 86488



 Score =  119 bits (60), Expect = 1e-23
 Identities = 159/192 (82%)
 Strand = Plus / Minus

                                                                         
Query: 217   tggcaatccagctatgcagcagcagctacttgcaaacgcaaactggccttatggggtggc 276
             ||||||| ||||| |||| ||||||||||||||||  |||||||||||||||| | ||||
Sbjct: 86433 tggcaattcagctttgcaacagcagctacttgcaagtgcaaactggccttatgcgttggc 86374

                                                                         
Query: 277   tgctagatatggtatgcaatcgtctctttggcagttcgccggcaacagcactaatcagtt 336
             || ||||||||| |||||| |  ||   ||||  || | |||||||| | | ||||||||
Sbjct: 86373 tggtagatatgggatgcaagctgctggctggccatttggcggcaacaacgcaaatcagtt 86314

                                                                         
Query: 337   tcaaggtgttccaaaggactggcgtagtggtgactggctctgcagctgtggattccataa 396
             |  ||  | |||||| || |||||||| ||||||||||| || ||||||||||| |||||
Sbjct: 86313 ttcagcggctccaaaagattggcgtagcggtgactggctttgtagctgtggatttcataa 86254

                         
Query: 397   ctactcatctcg 408
             ||||||||||||
Sbjct: 86253 ctactcatctcg 86242



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                         
Query: 490   ttcaacattaggtaataagcggttggcatcagaggagcttgctaatgactgggataataa 549
             |||| ||||||| | |||||||||||| |||||||| ||||| ||||| |||||||| ||
Sbjct: 85204 ttcagcattaggaactaagcggttggcgtcagaggaacttgccaatgaatgggataacaa 85145

                                                  
Query: 550   aaggctgaacccaggaaatgctaattatccactttca 586
             |||||| || ||||||||||| |  ||||||||||||
Sbjct: 85144 aaggcttaatccaggaaatgcaagctatccactttca 85108



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                         
Query: 412   tcagtgtaaagagtgtaatgcacctgtcccatcaggcatggcctctacaaccatgaaatc 471
             |||||||||| |||||| ||| ||||| |||||||||||  |||| ||||| |||||| |
Sbjct: 85745 tcagtgtaaacagtgtagtgctcctgtaccatcaggcattccctccacaacaatgaaaac 85686

                                  
Query: 472   cacaggagcagatagttcttc 492
             ||||| | |||||| ||||||
Sbjct: 85685 cacagtaccagatacttcttc 85665



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 14    aagtggctcccacgcgccggcgactggatctgcaacggt 52
             ||||||||||| |||||||||||||||||||||| ||||
Sbjct: 87512 aagtggctcccccgcgccggcgactggatctgcaccggt 87474



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>emb|AL606616.3|OSJN00070 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060M15,
            complete sequence
          Length = 119918

 Score =  125 bits (63), Expect = 2e-25
 Identities = 110/125 (88%), Gaps = 3/125 (2%)
 Strand = Plus / Minus

                                                                        
Query: 50   ggttgcagtaacaataattatgcatccagaaagaactgcaagaagtgcaacctgcccaag 109
            ||||||||||||||||||||||||||||||||||||||||| || ||   |||||| |||
Sbjct: 3023 ggttgcagtaacaataattatgcatccagaaagaactgcaaaaaatgtggcctgccgaag 2964

                                                                        
Query: 110  gaggaagcagccatgccacaattatcaatgggaggaatg---atgccagcgtatgcagat 166
            ||||||||||| ||||||  ||||||||||| |||||||   |||||||| |||||| ||
Sbjct: 2963 gaggaagcagcaatgccagcattatcaatggcaggaatggccatgccagcttatgcaaat 2904

                 
Query: 167  tatat 171
            |||||
Sbjct: 2903 tatat 2899



 Score =  119 bits (60), Expect = 1e-23
 Identities = 159/192 (82%)
 Strand = Plus / Minus

                                                                        
Query: 217  tggcaatccagctatgcagcagcagctacttgcaaacgcaaactggccttatggggtggc 276
            ||||||| ||||| |||| ||||||||||||||||  |||||||||||||||| | ||||
Sbjct: 2844 tggcaattcagctttgcaacagcagctacttgcaagtgcaaactggccttatgcgttggc 2785

                                                                        
Query: 277  tgctagatatggtatgcaatcgtctctttggcagttcgccggcaacagcactaatcagtt 336
            || ||||||||| |||||| |  ||   ||||  || | |||||||| | | ||||||||
Sbjct: 2784 tggtagatatgggatgcaagctgctggctggccatttggcggcaacaacgcaaatcagtt 2725

                                                                        
Query: 337  tcaaggtgttccaaaggactggcgtagtggtgactggctctgcagctgtggattccataa 396
            |  ||  | |||||| ||||||||||| ||||| ||||| || ||||||||||| |||||
Sbjct: 2724 ttcagcggctccaaaagactggcgtagcggtgattggctttgtagctgtggatttcataa 2665

                        
Query: 397  ctactcatctcg 408
            ||||||||||||
Sbjct: 2664 ctactcatctcg 2653



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                        
Query: 490  ttcaacattaggtaataagcggttggcatcagaggagcttgctaatgactgggataataa 549
            |||| ||||||| | |||||||||||| |||||||| ||||| ||||| |||||||| ||
Sbjct: 1607 ttcagcattaggaactaagcggttggcgtcagaggaacttgccaatgaatgggataacaa 1548

                                                 
Query: 550  aaggctgaacccaggaaatgctaattatccactttca 586
            |||||| || ||||||||||| |  ||||||||||||
Sbjct: 1547 aaggcttaatccaggaaatgcaagctatccactttca 1511



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                        
Query: 412  tcagtgtaaagagtgtaatgcacctgtcccatcaggcatggcctctacaaccatgaaatc 471
            |||||||||| |||||| ||| ||||| |||||||||||  |||| ||||| |||||| |
Sbjct: 2156 tcagtgtaaacagtgtagtgctcctgtaccatcaggcattccctccacaacaatgaaaac 2097

                                 
Query: 472  cacaggagcagatagttcttc 492
            ||||| | |||||| ||||||
Sbjct: 2096 cacagtaccagatacttcttc 2076



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                   
Query: 14   aagtggctcccacgcgccggcgactggatctgcaacggt 52
            ||||||||||| |||||||||||||||||||||| ||||
Sbjct: 3924 aagtggctcccccgcgccggcgactggatctgcaccggt 3886



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>gb|AY104843.1| Zea mays PCO120044 mRNA sequence
          Length = 926

 Score =  115 bits (58), Expect = 2e-22
 Identities = 106/122 (86%)
 Strand = Plus / Plus

                                                                       
Query: 495 cattaggtaataagcggttggcatcagaggagcttgctaatgactgggataataaaaggc 554
           ||||||| | |||||||||||| |||||||| || || ||||||||||||||||||||||
Sbjct: 187 cattaggaactaagcggttggcttcagaggacctggccaatgactgggataataaaaggc 246

                                                                       
Query: 555 tgaacccaggaaatgctaattatccactttcaacagcaggctcagataatttatttatgg 614
           | || ||||||||||  ||||||||||||||||||| ||   || ||||||||||| |||
Sbjct: 247 taaatccaggaaatgacaattatccactttcaacaggagctgcaaataatttatttttgg 306

             
Query: 615 gt 616
           ||
Sbjct: 307 gt 308



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>gb|AC138453.8| Medicago truncatula clone mth2-20m14, complete sequence
          Length = 144639

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 50    ggttgcagtaacaataattatgcatccagaaagaactgcaagaa 93
             ||||||| |||||| ||||||||||| ||| |||| ||||||||
Sbjct: 82439 ggttgcactaacaacaattatgcatcaagagagaagtgcaagaa 82482



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>gb|AC107905.5| Homo sapiens chromosome 15, clone CTD-2026J24, complete sequence
          Length = 175627

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 556    gaacccaggaaatgctaattat 577
              ||||||||||||||||||||||
Sbjct: 115581 gaacccaggaaatgctaattat 115602



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>emb|AL772167.13| Mouse DNA sequence from clone RP23-203A12 on chromosome 4, complete
             sequence
          Length = 205104

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 219   gcaatccagctatgcagcagcagcta 244
             |||||||||| |||||||||||||||
Sbjct: 93423 gcaatccagcaatgcagcagcagcta 93398



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>ref|NM_127353.1| Arabidopsis thaliana binding AT2G17975 mRNA, complete cds
          Length = 807

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 31  cggcgactggatctgcaacggttgcagtaacaataattatgcatc 75
           |||||| ||||||||||  ||||| | |||||| |||||||||||
Sbjct: 147 cggcgattggatctgcactggttgtactaacaacaattatgcatc 191



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>gb|BT015844.1| Arabidopsis thaliana At2g17975 gene, complete cds
          Length = 807

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 31  cggcgactggatctgcaacggttgcagtaacaataattatgcatc 75
           |||||| ||||||||||  ||||| | |||||| |||||||||||
Sbjct: 147 cggcgattggatctgcactggttgtactaacaacaattatgcatc 191



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>gb|BT015337.1| Arabidopsis thaliana At2g17975 gene, complete cds
          Length = 901

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 31  cggcgactggatctgcaacggttgcagtaacaataattatgcatc 75
           |||||| ||||||||||  ||||| | |||||| |||||||||||
Sbjct: 182 cggcgattggatctgcactggttgtactaacaacaattatgcatc 226



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>gb|AC150707.3| Bos taurus  BAC CH240-275I24 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 153353

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    agcactaatcagtttcaagg 342
              ||||||||||||||||||||
Sbjct: 152940 agcactaatcagtttcaagg 152921



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>gb|AC126959.6| Rattus norvegicus 8 BAC CH230-10P12 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 212481

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   ctggctataagatgaacttt 217
             ||||||||||||||||||||
Sbjct: 62834 ctggctataagatgaacttt 62853



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>gb|AC147974.2| Pan troglodytes BAC clone RP43-67J16 from 7, complete sequence
          Length = 170261

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   tccagctatgcagcagcagc 242
             ||||||||||||||||||||
Sbjct: 94330 tccagctatgcagcagcagc 94349



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 21       tcccacgcgccggcgactgg 40
                ||||||||||||||||||||
Sbjct: 10230829 tcccacgcgccggcgactgg 10230810



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>gb|AY071327.1| Drosophila melanogaster RE34768 full insert cDNA
          Length = 2558

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 600  ataatttatttatgggtcaa 619
            ||||||||||||||||||||
Sbjct: 2528 ataatttatttatgggtcaa 2509



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>gb|AC113977.16| Mus musculus chromosome 1, clone RP23-161E13, complete sequence
          Length = 235738

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 444    caggcatggcctctacaacc 463
              ||||||||||||||||||||
Sbjct: 211503 caggcatggcctctacaacc 211522



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>gb|AC122411.4| Mus musculus BAC clone RP24-143P19 from chromosome 1, complete sequence
          Length = 182658

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 444   caggcatggcctctacaacc 463
             ||||||||||||||||||||
Sbjct: 61879 caggcatggcctctacaacc 61898



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>ref|XM_647804.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (101.t00009)
            partial mRNA
          Length = 2592

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 135  caatgggaggaatgatgcca 154
            ||||||||||||||||||||
Sbjct: 2081 caatgggaggaatgatgcca 2100



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 135  caatgggaggaatgatgcca 154
            ||||||||||||||||||||
Sbjct: 1517 caatgggaggaatgatgcca 1536



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 135 caatgggaggaatgatgcca 154
           ||||||||||||||||||||
Sbjct: 797 caatgggaggaatgatgcca 816



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>ref|XM_504742.1| Yarrowia lipolytica CLIB122, YALI0E33715g predicted mRNA
          Length = 2355

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 42  tctgcaacggttgcagtaac 61
           ||||||||||||||||||||
Sbjct: 995 tctgcaacggttgcagtaac 976



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>emb|AL359893.16| Human DNA sequence from clone RP11-35N6 on chromosome 9 Contains the 3'
             end of a novel gene (FLJ20300), a bile acid Coenzyme A
             amino acid N-acyltransferase (BAAT) pseudogene, a RINZF
             zinc finger protein pseudogene, the BAAT gene for bile
             acid Coenzyme A amino acid N-acyltransferase (glycine
             N-choloyltransferase) and two novel pseudogenes, complete
             sequence
          Length = 146627

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 438   tcccatcaggcatggcctct 457
             ||||||||||||||||||||
Sbjct: 27623 tcccatcaggcatggcctct 27604



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>emb|AL133340.27| Human DNA sequence from clone RP11-204H22 on chromosome 20 Contains
             part of a novel gene, ESTs, STSs and GSSs, complete
             sequence
          Length = 138442

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   gcagcagcagctacttgcaa 251
             ||||||||||||||||||||
Sbjct: 86275 gcagcagcagctacttgcaa 86256



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>gb|AC150683.3| Mus musculus BAC clone RP23-435E16 from chromosome 7, complete sequence
          Length = 198646

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 580   actttcaacagcaggctcag 599
             ||||||||||||||||||||
Sbjct: 77554 actttcaacagcaggctcag 77573



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>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0045E22, from chromosome 3, complete sequence
          Length = 160920

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    tcccacgcgccggcgactgg 40
             ||||||||||||||||||||
Sbjct: 92242 tcccacgcgccggcgactgg 92223



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>gb|AC090512.3|AC090512 Homo sapiens chromosome 15 clone RP11-134K12 map 15q21.1, complete
             sequence
          Length = 161737

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   atgggaggaatgatgccagc 156
             ||||||||||||||||||||
Sbjct: 68034 atgggaggaatgatgccagc 68015



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 21       tcccacgcgccggcgactgg 40
                ||||||||||||||||||||
Sbjct: 10228930 tcccacgcgccggcgactgg 10228911



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>ref|NM_001015400.1| Drosophila melanogaster CG40410-PA.3 (CG40410), mRNA
          Length = 2546

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 600  ataatttatttatgggtcaa 619
            ||||||||||||||||||||
Sbjct: 2528 ataatttatttatgggtcaa 2509



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>dbj|AK069285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011N22, full
           insert sequence
          Length = 2590

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 21  tcccacgcgccggcgactgg 40
           ||||||||||||||||||||
Sbjct: 176 tcccacgcgccggcgactgg 157



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>gb|CP000220.1| Drosophila melanogaster genomic scaffold 211000022280793
          Length = 328417

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 600    ataatttatttatgggtcaa 619
              ||||||||||||||||||||
Sbjct: 178432 ataatttatttatgggtcaa 178451



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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 42      tctgcaacggttgcagtaac 61
               ||||||||||||||||||||
Sbjct: 4003196 tctgcaacggttgcagtaac 4003215


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,199,269
Number of Sequences: 3902068
Number of extensions: 6199269
Number of successful extensions: 109274
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109052
Number of HSP's gapped (non-prelim): 222
length of query: 627
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 604
effective length of database: 17,143,297,704
effective search space: 10354551813216
effective search space used: 10354551813216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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