Clone Information

BLAST Search Result

Clone Name	bags33a18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AB055152.1\| Triticum aestivum mrpl11 mRNA for mitochondrial ...	728	0.0
2	ref\|NM_196922.1\| Oryza sativa (japonica cultivar-group) putative...	278	2e-71
3	gb\|AC022457.8\| Oryza sativa chromosome 10 BAC OSJNBa0006L06 geno...	278	2e-71
4	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	278	2e-71
5	dbj\|AK063749.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	278	2e-71
6	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	278	2e-71
7	gb\|CP000009.1\| Gluconobacter oxydans 621H, complete genome	44	0.58
8	gb\|CP000057.1\| Haemophilus influenzae strain 86-028NP, complete ...	42	2.3
9	ref\|XM_848910.1\| PREDICTED: Canis familiaris similar to Alpha-2-...	42	2.3
10	gb\|AC117671.8\| Mus musculus chromosome 10, clone RP23-389G8, com...	42	2.3
11	emb\|X78436.1\|BTA2A B.taurus mRNA for alpha-2-antiplasmin	42	2.3
12	gb\|AF367015.1\| Streptococcus pyogenes serum opacity factor VT37....	42	2.3
13	gb\|AF367011.1\| Streptococcus pyogenes serum opacity factor VT3.2...	42	2.3
14	ref\|NM_174670.2\| Bos taurus serine (or cysteine) proteinase inhi...	42	2.3
15	gb\|AF181974.1\|AF181974 Streptococcus pyogenes serum opacity fact...	42	2.3
16	gb\|AC158183.2\| Selaginella moellendorffii clone JGIASXY-5D8, com...	42	2.3
17	gb\|AF191035.1\|AF191035 Streptococcus pyogenes strain SS1457 seru...	42	2.3
18	gb\|AF177977.1\|AF177977 Streptococcus pyogenes serum opacity fact...	42	2.3
19	gb\|AF139752.2\|AF139752 Streptococcus pyogenes serum opacity fact...	42	2.3
20	gb\|AF174430.1\|AF174430 Streptococcus pyogenes serum opacity fact...	42	2.3
21	gb\|AF138798.3\|AF138798 Streptococcus pyogenes serum opacity fact...	42	2.3
22	gb\|AF138804.2\|AF138804 Streptococcus pyogenes serum opacity fact...	42	2.3
23	gb\|L42023.1\| Haemophilus influenzae Rd KW20, complete genome	42	2.3
24	gb\|AC113474.18\| Mus musculus chromosome 5, clone RP23-297J17, co...	40	9.1
25	ref\|XM_369393.1\| Magnaporthe grisea 70-15 chromosome III hypothe...	40	9.1
26	ref\|XM_322452.1\| Neurospora crassa OR74A predicted protein (NCU0...	40	9.1
27	ref\|XM_329590.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.1
28	ref\|XM_952160.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.1
29	ref\|XM_957935.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.1
30	emb\|BX950851.1\| Erwinia carotovora subsp. atroseptica SCRI1043, ...	40	9.1
31	gb\|DQ023263.1\| Macaca mulatta 17beta-hydroxysteroid dehydrogenas...	40	9.1
32	gb\|AC009520.16\| Homo sapiens 3 BAC RP11-392H18 (Roswell Park Can...	40	9.1
33	gb\|AC074331.2\|AC074331 Homo sapiens chromosome 19, BAC CTC-204F2...	40	9.1
34	gb\|AY120873.1\| Streptococcus pyogenes fibronectin-binding protei...	40	9.1
35	ref\|XM_222155.3\| PREDICTED: Rattus norvegicus phosphatidylinosit...	40	9.1
36	gb\|AC138470.1\| Homo sapiens chromosome 19 clone CTC-204F22, comp...	40	9.1
37	gb\|AY156910.1\| Trichoderma sp. SY xylanase mRNA, complete cds	40	9.1
38	gb\|AC021092.1\|AC021092 Homo sapiens chromosome 19, cosmid R29827...	40	9.1
39	dbj\|AP006840.1\| Symbiobacterium thermophilum IAM 14863 DNA, comp...	40	9.1

>dbj|AB055152.1| Triticum aestivum mrpl11 mRNA for mitochondrial ribosomal protein
           L11, complete cds
          Length = 956

 Score =  728 bits (367), Expect = 0.0
 Identities = 472/506 (93%), Gaps = 2/506 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  ggacgacgtacacgcagatctgctaaaggag--caacatggcaacacttaaagatgtggc 69
           ||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||
Sbjct: 112 ggacgacgtacacgcaggtctgctaaaggagagcaacatggcaacacttaaagatgtggc 171

                                                                       
Query: 70  aacacggaaacctattctagcaacaatccgcctcctggttcctgctggagcagcccgccc 129
           ||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct: 172 aacgcggaagcctattctagcgacaatccgcctcctagttcctgctggagcagcccgtcc 231

                                                                       
Query: 130 ggcaccacctgtaggaccagctctgggtttctacaggctcaatctgatggcattctgcaa 189
            ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 232 cgcaccccctgtcggaccagctctgggtttctacaggctcaatctgatggctttctgcaa 291

                                                                       
Query: 190 ggatttcaacgccaggacgcagaagtacaaggcagagactccgatgcaagtcactctgac 249
           ||||||||| || ||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct: 292 ggatttcaatgcaaggacacagaagtacaaggcggagactccgatgcaagtcacgctgac 351

                                                                       
Query: 250 cgcctacaaggacagcaccttcgagtttgtggtcaagtcgccatcggtctcatggttcct 309
            ||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||
Sbjct: 352 tgcctacaaggacagcacttttgagtttgtagtcaagtcgccctcggtctcatggttcct 411

                                                                       
Query: 310 caagaaagcggcgggcatcgagagcgcgagcagccgtccgggccacaacatggtgacgtc 369
           |||||||||||||||| ||||||  || |||||||| || ||||||||||||||||||||
Sbjct: 412 caagaaagcggcgggcgtcgagacggcaagcagccggccaggccacaacatggtgacgtc 471

                                                                       
Query: 370 cctctcgctccgccatgtctatgagatcgcaaagctgaagcagtccgacccgttctgcaa 429
           ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct: 472 cctctcgctccgccatgtctacgagatcgcgaagctgaagcagtcagacccgttctgcaa 531

                                                                       
Query: 430 gcacatgtccctcgaggccctgtgcaagtccatcatcggcacggccaagtccatgggcat 489
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gcacatgtcgctcgaggccctgtgcaagtccatcatcggcacggccaagtccatgggcat 591

                                     
Query: 490 tgaaatcgtgaaggatctctgaccgg 515
            |||||||| ||||||||||||||||
Sbjct: 592 cgaaatcgtcaaggatctctgaccgg 617

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>ref|NM_196922.1| Oryza sativa (japonica cultivar-group) putative ribosomal protein
           L11 (OSJNBa0006L06.28), mRNA
          Length = 468

 Score =  278 bits (140), Expect = 2e-71
 Identities = 338/404 (83%)
 Strand = Plus / Plus

                                                                       
Query: 89  gcaacaatccgcctcctggttcctgctggagcagcccgcccggcaccacctgtaggacca 148
           ||||||||||||||  | ||||| ||||| || |||||||| || ||||| || || |||
Sbjct: 46  gcaacaatccgccttatcgttccagctggtgccgcccgccctgcgccaccagttggtcca 105

                                                                       
Query: 149 gctctgggtttctacaggctcaatctgatggcattctgcaaggatttcaacgccaggacg 208
           || || |||||||||||||| || |||||||| ||||||||||||||||| |||||||| 
Sbjct: 106 gcgctaggtttctacaggctgaacctgatggcgttctgcaaggatttcaatgccaggact 165

                                                                       
Query: 209 cagaagtacaaggcagagactccgatgcaagtcactctgaccgcctacaaggacagcacc 268
           |||||||| |||||||| ||||| ||||| || ||  | || ||||||||||||||||| 
Sbjct: 166 cagaagtataaggcagaaactcctatgcaggttaccttaactgcctacaaggacagcaca 225

                                                                       
Query: 269 ttcgagtttgtggtcaagtcgccatcggtctcatggttcctcaagaaagcggcgggcatc 328
           ||||||||||| |||||||| ||||| |||||||||||||||||||| || || || || 
Sbjct: 226 ttcgagtttgtagtcaagtcaccatctgtctcatggttcctcaagaaggccgccgggatt 285

                                                                       
Query: 329 gagagcgcgagcagccgtccgggccacaacatggtgacgtccctctcgctccgccatgtc 388
           ||||  || ||| ||||||| || ||||   | ||| | ||||| || || |||||||||
Sbjct: 286 gagacagccagcggccgtccagggcacactgtagtgtcatccctttcacttcgccatgtc 345

                                                                       
Query: 389 tatgagatcgcaaagctgaagcagtccgacccgttctgcaagcacatgtccctcgaggcc 448
           || |||||||| ||  ||||||| || || || | ||||||||||||||| |||||||| 
Sbjct: 346 tacgagatcgcgaaattgaagcaatctgatccctactgcaagcacatgtcactcgaggcg 405

                                                       
Query: 449 ctgtgcaagtccatcatcggcacggccaagtccatgggcattga 492
           ||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 406 ctgtgcaagtcaatcattggcacagccaactccatgggcattga 449

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>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete
             sequence
          Length = 162339

 Score =  278 bits (140), Expect = 2e-71
 Identities = 338/404 (83%)
 Strand = Plus / Minus

                                                                         
Query: 89    gcaacaatccgcctcctggttcctgctggagcagcccgcccggcaccacctgtaggacca 148
             ||||||||||||||  | ||||| ||||| || |||||||| || ||||| || || |||
Sbjct: 31769 gcaacaatccgccttatcgttccagctggtgccgcccgccctgcgccaccagttggtcca 31710

                                                                         
Query: 149   gctctgggtttctacaggctcaatctgatggcattctgcaaggatttcaacgccaggacg 208
             || || |||||||||||||| || |||||||| ||||||||||||||||| |||||||| 
Sbjct: 31709 gcgctaggtttctacaggctgaacctgatggcgttctgcaaggatttcaatgccaggact 31650

                                                                         
Query: 209   cagaagtacaaggcagagactccgatgcaagtcactctgaccgcctacaaggacagcacc 268
             |||||||| |||||||| ||||| ||||| || ||  | || ||||||||||||||||| 
Sbjct: 31649 cagaagtataaggcagaaactcctatgcaggttaccttaactgcctacaaggacagcaca 31590

                                                                         
Query: 269   ttcgagtttgtggtcaagtcgccatcggtctcatggttcctcaagaaagcggcgggcatc 328
             ||||||||||| |||||||| ||||| |||||||||||||||||||| || || || || 
Sbjct: 31589 ttcgagtttgtagtcaagtcaccatctgtctcatggttcctcaagaaggccgccgggatt 31530

                                                                         
Query: 329   gagagcgcgagcagccgtccgggccacaacatggtgacgtccctctcgctccgccatgtc 388
             ||||  || ||| ||||||| || ||||   | ||| | ||||| || || |||||||||
Sbjct: 31529 gagacagccagcggccgtccagggcacactgtagtgtcatccctttcacttcgccatgtc 31470

                                                                         
Query: 389   tatgagatcgcaaagctgaagcagtccgacccgttctgcaagcacatgtccctcgaggcc 448
             || |||||||| ||  ||||||| || || || | ||||||||||||||| |||||||| 
Sbjct: 31469 tacgagatcgcgaaattgaagcaatctgatccctactgcaagcacatgtcactcgaggcg 31410

                                                         
Query: 449   ctgtgcaagtccatcatcggcacggccaagtccatgggcattga 492
             ||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 31409 ctgtgcaagtcaatcattggcacagccaactccatgggcattga 31366

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  278 bits (140), Expect = 2e-71
 Identities = 338/404 (83%)
 Strand = Plus / Minus

                                                                            
Query: 89       gcaacaatccgcctcctggttcctgctggagcagcccgcccggcaccacctgtaggacca 148
                ||||||||||||||  | ||||| ||||| || |||||||| || ||||| || || |||
Sbjct: 16687252 gcaacaatccgccttatcgttccagctggtgccgcccgccctgcgccaccagttggtcca 16687193

                                                                            
Query: 149      gctctgggtttctacaggctcaatctgatggcattctgcaaggatttcaacgccaggacg 208
                || || |||||||||||||| || |||||||| ||||||||||||||||| |||||||| 
Sbjct: 16687192 gcgctaggtttctacaggctgaacctgatggcgttctgcaaggatttcaatgccaggact 16687133

                                                                            
Query: 209      cagaagtacaaggcagagactccgatgcaagtcactctgaccgcctacaaggacagcacc 268
                |||||||| |||||||| ||||| ||||| || ||  | || ||||||||||||||||| 
Sbjct: 16687132 cagaagtataaggcagaaactcctatgcaggttaccttaactgcctacaaggacagcaca 16687073

                                                                            
Query: 269      ttcgagtttgtggtcaagtcgccatcggtctcatggttcctcaagaaagcggcgggcatc 328
                ||||||||||| |||||||| ||||| |||||||||||||||||||| || || || || 
Sbjct: 16687072 ttcgagtttgtagtcaagtcaccatctgtctcatggttcctcaagaaggccgccgggatt 16687013

                                                                            
Query: 329      gagagcgcgagcagccgtccgggccacaacatggtgacgtccctctcgctccgccatgtc 388
                ||||  || ||| ||||||| || ||||   | ||| | ||||| || || |||||||||
Sbjct: 16687012 gagacagccagcggccgtccagggcacactgtagtgtcatccctttcacttcgccatgtc 16686953

                                                                            
Query: 389      tatgagatcgcaaagctgaagcagtccgacccgttctgcaagcacatgtccctcgaggcc 448
                || |||||||| ||  ||||||| || || || | ||||||||||||||| |||||||| 
Sbjct: 16686952 tacgagatcgcgaaattgaagcaatctgatccctactgcaagcacatgtcactcgaggcg 16686893

                                                            
Query: 449      ctgtgcaagtccatcatcggcacggccaagtccatgggcattga 492
                ||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 16686892 ctgtgcaagtcaatcattggcacagccaactccatgggcattga 16686849

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>dbj|AK063749.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-G08, full
           insert sequence
          Length = 849

 Score =  278 bits (140), Expect = 2e-71
 Identities = 338/404 (83%)
 Strand = Plus / Plus

                                                                       
Query: 89  gcaacaatccgcctcctggttcctgctggagcagcccgcccggcaccacctgtaggacca 148
           ||||||||||||||  | ||||| ||||| || |||||||| || ||||| || || |||
Sbjct: 150 gcaacaatccgccttatcgttccagctggtgccgcccgccctgcgccaccagttggtcca 209

                                                                       
Query: 149 gctctgggtttctacaggctcaatctgatggcattctgcaaggatttcaacgccaggacg 208
           || || |||||||||||||| || |||||||| ||||||||||||||||| |||||||| 
Sbjct: 210 gcgctaggtttctacaggctgaacctgatggcgttctgcaaggatttcaatgccaggact 269

                                                                       
Query: 209 cagaagtacaaggcagagactccgatgcaagtcactctgaccgcctacaaggacagcacc 268
           |||||||| |||||||| ||||| ||||| || ||  | || ||||||||||||||||| 
Sbjct: 270 cagaagtataaggcagaaactcctatgcaggttaccttaactgcctacaaggacagcaca 329

                                                                       
Query: 269 ttcgagtttgtggtcaagtcgccatcggtctcatggttcctcaagaaagcggcgggcatc 328
           ||||||||||| |||||||| ||||| |||||||||||||||||||| || || || || 
Sbjct: 330 ttcgagtttgtagtcaagtcaccatctgtctcatggttcctcaagaaggccgccgggatt 389

                                                                       
Query: 329 gagagcgcgagcagccgtccgggccacaacatggtgacgtccctctcgctccgccatgtc 388
           ||||  || ||| ||||||| || ||||   | ||| | ||||| || || |||||||||
Sbjct: 390 gagacagccagcggccgtccagggcacactgtagtgtcatccctttcacttcgccatgtc 449

                                                                       
Query: 389 tatgagatcgcaaagctgaagcagtccgacccgttctgcaagcacatgtccctcgaggcc 448
           || |||||||| ||  ||||||| || || || | ||||||||||||||| |||||||| 
Sbjct: 450 tacgagatcgcgaaattgaagcaatctgatccctactgcaagcacatgtcactcgaggcg 509

                                                       
Query: 449 ctgtgcaagtccatcatcggcacggccaagtccatgggcattga 492
           ||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 510 ctgtgcaagtcaatcattggcacagccaactccatgggcattga 553

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  278 bits (140), Expect = 2e-71
 Identities = 338/404 (83%)
 Strand = Plus / Minus

                                                                            
Query: 89       gcaacaatccgcctcctggttcctgctggagcagcccgcccggcaccacctgtaggacca 148
                ||||||||||||||  | ||||| ||||| || |||||||| || ||||| || || |||
Sbjct: 16696292 gcaacaatccgccttatcgttccagctggtgccgcccgccctgcgccaccagttggtcca 16696233

                                                                            
Query: 149      gctctgggtttctacaggctcaatctgatggcattctgcaaggatttcaacgccaggacg 208
                || || |||||||||||||| || |||||||| ||||||||||||||||| |||||||| 
Sbjct: 16696232 gcgctaggtttctacaggctgaacctgatggcgttctgcaaggatttcaatgccaggact 16696173

                                                                            
Query: 209      cagaagtacaaggcagagactccgatgcaagtcactctgaccgcctacaaggacagcacc 268
                |||||||| |||||||| ||||| ||||| || ||  | || ||||||||||||||||| 
Sbjct: 16696172 cagaagtataaggcagaaactcctatgcaggttaccttaactgcctacaaggacagcaca 16696113

                                                                            
Query: 269      ttcgagtttgtggtcaagtcgccatcggtctcatggttcctcaagaaagcggcgggcatc 328
                ||||||||||| |||||||| ||||| |||||||||||||||||||| || || || || 
Sbjct: 16696112 ttcgagtttgtagtcaagtcaccatctgtctcatggttcctcaagaaggccgccgggatt 16696053

                                                                            
Query: 329      gagagcgcgagcagccgtccgggccacaacatggtgacgtccctctcgctccgccatgtc 388
                ||||  || ||| ||||||| || ||||   | ||| | ||||| || || |||||||||
Sbjct: 16696052 gagacagccagcggccgtccagggcacactgtagtgtcatccctttcacttcgccatgtc 16695993

                                                                            
Query: 389      tatgagatcgcaaagctgaagcagtccgacccgttctgcaagcacatgtccctcgaggcc 448
                || |||||||| ||  ||||||| || || || | ||||||||||||||| |||||||| 
Sbjct: 16695992 tacgagatcgcgaaattgaagcaatctgatccctactgcaagcacatgtcactcgaggcg 16695933

                                                            
Query: 449      ctgtgcaagtccatcatcggcacggccaagtccatgggcattga 492
                ||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 16695932 ctgtgcaagtcaatcattggcacagccaactccatgggcattga 16695889

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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 182    ttctgcaaggatttcaacgccaggacgcag 211
              ||||||||||| |||||||||| |||||||
Sbjct: 408603 ttctgcaaggagttcaacgccaagacgcag 408574

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>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome
          Length = 1913428

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 47      atggcaacacttaaagatgtggcaa 71
               ||||||||| |||||||||||||||
Sbjct: 1335499 atggcaacaattaaagatgtggcaa 1335475

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>ref|XM_848910.1| PREDICTED: Canis familiaris similar to Alpha-2-antiplasmin
           precursor (Alpha-2-plasmin inhibitor) (Alpha-2-PI)
           (Alpha-2-AP) (LOC611266), mRNA
          Length = 1610

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 104 ctggttcctgctggagcagcc 124
           |||||||||||||||||||||
Sbjct: 828 ctggttcctgctggagcagcc 848

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>gb|AC117671.8| Mus musculus chromosome 10, clone RP23-389G8, complete sequence
          Length = 189341

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 209    cagaagtacaaggcagagact 229
              |||||||||||||||||||||
Sbjct: 129136 cagaagtacaaggcagagact 129156

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>emb|X78436.1|BTA2A B.taurus mRNA for alpha-2-antiplasmin
          Length = 2216

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 104 ctggttcctgctggagcagcc 124
           |||||||||||||||||||||
Sbjct: 873 ctggttcctgctggagcagcc 893

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>gb|AF367015.1| Streptococcus pyogenes serum opacity factor VT37.1 gene, complete cds
          Length = 3048

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 241  cactctgaccgcctacaagga 261
            |||||||||||||||||||||
Sbjct: 2515 cactctgaccgcctacaagga 2495

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>gb|AF367011.1| Streptococcus pyogenes serum opacity factor VT3.2 gene, complete cds
          Length = 3069

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 241  cactctgaccgcctacaagga 261
            |||||||||||||||||||||
Sbjct: 2539 cactctgaccgcctacaagga 2519

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>ref|NM_174670.2| Bos taurus serine (or cysteine) proteinase inhibitor, clade F
           (alpha-2 antiplasmin, pigment epithelium derived
           factor), member 2 (SERPINF2), mRNA
          Length = 2216

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 104 ctggttcctgctggagcagcc 124
           |||||||||||||||||||||
Sbjct: 873 ctggttcctgctggagcagcc 893

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>gb|AF181974.1|AF181974 Streptococcus pyogenes serum opacity factor (sof63) gene, complete
            cds
          Length = 3650

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 241  cactctgaccgcctacaagga 261
            |||||||||||||||||||||
Sbjct: 2926 cactctgaccgcctacaagga 2906

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>gb|AC158183.2| Selaginella moellendorffii clone JGIASXY-5D8, complete sequence
          Length = 39479

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 176   atggcattctgcaaggatttcaacgccaggacg 208
             ||||| ||||||||||| | |||||||||||||
Sbjct: 33769 atggccttctgcaaggaatacaacgccaggacg 33737

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>gb|AF191035.1|AF191035 Streptococcus pyogenes strain SS1457 serum opacity factor precursor
            (sof1207) gene, partial cds
          Length = 2645

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 241  cactctgaccgcctacaagga 261
            |||||||||||||||||||||
Sbjct: 2509 cactctgaccgcctacaagga 2489

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>gb|AF177977.1|AF177977 Streptococcus pyogenes serum opacity factor precursor (sof1482) gene,
            partial cds
          Length = 2564

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 241  cactctgaccgcctacaagga 261
            |||||||||||||||||||||
Sbjct: 2446 cactctgaccgcctacaagga 2426

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>gb|AF139752.2|AF139752 Streptococcus pyogenes serum opacity factor precursor (sof3875) gene,
            partial cds
          Length = 2618

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 241  cactctgaccgcctacaagga 261
            |||||||||||||||||||||
Sbjct: 2500 cactctgaccgcctacaagga 2480

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>gb|AF174430.1|AF174430 Streptococcus pyogenes serum opacity factor precursor (sof9) gene,
            partial cds
          Length = 2768

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 241  cactctgaccgcctacaagga 261
            |||||||||||||||||||||
Sbjct: 2551 cactctgaccgcctacaagga 2531

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>gb|AF138798.3|AF138798 Streptococcus pyogenes serum opacity factor precursor (sof44) gene,
            partial cds
          Length = 2621

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 241  cactctgaccgcctacaagga 261
            |||||||||||||||||||||
Sbjct: 2503 cactctgaccgcctacaagga 2483

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>gb|AF138804.2|AF138804 Streptococcus pyogenes serum opacity factor precursor (sof61) gene,
            partial cds
          Length = 2597

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 241  cactctgaccgcctacaagga 261
            |||||||||||||||||||||
Sbjct: 2479 cactctgaccgcctacaagga 2459

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>gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome
          Length = 1830138

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 47      atggcaacacttaaagatgtggcaa 71
               ||||||||| |||||||||||||||
Sbjct: 1697612 atggcaacaattaaagatgtggcaa 1697636

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>gb|AC113474.18| Mus musculus chromosome 5, clone RP23-297J17, complete sequence
          Length = 219936

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    aggaccagctctgggtttct 161
              ||||||||||||||||||||
Sbjct: 143794 aggaccagctctgggtttct 143813

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>ref|XM_369393.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
           (MG06071.4) partial mRNA
          Length = 474

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 185 tgcaaggatttcaacgccaggacg 208
           |||||||| |||||||||||||||
Sbjct: 133 tgcaaggaattcaacgccaggacg 156

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>ref|XM_322452.1| Neurospora crassa OR74A predicted protein (NCU00367.1) partial mRNA
          Length = 2910

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 cgcagaagtacaaggcagag 226
           ||||||||||||||||||||
Sbjct: 653 cgcagaagtacaaggcagag 672

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>ref|XM_329590.1| Neurospora crassa OR74A hypothetical protein (NCU08546.1) partial
          mRNA
          Length = 804

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 36 aaaggagcaacatggcaaca 55
          ||||||||||||||||||||
Sbjct: 30 aaaggagcaacatggcaaca 49

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>ref|XM_952160.1| Neurospora crassa OR74A hypothetical protein (NCU00367.1) partial
           mRNA
          Length = 2910

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 cgcagaagtacaaggcagag 226
           ||||||||||||||||||||
Sbjct: 653 cgcagaagtacaaggcagag 672

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>ref|XM_957935.1| Neurospora crassa OR74A hypothetical protein (NCU08546.1) partial
          mRNA
          Length = 804

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 36 aaaggagcaacatggcaaca 55
          ||||||||||||||||||||
Sbjct: 30 aaaggagcaacatggcaaca 49

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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 598     ggtagggatgggatttatct 617
               ||||||||||||||||||||
Sbjct: 4019153 ggtagggatgggatttatct 4019134

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>gb|DQ023263.1| Macaca mulatta 17beta-hydroxysteroid dehydrogenase type 1 (HSD17B1)
             gene, complete cds
          Length = 40709

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   ggttcctgctggagcagccc 125
             ||||||||||||||||||||
Sbjct: 34371 ggttcctgctggagcagccc 34352

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>gb|AC009520.16| Homo sapiens 3 BAC RP11-392H18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 161517

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 511    accggtctggctggactagc 530
              ||||||||||||||||||||
Sbjct: 109918 accggtctggctggactagc 109937

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>gb|AC074331.2|AC074331 Homo sapiens chromosome 19, BAC CTC-204F22 (BC228680), complete
            sequence
          Length = 156321

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 586  atttgaaagaaaggtaggga 605
            ||||||||||||||||||||
Sbjct: 6987 atttgaaagaaaggtaggga 6968

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>gb|AY120873.1| Streptococcus pyogenes fibronectin-binding protein precursor (sfbX)
            gene, sfbX-92 allele, partial cds
          Length = 1881

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 240  tcactctgaccgcctacaaggaca 263
            ||||| ||||||||||||||||||
Sbjct: 1565 tcactttgaccgcctacaaggaca 1542

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>ref|XM_222155.3| PREDICTED: Rattus norvegicus phosphatidylinositol transfer protein,
            membrane-associated 2 (predicted) (Pitpnm2_predicted),
            mRNA
          Length = 5106

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 142  aggaccagctctgggtttct 161
            ||||||||||||||||||||
Sbjct: 3170 aggaccagctctgggtttct 3151

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>gb|AC138470.1| Homo sapiens chromosome 19 clone CTC-204F22, complete sequence
          Length = 156312

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 586    atttgaaagaaaggtaggga 605
              ||||||||||||||||||||
Sbjct: 149326 atttgaaagaaaggtaggga 149345

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>gb|AY156910.1| Trichoderma sp. SY xylanase mRNA, complete cds
          Length = 841

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 457 gtccatcatcggcacggcca 476
           ||||||||||||||||||||
Sbjct: 527 gtccatcatcggcacggcca 546

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>gb|AC021092.1|AC021092 Homo sapiens chromosome 19, cosmid R29827, complete sequence
          Length = 38897

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 586   atttgaaagaaaggtaggga 605
             ||||||||||||||||||||
Sbjct: 30312 atttgaaagaaaggtaggga 30293

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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 459     ccatcatcggcacggccaag 478
               ||||||||||||||||||||
Sbjct: 1830203 ccatcatcggcacggccaag 1830222


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,813,873
Number of Sequences: 3902068
Number of extensions: 4813873
Number of successful extensions: 76092
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75884
Number of HSP's gapped (non-prelim): 207
length of query: 667
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 644
effective length of database: 17,143,297,704
effective search space: 11040283721376
effective search space used: 11040283721376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result