>RF2B_ORYSA (Q6S4P4) Transcription factor RF2b|
          Length = 329

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = +2

Query: 65  TILTVGNSHLKQRIAALAQDKLFKDAHQEALKEEIERLR 181
           T L+  N+ LK R+ A+ Q    +DA  +ALK+E+ERL+
Sbjct: 186 TGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLK 224

>POF21_ARATH (Q04088) Probable transcription factor PosF21 (AtbZIP59)|
          Length = 398

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +2

Query: 71  LTVGNSHLKQRIAALAQDKLFKDAHQEALKEEIERLR 181
           LTV N+ LK R+  + Q    +D   EALKEEI+ L+
Sbjct: 257 LTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLK 293

>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 28/93 (30%), Positives = 37/93 (39%)
 Frame = +1

Query: 46  PSWIAADDPHRRQQPPQAADRGSGAGQAFQGRSSGGAQGRDREAAAGVPAAEPQDVVXXX 225
           P W+    P    Q  QA   G+ A   FQG ++G    + R AAAG   A+PQ      
Sbjct: 424 PRWVPQVRPPAAIQGVQA---GAAAAGGFQG-TAGAVPTQFRSAAAGARGAQPQ----VQ 475

Query: 226 XXXXXXXAATCARGEGAHELAERSWHAPSATPP 324
                  AA   R  GA  +  +   AP+   P
Sbjct: 476 GTHAAAAAANNMRNTGARAITGQQTAAPNMQIP 508

>ALB3_MAIZE (P10593) Albumin b-32 protein (EC 3.2.2.22) (Opaque-6 protein)|
           (rRNA N-glycosidase)
          Length = 303

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 4   SDEGTRCPCCLLGW-PS-WIAADDPHRRQQPPQAADRGSGAGQAFQGRSSGGAQGRDREA 177
           S  GTR       W PS W A DD  R++   +  D  +G G    G +   A     E 
Sbjct: 126 SAAGTRTSSATRVWRPSPWAARDDQGRQRPGEEEEDGDTGGG----GGADADADAGGAEL 181

Query: 178 AAGVPAAEPQ 207
           AA   AA+PQ
Sbjct: 182 AAAAAAADPQ 191

>UBP42_HUMAN (Q9H9J4) Ubiquitin carboxyl-terminal hydrolase 42 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 42)
           (Ubiquitin-specific-processing protease 42)
           (Deubiquitinating enzyme 42)
          Length = 1325

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 19/74 (25%), Positives = 26/74 (35%)
 Frame = +1

Query: 106 RGSGAGQAFQGRSSGGAQGRDREAAAGVPAAEPQDVVXXXXXXXXXXAATCARGEGAHEL 285
           +GS    +  G   G  + RD E   G PAAE  +             A   R  G    
Sbjct: 727 KGSTDEMSAPGAERGPPEDRDAEPQPGSPAAESLEEPDAAAGLSSTKKAPPPRDPGTPAT 786

Query: 286 AERSWHAPSATPPQ 327
            E +W A +  P +
Sbjct: 787 KEGAWEAMAVAPEE 800


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,833,199
Number of Sequences: 219361
Number of extensions: 1295143
Number of successful extensions: 4855
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4829
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)