ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags32l16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL18_MYCGE (P47413) 50S ribosomal protein L18 30 7.1
2HPLN2_HUMAN (Q9GZV7) Hyaluronan and proteoglycan link protein 2 ... 29 9.3
3CRUM2_HUMAN (Q5IJ48) Crumbs homolog 2 precursor (Crumbs-like pro... 29 9.3

>RL18_MYCGE (P47413) 50S ribosomal protein L18|
          Length = 115

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -2

Query: 365 KVRRVDMDTRVVILPYIESTYWSSHSWLYTKRCKLTLDEMIQLPLSTLNKGGAGL 201
           K+R  +++ RVV++        S  +W ++K   LT    +QL L   NK  A L
Sbjct: 17  KIRLTNLNNRVVLIVIKSLKNISVQAWDFSKNVVLTSSSSLQLKLKNGNKENAKL 71



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>HPLN2_HUMAN (Q9GZV7) Hyaluronan and proteoglycan link protein 2 precursor|
           (Brain link protein 1)
          Length = 340

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 83  PCCYGLPNPGDSSFMFSRP--GAWHSSCFCSS 172
           P C GLP+PG  SF F RP   A+ + C+  +
Sbjct: 309 PRCGGLPDPGVRSFGFPRPQQAAYGTYCYAEN 340



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>CRUM2_HUMAN (Q5IJ48) Crumbs homolog 2 precursor (Crumbs-like protein 2)|
          Length = 1285

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 146 WHSSCFCSSLCTANGPLCLAPPHLCLELRVVVESSRPG*ACSALCI 283
           WH  C  + LC A+GP+ LA       L   + S++ G A  A C+
Sbjct: 536 WHEGC-PARLCVASGPVALASTASATPLPAGISSAQLGDATFAGCL 580


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,322,434
Number of Sequences: 219361
Number of extensions: 1629222
Number of successful extensions: 3958
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3958
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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