Clone Information

BLAST Search Result

Clone Name	bags33a04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	YUY1_CAEEL (P54073) Hypothetical protein F44G4.1 in chromosome II	172	4e-43
2	RPF1_XENLA (Q8AVP1) Ribosome production factor 1 (Ribosome bioge...	171	1e-42
3	RPF1_DROME (Q9VKB4) Probable ribosome production factor 1 (Ribos...	166	4e-41
4	RPF1_PONPY (Q5R631) Ribosome production factor 1 (Ribosome bioge...	165	8e-41
5	RPF1_HUMAN (Q9H9Y2) Ribosome production factor 1 (Ribosome bioge...	165	8e-41
6	RPF1_BRARE (Q6IQU6) Ribosome production factor 1 (Ribosome bioge...	164	1e-40
7	RPF1_MOUSE (Q7TND5) Ribosome production factor 1 (Ribosome bioge...	163	2e-40
8	RPF1_RAT (Q5RJS9) Ribosome production factor 1 (Ribosome biogene...	163	2e-40
9	RPF1_YEAST (P38805) Ribosome production factor 1 (Ribosome bioge...	153	3e-37
10	YDS4_SCHPO (O14180) Hypothetical protein C4F8.04 in chromosome I	138	8e-33
11	YHPK_CAEEL (O62518) Hypothetical protein ZK795.3 in chromosome IV	120	2e-27
12	IMP4_SCHPO (O13823) U3 small nucleolar ribonucleoprotein protein...	118	1e-26
13	IMP4_RAT (Q5PQR5) U3 small nucleolar ribonucleoprotein protein I...	113	4e-25
14	IMP4_PONPY (Q5R947) U3 small nucleolar ribonucleoprotein protein...	113	4e-25
15	IMP4_MOUSE (Q8VHZ7) U3 small nucleolar ribonucleoprotein protein...	113	4e-25
16	IMP4_HUMAN (Q96G21) U3 small nucleolar ribonucleoprotein protein...	113	4e-25
17	IMP4_CANGA (Q6FNN7) U3 small nucleolar ribonucleoprotein protein...	112	5e-25
18	IMP4_ASHGO (Q755T8) U3 small nucleolar ribonucleoprotein protein...	108	7e-24
19	IMP4_YEAST (P53941) U3 small nucleolar ribonucleoprotein protein...	108	9e-24
20	IMP4_YARLI (Q6C804) U3 small nucleolar ribonucleoprotein protein...	99	9e-21
21	IMP4_DEBHA (Q6BYD9) U3 small nucleolar ribonucleoprotein protein...	98	1e-20
22	YDD3_SCHPO (O14206) Hypothetical protein C1B9.03c in chromosome I	41	0.002
23	PPAN_DROME (Q9VDE5) Protein Peter pan	31	1.8
24	ENGA_RICCN (Q92GU2) GTP-binding protein engA	31	1.8
25	RNA14_YEAST (P25298) mRNA 3'-end processing protein RNA14	31	2.4
26	BRIX_SULTO (Q975H1) Probable brix-domain ribosomal biogenesis pr...	30	3.1
27	SSF2_YEAST (Q12153) Ribosome biogenesis protein SSF2	30	4.1
28	POLN_SPDV (Q8JJX1) Nonstructural polyprotein (Polyprotein nsP123...	30	4.1
29	SSF1_YEAST (P38789) Ribosome biogenesis protein SSF1	30	5.3
30	MCM6_SCHPO (P49731) DNA replication licensing factor mcm6 (Minic...	29	7.0
31	NOSD_PSEST (P19843) Copper-binding periplasmic protein precursor	29	7.0
32	ENGA_RICPR (Q9ZCP6) GTP-binding protein engA	29	9.1

>YUY1_CAEEL (P54073) Hypothetical protein F44G4.1 in chromosome II|
          Length = 384

 Score =  172 bits (437), Expect = 4e-43
 Identities = 78/138 (56%), Positives = 100/138 (72%)
 Frame = +1

Query: 19  FIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGPT 198
           F  EL + IPN++   R    LK I+E A  REFT ++VVH +R++P+ ++  +LPEGPT
Sbjct: 194 FCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPT 253

Query: 199 AHFKLSKLVLRKDIKNHGNPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNFRGRRVV 378
           A+FK++ L   +D+K  G  TSH PE++LNNF TRLGH + RM+  LFP DP F GRRVV
Sbjct: 254 AYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVV 313

Query: 379 TFHNQRDYIFFRHHRYIF 432
           TFHNQRDYIFFRHHRY F
Sbjct: 314 TFHNQRDYIFFRHHRYEF 331

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>RPF1_XENLA (Q8AVP1) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 343

 Score =  171 bits (433), Expect = 1e-42
 Identities = 77/144 (53%), Positives = 108/144 (75%), Gaps = 1/144 (0%)
 Frame = +1

Query: 4   GRGPAFIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINL 183
           GR   F ++L  +IPN+    R    LKKI+    +R++T ++V++ +R+ P+ L++ +L
Sbjct: 148 GRSVRFTEQLSSIIPNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHL 207

Query: 184 PEGPTAHFKLSKLVLRKDIKNHGN-PTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNF 360
           P+GPTAHFK+S + LRK++K  G  PT HKPE++LNNFTTRLGH +GRM  SL+P DP+F
Sbjct: 208 PDGPTAHFKISNVRLRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHF 267

Query: 361 RGRRVVTFHNQRDYIFFRHHRYIF 432
            GR+V TFHNQRDYIFFR+HRY+F
Sbjct: 268 VGRQVATFHNQRDYIFFRYHRYLF 291

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>RPF1_DROME (Q9VKB4) Probable ribosome production factor 1 (Ribosome biogenesis|
           protein RPF1)
          Length = 394

 Score =  166 bits (420), Expect = 4e-41
 Identities = 81/136 (59%), Positives = 100/136 (73%), Gaps = 1/136 (0%)
 Frame = +1

Query: 28  ELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGPTAHF 207
           EL ++ PNA    R    +KKI + A   EFT V++V+ +RR+P+ LL+I+LP GPTAHF
Sbjct: 205 ELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHF 264

Query: 208 KLSKLVLRKDIK-NHGNPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNFRGRRVVTF 384
           KLS + L  DIK +H   T H+PE++LNNFTTRLG  VGRM+ +LF  DP FRGRR VTF
Sbjct: 265 KLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTF 324

Query: 385 HNQRDYIFFRHHRYIF 432
           HNQRDYIFFRHHRY F
Sbjct: 325 HNQRDYIFFRHHRYEF 340

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>RPF1_PONPY (Q5R631) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 349

 Score =  165 bits (417), Expect = 8e-41
 Identities = 79/144 (54%), Positives = 103/144 (71%), Gaps = 1/144 (0%)
 Frame = +1

Query: 4   GRGPAFIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINL 183
           GR     ++L  VIPN+    R    LKKI+     R+FT ++V++ +R+ P+ L++ +L
Sbjct: 154 GRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHL 213

Query: 184 PEGPTAHFKLSKLVLRKDIKNHG-NPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNF 360
           P GPTAHFK+S + LRK+IK  G +PT H PE++LNNFTTRLGH +GRM  SLFP +P F
Sbjct: 214 PNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQF 273

Query: 361 RGRRVVTFHNQRDYIFFRHHRYIF 432
            GR+V TFHNQRDYIFFR HRYIF
Sbjct: 274 IGRQVATFHNQRDYIFFRFHRYIF 297

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>RPF1_HUMAN (Q9H9Y2) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 349

 Score =  165 bits (417), Expect = 8e-41
 Identities = 79/144 (54%), Positives = 103/144 (71%), Gaps = 1/144 (0%)
 Frame = +1

Query: 4   GRGPAFIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINL 183
           GR     ++L  VIPN+    R    LKKI+     R+FT ++V++ +R+ P+ L++ +L
Sbjct: 154 GRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHL 213

Query: 184 PEGPTAHFKLSKLVLRKDIKNHG-NPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNF 360
           P GPTAHFK+S + LRK+IK  G +PT H PE++LNNFTTRLGH +GRM  SLFP +P F
Sbjct: 214 PNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQF 273

Query: 361 RGRRVVTFHNQRDYIFFRHHRYIF 432
            GR+V TFHNQRDYIFFR HRYIF
Sbjct: 274 IGRQVATFHNQRDYIFFRFHRYIF 297

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>RPF1_BRARE (Q6IQU6) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 330

 Score =  164 bits (415), Expect = 1e-40
 Identities = 77/144 (53%), Positives = 104/144 (72%), Gaps = 1/144 (0%)
 Frame = +1

Query: 4   GRGPAFIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINL 183
           GR   F  +L  VIP+A    R    LKK++    +R FT +MV++ +R+ P+ +++ +L
Sbjct: 135 GRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHL 194

Query: 184 PEGPTAHFKLSKLVLRKDIKNHG-NPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNF 360
           P+GPTAHFK+S + LRK++K  G NPT H PE++LNNFTTRLGH +GR+  +LFP DP F
Sbjct: 195 PDGPTAHFKVSSVRLRKEMKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQF 254

Query: 361 RGRRVVTFHNQRDYIFFRHHRYIF 432
            GR+V TFHNQRD+IFFR HRYIF
Sbjct: 255 VGRQVATFHNQRDFIFFRFHRYIF 278

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>RPF1_MOUSE (Q7TND5) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 349

 Score =  163 bits (413), Expect = 2e-40
 Identities = 78/144 (54%), Positives = 103/144 (71%), Gaps = 1/144 (0%)
 Frame = +1

Query: 4   GRGPAFIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINL 183
           GR     ++L  VIP++    R    LKKI+     R+FT ++V++ +R+ P+ L++ +L
Sbjct: 154 GRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHL 213

Query: 184 PEGPTAHFKLSKLVLRKDIKNHG-NPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNF 360
           P GPTAHFK+S + LRK+IK  G +PT H PE++LNNFTTRLGH +GRM  SLFP +P F
Sbjct: 214 PNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQF 273

Query: 361 RGRRVVTFHNQRDYIFFRHHRYIF 432
            GR+V TFHNQRDYIFFR HRYIF
Sbjct: 274 IGRQVATFHNQRDYIFFRFHRYIF 297

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>RPF1_RAT (Q5RJS9) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 345

 Score =  163 bits (413), Expect = 2e-40
 Identities = 78/144 (54%), Positives = 103/144 (71%), Gaps = 1/144 (0%)
 Frame = +1

Query: 4   GRGPAFIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINL 183
           GR     ++L  VIP++    R    LKKI+     R+FT ++V++ +R+ P+ L++ +L
Sbjct: 154 GRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHL 213

Query: 184 PEGPTAHFKLSKLVLRKDIKNHG-NPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNF 360
           P GPTAHFK+S + LRK+IK  G +PT H PE++LNNFTTRLGH +GRM  SLFP +P F
Sbjct: 214 PNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQF 273

Query: 361 RGRRVVTFHNQRDYIFFRHHRYIF 432
            GR+V TFHNQRDYIFFR HRYIF
Sbjct: 274 IGRQVATFHNQRDYIFFRFHRYIF 297

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>RPF1_YEAST (P38805) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1)
          Length = 295

 Score =  153 bits (386), Expect = 3e-37
 Identities = 71/139 (51%), Positives = 97/139 (69%), Gaps = 1/139 (0%)
 Frame = +1

Query: 19  FIKELMQVIPNAQYVNRGT-YDLKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGP 195
           F   L++++PN  +V R   Y LK+I +    R FT +++++ ++++   L  I+LPEGP
Sbjct: 110 FANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGP 169

Query: 196 TAHFKLSKLVLRKDIKNHGNPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNFRGRRV 375
           T +FKLS  V  K I  HG PTSH PEL+LNNF TRLG  VGR+ QS+ PQ+P+  GR+V
Sbjct: 170 TFYFKLSSFVEVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQV 229

Query: 376 VTFHNQRDYIFFRHHRYIF 432
           +T HNQRDYIFFR HRY+F
Sbjct: 230 ITLHNQRDYIFFRRHRYVF 248

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>YDS4_SCHPO (O14180) Hypothetical protein C4F8.04 in chromosome I|
          Length = 306

 Score =  138 bits (348), Expect = 8e-33
 Identities = 66/139 (47%), Positives = 94/139 (67%), Gaps = 1/139 (0%)
 Frame = +1

Query: 19  FIKELMQVIPNAQYVNR-GTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGP 195
           F  EL+   PNA++  R G  ++ +I E A  R +T ++V++ +R++ +AL +++LP GP
Sbjct: 111 FASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGP 170

Query: 196 TAHFKLSKLVLRKDIKNHGNPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNFRGRRV 375
           + +F LS L   K+I NHG  T H PEL++NNF+TRLG  V R  QSLF Q P  +GR+V
Sbjct: 171 SFYFTLSNLQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQV 230

Query: 376 VTFHNQRDYIFFRHHRYIF 432
           VT H QRD++FFR HRY F
Sbjct: 231 VTIHCQRDFLFFRRHRYAF 249

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>YHPK_CAEEL (O62518) Hypothetical protein ZK795.3 in chromosome IV|
          Length = 292

 Score =  120 bits (302), Expect = 2e-27
 Identities = 55/136 (40%), Positives = 86/136 (63%)
 Frame = +1

Query: 19  FIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGPT 198
           F KE+  + PNAQ +NRG YD+K++V+ +  ++ T +++    R  PD +L+ +LP GPT
Sbjct: 95  FAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPT 154

Query: 199 AHFKLSKLVLRKDIKNHGNPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNFRGRRVV 378
           A F ++ +V+R DI N G  +   P L+ +N  ++LGHR   +++ LFP  P    +R++
Sbjct: 155 AFFSMANVVMRHDIPNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFPV-PKPDSKRII 213

Query: 379 TFHNQRDYIFFRHHRY 426
           TF N  DYI FRHH Y
Sbjct: 214 TFSNSEDYISFRHHVY 229

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>IMP4_SCHPO (O13823) U3 small nucleolar ribonucleoprotein protein imp4 (U3|
           snoRNP protein imp4)
          Length = 289

 Score =  118 bits (295), Expect = 1e-26
 Identities = 60/136 (44%), Positives = 81/136 (59%)
 Frame = +1

Query: 19  FIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGPT 198
           F KE+  +IPN+  +NRG   +  +VE A   + T ++++H +R  PD L+I +LP GPT
Sbjct: 101 FAKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPT 160

Query: 199 AHFKLSKLVLRKDIKNHGNPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNFRGRRVV 378
             F L  +VLR DI N G  +   P L+  N T++LG RV   + +LFP DP     RVV
Sbjct: 161 LSFSLHNVVLRHDIPNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVV 220

Query: 379 TFHNQRDYIFFRHHRY 426
           TF N  DYI FRHH Y
Sbjct: 221 TFANTDDYISFRHHIY 236

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>IMP4_RAT (Q5PQR5) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 291

 Score =  113 bits (282), Expect = 4e-25
 Identities = 59/136 (43%), Positives = 83/136 (61%)
 Frame = +1

Query: 19  FIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGPT 198
           F KEL  V P AQ +NRG +++  +V        T ++VVH +R  P  L++ +LP GPT
Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPT 159

Query: 199 AHFKLSKLVLRKDIKNHGNPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNFRGRRVV 378
           A+F L  +V+R DI + G  +  KP L+ + F++RLG RV  +++ LFP  P     RV+
Sbjct: 160 AYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPV-PKDDSHRVI 218

Query: 379 TFHNQRDYIFFRHHRY 426
           TF NQ DYI FRHH Y
Sbjct: 219 TFANQDDYISFRHHVY 234

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>IMP4_PONPY (Q5R947) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 291

 Score =  113 bits (282), Expect = 4e-25
 Identities = 59/136 (43%), Positives = 83/136 (61%)
 Frame = +1

Query: 19  FIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGPT 198
           F KEL  V P AQ +NRG +++  +V        T ++VVH +R  P  L++ +LP GPT
Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPT 159

Query: 199 AHFKLSKLVLRKDIKNHGNPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNFRGRRVV 378
           A+F L  +V+R DI + G  +  KP L+ + F++RLG RV  +++ LFP  P     RV+
Sbjct: 160 AYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPV-PKDDSHRVI 218

Query: 379 TFHNQRDYIFFRHHRY 426
           TF NQ DYI FRHH Y
Sbjct: 219 TFANQDDYISFRHHVY 234

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>IMP4_MOUSE (Q8VHZ7) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 291

 Score =  113 bits (282), Expect = 4e-25
 Identities = 59/136 (43%), Positives = 83/136 (61%)
 Frame = +1

Query: 19  FIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGPT 198
           F KEL  V P AQ +NRG +++  +V        T ++VVH +R  P  L++ +LP GPT
Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPT 159

Query: 199 AHFKLSKLVLRKDIKNHGNPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNFRGRRVV 378
           A+F L  +V+R DI + G  +  KP L+ + F++RLG RV  +++ LFP  P     RV+
Sbjct: 160 AYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPV-PKDDSHRVI 218

Query: 379 TFHNQRDYIFFRHHRY 426
           TF NQ DYI FRHH Y
Sbjct: 219 TFANQDDYISFRHHVY 234

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>IMP4_HUMAN (Q96G21) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4) (Brix domain-containing protein 4)
          Length = 291

 Score =  113 bits (282), Expect = 4e-25
 Identities = 59/136 (43%), Positives = 83/136 (61%)
 Frame = +1

Query: 19  FIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGPT 198
           F KEL  V P AQ +NRG +++  +V        T ++VVH +R  P  L++ +LP GPT
Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPT 159

Query: 199 AHFKLSKLVLRKDIKNHGNPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNFRGRRVV 378
           A+F L  +V+R DI + G  +  KP L+ + F++RLG RV  +++ LFP  P     RV+
Sbjct: 160 AYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPV-PKDDSHRVI 218

Query: 379 TFHNQRDYIFFRHHRY 426
           TF NQ DYI FRHH Y
Sbjct: 219 TFANQDDYISFRHHVY 234

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>IMP4_CANGA (Q6FNN7) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 288

 Score =  112 bits (281), Expect = 5e-25
 Identities = 56/137 (40%), Positives = 81/137 (59%)
 Frame = +1

Query: 19  FIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGPT 198
           F KE+  + PNA  +NRG Y +  +V        T ++V+H +R  P +L + + P GPT
Sbjct: 101 FAKEIKLLFPNAVRLNRGNYVMADLVSACKKSGTTDLIVLHEHRGVPTSLTVSHFPYGPT 160

Query: 199 AHFKLSKLVLRKDIKNHGNPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNFRGRRVV 378
           A F L  +VLR DI N GN +   P L+ +NFTT LG+RV  ++++LFP  P     RV+
Sbjct: 161 AFFSLHNVVLRHDILNRGNQSEVNPHLIFDNFTTPLGNRVVTILKNLFPPGPKKDSSRVI 220

Query: 379 TFHNQRDYIFFRHHRYI 429
           TF N+ D+I  R H Y+
Sbjct: 221 TFANRGDFISVRQHVYV 237

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>IMP4_ASHGO (Q755T8) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 283

 Score =  108 bits (271), Expect = 7e-24
 Identities = 55/137 (40%), Positives = 80/137 (58%)
 Frame = +1

Query: 19  FIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGPT 198
           F KE+  + P +  +NRG Y +K +V+       T ++V+H +R  P AL I + P GPT
Sbjct: 96  FAKEVKLLFPTSVRLNRGNYIMKNLVDACQKSGTTDLVVLHEHRGVPTALTISHFPHGPT 155

Query: 199 AHFKLSKLVLRKDIKNHGNPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNFRGRRVV 378
           A F L  +VLR DI N GN +   P L+ +NFTT LG RV ++++ +FP        RV+
Sbjct: 156 ASFSLHNVVLRHDILNAGNQSEVHPHLIFDNFTTPLGQRVVKILKHMFPPGVKRDSPRVI 215

Query: 379 TFHNQRDYIFFRHHRYI 429
           TF N+ D+I  R H Y+
Sbjct: 216 TFANRGDFISVRQHVYV 232

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>IMP4_YEAST (P53941) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 290

 Score =  108 bits (270), Expect = 9e-24
 Identities = 55/137 (40%), Positives = 79/137 (57%)
 Frame = +1

Query: 19  FIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGPT 198
           F KE+  + PNA  +NRG Y +  +V+       T ++V+H +R  P +L I + P GPT
Sbjct: 103 FAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPT 162

Query: 199 AHFKLSKLVLRKDIKNHGNPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNFRGRRVV 378
           A F L  +V+R DI N GN +   P L+ +NFTT LG RV  +++ LF   P     RV+
Sbjct: 163 AQFSLHNVVMRHDIINAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVI 222

Query: 379 TFHNQRDYIFFRHHRYI 429
           TF N+ D+I  R H Y+
Sbjct: 223 TFANRGDFISVRQHVYV 239

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>IMP4_YARLI (Q6C804) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 283

 Score = 98.6 bits (244), Expect = 9e-21
 Identities = 50/137 (36%), Positives = 78/137 (56%)
 Frame = +1

Query: 19  FIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGPT 198
           F KE+  + P +  +NRG   L  +V        + ++V+H +R  P A+ + + P GPT
Sbjct: 96  FAKEVKLLFPTSIRLNRGGTVLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPT 155

Query: 199 AHFKLSKLVLRKDIKNHGNPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNFRGRRVV 378
           A+F L  +VLR D+ + GN +   P L+ +NFTT LG RV ++++ LFP        RV+
Sbjct: 156 AYFSLHNVVLRHDLPDTGNMSEVHPHLIFDNFTTDLGKRVVQILKHLFPPGVKKDSARVI 215

Query: 379 TFHNQRDYIFFRHHRYI 429
           TF N+ D+I  R H Y+
Sbjct: 216 TFANRGDFISVRQHVYV 232

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>IMP4_DEBHA (Q6BYD9) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 284

 Score = 98.2 bits (243), Expect = 1e-20
 Identities = 49/137 (35%), Positives = 76/137 (55%)
 Frame = +1

Query: 19  FIKELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGPT 198
           F KE+  + PN+  +NRG Y +  +V      + + ++++H +R  P +L I + P GP+
Sbjct: 96  FSKEIKLMFPNSIKLNRGNYVITDLVATCQRVQISDLIILHEHRGIPTSLTISHFPHGPS 155

Query: 199 AHFKLSKLVLRKDIKNHGNPTSHKPELVLNNFTTRLGHRVGRMIQSLFPQDPNFRGRRVV 378
             F L  + LR D+   GN +   P LV  NFT+ LG RV ++++ LFP        RV+
Sbjct: 156 IIFTLHNVKLRHDLPEIGNSSESYPHLVFENFTSELGKRVVKIMKHLFPPGVKKDSSRVI 215

Query: 379 TFHNQRDYIFFRHHRYI 429
           TF N  D+I  RHH Y+
Sbjct: 216 TFINNDDFISVRHHMYV 232

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>YDD3_SCHPO (O14206) Hypothetical protein C1B9.03c in chromosome I|
          Length = 389

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 19/103 (18%)
 Frame = +1

Query: 166 LLIINLPEGPTAHFKLSKLVLRKDI----KNHGNPTSH---KPELVLNNFTTRLGH---- 312
           L II  P GP+ HF++ + +L KD+    KN  +PT+     P LV+N+F          
Sbjct: 96  LRIIRAPRGPSLHFRIHEYMLNKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPH 155

Query: 313 --RVGRMIQSLFP----QDPNFRGRRVVTFHNQRD--YIFFRH 417
              +    Q++FP    Q  N    + V   N+RD  YI  RH
Sbjct: 156 EALLTTTFQNMFPPISVQHTNINSVKRVLLLNRRDDGYIDLRH 198

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>PPAN_DROME (Q9VDE5) Protein Peter pan|
          Length = 460

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
 Frame = +1

Query: 172 IINLPEGPTAHFKLSKLVLRKDIKN-------HGNPTSHKPELVLNNFTTRLGH--RVGR 324
           ++ LP GP+  FK+ +  L +D+ +         +   H P +++NNF+    H   +  
Sbjct: 98  VVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFSGDGKHLKLMAT 157

Query: 325 MIQSLFP 345
             Q++FP
Sbjct: 158 TFQNMFP 164

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>ENGA_RICCN (Q92GU2) GTP-binding protein engA|
          Length = 447

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 47  QMLNMLIEELMTSRKLWNMQITESSLQSWLSTQIEGNLM 163
           Q +  +++  +   K+WN +IT S L  WL+   E +L+
Sbjct: 340 QNIEQVLDACLKIYKIWNKKITTSKLNEWLNFTTEAHLL 378

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>RNA14_YEAST (P25298) mRNA 3'-end processing protein RNA14|
          Length = 677

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 13  PAFIKELMQVIPNAQYVNRGTYDLKKIVEYANNR 114
           P  + +L+ VIP  QY N    D +K+V + N++
Sbjct: 632 PTEVLDLLSVIPKRQYFNTNLLDAQKLVNFLNDQ 665

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>BRIX_SULTO (Q975H1) Probable brix-domain ribosomal biogenesis protein|
          Length = 183

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 19  FIKELMQVIPNAQYVNRGTYDLKKIVE---YANNREFTSVMVVHTN 147
           F+ EL  V PN+  +NRG   LK I+    Y N++    + V+  N
Sbjct: 30  FLNELTYVFPNSIKINRGRQSLKDIIAKSIYLNSKYLVIIDVIKGN 75

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>SSF2_YEAST (Q12153) Ribosome biogenesis protein SSF2|
          Length = 453

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
 Frame = +1

Query: 25  KELMQVIPNAQYVNRGTYDLKKIVEYANNREFTSV-MVVHTNRREPDALLIINLPEGPTA 201
           +++MQ     +   R +  LK  V        T + M   + +    +L I   P+GPT 
Sbjct: 48  RQIMQPHTAVKLKERKSNKLKDFVVMCGPLGVTHLFMFTQSEKTGNVSLKIARTPQGPTV 107

Query: 202 HFKLSKLVLRKDIKN--------HGNPTSHKPELVLNNFTT 300
            F++    L +DIK         + +   + P LVLN F+T
Sbjct: 108 TFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLLVLNGFST 148

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>POLN_SPDV (Q8JJX1) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-)
           (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.1
          Length = 2601

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 451 FSFLSPQRCTCDDGRIYSLAGYGRSQL-VGRGNLGLEGKEIVSSSQHDD 308
           F F++P + TC    + S  GY   ++ +  G +G+  KE +++S H D
Sbjct: 280 FHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVGIPAKEELATSYHRD 328

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>SSF1_YEAST (P38789) Ribosome biogenesis protein SSF1|
          Length = 453

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
 Frame = +1

Query: 163 ALLIINLPEGPTAHFKLSKLVLRKDIKN--------HGNPTSHKPELVLNNFTT 300
           +L I   P+GPT  F++    L +DIK         + +   + P LVLN F+T
Sbjct: 95  SLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLLVLNGFST 148

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>MCM6_SCHPO (P49731) DNA replication licensing factor mcm6 (Minichromosome|
           maintenance protein 6)
          Length = 892

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 71  ELMTSRKLWNMQITESSLQSWLSTQIEGN 157
           EL  +++ W + I++SS Q W   +I+ N
Sbjct: 258 ELCANKRSWRLNISQSSFQDWQKVRIQEN 286

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>NOSD_PSEST (P19843) Copper-binding periplasmic protein precursor|
          Length = 436

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
 Frame = -2

Query: 454 QFSFLSPQRCTCDDGRIYSLAGYGRSQLVGRGNLGLEGKEIVSSSQHDDQAA**NCSTPT 275
           QF+   P +  C+ G +    G G S L+   ++ +EG                 C+   
Sbjct: 55  QFTIEQPMQLRCEPGAVIQSQGQGSSLLISAPDVLVEG-----------------CTLYE 97

Query: 274 LAYDL*GSHGSLY--PSAERAWIA*NVQ*GPQVG 179
              DL     +++  P+AERA I+ N   GP  G
Sbjct: 98  WGSDLTAMDSAVFILPAAERAQISNNRMRGPGFG 131

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>ENGA_RICPR (Q9ZCP6) GTP-binding protein engA|
          Length = 447

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +2

Query: 47  QMLNMLIEELMTSRKLWNMQITESSLQSWL--STQIEG-NLMRC*SSTYLRALLHILSYP 217
           Q +  +++  +   K+WN +IT + L  WL  +T+I    L +C     ++ +  I + P
Sbjct: 340 QNIEQVLDACLKIYKIWNKKITTNKLNKWLDFTTKIHPLPLQKCGRRVRIKYMTQIKTRP 399

Query: 218 SSF 226
            +F
Sbjct: 400 PTF 402


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,003,561
Number of Sequences: 219361
Number of extensions: 1586421
Number of successful extensions: 4066
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4053
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result