| Clone Name | bags33a04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121945.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107G04, full insert sequence Length = 1301 Score = 543 bits (274), Expect = e-151 Identities = 421/470 (89%) Strand = Plus / Plus Query: 2 caggcaggggacctgcttttattaaggagttaatgcaagtgattccaaatgctcaatatg 61 |||||||||||||||| |||||| ||||||||||||||||||| || ||| | |||| Sbjct: 490 caggcaggggacctgcctttattgaggagttaatgcaagtgatacccaattcgtgttatg 549 Query: 62 ttaatagaggaacttatgacctcaagaaaattgtggaatatgcaaataacagagagttca 121 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 550 ttaaaagaggaacttatgaactcaagaaaattgtggaatatgcaaataacagagatttca 609 Query: 122 cttcagtcatggttgtccacacaaatcgaagggaacctgatgcgctgctgatcatcaacc 181 ||||| | | |||||||||||||| ||||||||||||||||| || ||||||||||| Sbjct: 610 cttcacttgttgttgtccacacaaaccgaagggaacctgatgctctactgatcatcaatt 669 Query: 182 tacctgagggccctactgcacattttaagctatccaagctcgttctgcggaaggatataa 241 |||||| || ||||||||||||||||| ||||| || || ||||||||||||| |||| Sbjct: 670 tacctgctggtcctactgcacattttaaactatctaaacttattctgcggaaggacataa 729 Query: 242 agaaccatgggaaccctacaagtcataagccagagttggtgttgaacaatttcactacgc 301 ||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 730 agaaccacggcaaccccacaagtcataagccagagttagtgttgaacaatttcactacgc 789 Query: 302 ggcttggtcatcgtgttgggaggatgatacaatctcttttccctcaagacccaaatttcc 361 | ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| Sbjct: 790 gccttggtcatcgtgttggaaggatgatacaatctcttttccctcaagaacccaatttcc 849 Query: 362 gcggccgacgagttgtgaccttccataaccagcgagactatatattcttccgtcatcaca 421 | || || |||||||||||||||||||| ||| |||||||||| || ||||||||||||| Sbjct: 850 gtggtcggcgagttgtgaccttccataatcagagagactatatttttttccgtcatcaca 909 Query: 422 ggtacatctttgaggagaaagaaaagaaaattgtttcaaaggacaagaaa 471 |||||||||||||| ||||||||| ||||||| |||||||||||||||| Sbjct: 910 ggtacatctttgagatgaaagaaaacaaaattgcttcaaaggacaagaaa 959
>dbj|AK072896.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145C13, full insert sequence Length = 3286 Score = 543 bits (274), Expect = e-151 Identities = 421/470 (89%) Strand = Plus / Plus Query: 2 caggcaggggacctgcttttattaaggagttaatgcaagtgattccaaatgctcaatatg 61 |||||||||||||||| |||||| ||||||||||||||||||| || ||| | |||| Sbjct: 477 caggcaggggacctgcctttattgaggagttaatgcaagtgatacccaattcgtgttatg 536 Query: 62 ttaatagaggaacttatgacctcaagaaaattgtggaatatgcaaataacagagagttca 121 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 537 ttaaaagaggaacttatgaactcaagaaaattgtggaatatgcaaataacagagatttca 596 Query: 122 cttcagtcatggttgtccacacaaatcgaagggaacctgatgcgctgctgatcatcaacc 181 ||||| | | |||||||||||||| ||||||||||||||||| || ||||||||||| Sbjct: 597 cttcacttgttgttgtccacacaaaccgaagggaacctgatgctctactgatcatcaatt 656 Query: 182 tacctgagggccctactgcacattttaagctatccaagctcgttctgcggaaggatataa 241 |||||| || ||||||||||||||||| ||||| || || ||||||||||||| |||| Sbjct: 657 tacctgctggtcctactgcacattttaaactatctaaacttattctgcggaaggacataa 716 Query: 242 agaaccatgggaaccctacaagtcataagccagagttggtgttgaacaatttcactacgc 301 ||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 717 agaaccacggcaaccccacaagtcataagccagagttagtgttgaacaatttcactacgc 776 Query: 302 ggcttggtcatcgtgttgggaggatgatacaatctcttttccctcaagacccaaatttcc 361 | ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| Sbjct: 777 gccttggtcatcgtgttggaaggatgatacaatctcttttccctcaagaacccaatttcc 836 Query: 362 gcggccgacgagttgtgaccttccataaccagcgagactatatattcttccgtcatcaca 421 | || || |||||||||||||||||||| ||| |||||||||| || ||||||||||||| Sbjct: 837 gtggtcggcgagttgtgaccttccataatcagagagactatatttttttccgtcatcaca 896 Query: 422 ggtacatctttgaggagaaagaaaagaaaattgtttcaaaggacaagaaa 471 |||||||||||||| ||||||||| ||||||| |||||||||||||||| Sbjct: 897 ggtacatctttgagatgaaagaaaacaaaattgcttcaaaggacaagaaa 946
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 133 bits (67), Expect = 6e-28 Identities = 94/103 (91%) Strand = Plus / Minus Query: 322 aggatgatacaatctcttttccctcaagacccaaatttccgcggccgacgagttgtgacc 381 ||||||||||||||||||||||||||||| || |||||||| || || |||||||||||| Sbjct: 2003856 aggatgatacaatctcttttccctcaagaacccaatttccgtggtcggcgagttgtgacc 2003797 Query: 382 ttccataaccagcgagactatatattcttccgtcatcacaggt 424 |||||||| ||| |||||||||| || |||||||||||||||| Sbjct: 2003796 ttccataatcagagagactatatttttttccgtcatcacaggt 2003754 Score = 117 bits (59), Expect = 4e-23 Identities = 74/79 (93%) Strand = Plus / Minus Query: 242 agaaccatgggaaccctacaagtcataagccagagttggtgttgaacaatttcactacgc 301 ||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 2004066 agaaccacggcaaccccacaagtcataagccagagttagtgttgaacaatttcactacgc 2004007 Query: 302 ggcttggtcatcgtgttgg 320 | ||||||||||||||||| Sbjct: 2004006 gccttggtcatcgtgttgg 2003988 Score = 91.7 bits (46), Expect = 2e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 91 attgtggaatatgcaaataacagagagttcacttcagtcatggttgtccacacaaatcga 150 |||||||||||||||||||||||||| ||||||||| | | |||||||||||||| ||| Sbjct: 2006126 attgtggaatatgcaaataacagagatttcacttcacttgttgttgtccacacaaaccga 2006067 Query: 151 agggaacctg 160 |||||||||| Sbjct: 2006066 agggaacctg 2006057 Score = 79.8 bits (40), Expect = 8e-12 Identities = 73/84 (86%) Strand = Plus / Minus Query: 7 aggggacctgcttttattaaggagttaatgcaagtgattccaaatgctcaatatgttaat 66 ||||||||||| |||||| ||||||||||||||||||| || ||| | |||||||| Sbjct: 2006291 aggggacctgcctttattgaggagttaatgcaagtgatacccaattcgtgttatgttaaa 2006232 Query: 67 agaggaacttatgacctcaagaaa 90 |||||||||||||| ||||||||| Sbjct: 2006231 agaggaacttatgaactcaagaaa 2006208 Score = 69.9 bits (35), Expect = 8e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 421 aggtacatctttgaggagaaagaaaagaaaattgtttcaaaggacaagaaa 471 ||||||||||||||| ||||||||| ||||||| |||||||||||||||| Sbjct: 2003468 aggtacatctttgagatgaaagaaaacaaaattgcttcaaaggacaagaaa 2003418 Score = 63.9 bits (32), Expect = 5e-07 Identities = 71/84 (84%) Strand = Plus / Minus Query: 160 gatgcgctgctgatcatcaacctacctgagggccctactgcacattttaagctatccaag 219 ||||| || ||||||||||| |||||| || ||||||||||||||||| ||||| || Sbjct: 2005978 gatgctctactgatcatcaatttacctgctggtcctactgcacattttaaactatctaaa 2005919 Query: 220 ctcgttctgcggaaggatataaag 243 || ||||||||||||| |||||| Sbjct: 2005918 cttattctgcggaaggacataaag 2005895
>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548D03 Length = 156709 Score = 133 bits (67), Expect = 6e-28 Identities = 94/103 (91%) Strand = Plus / Minus Query: 322 aggatgatacaatctcttttccctcaagacccaaatttccgcggccgacgagttgtgacc 381 ||||||||||||||||||||||||||||| || |||||||| || || |||||||||||| Sbjct: 132636 aggatgatacaatctcttttccctcaagaacccaatttccgtggtcggcgagttgtgacc 132577 Query: 382 ttccataaccagcgagactatatattcttccgtcatcacaggt 424 |||||||| ||| |||||||||| || |||||||||||||||| Sbjct: 132576 ttccataatcagagagactatatttttttccgtcatcacaggt 132534 Score = 117 bits (59), Expect = 4e-23 Identities = 74/79 (93%) Strand = Plus / Minus Query: 242 agaaccatgggaaccctacaagtcataagccagagttggtgttgaacaatttcactacgc 301 ||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 132846 agaaccacggcaaccccacaagtcataagccagagttagtgttgaacaatttcactacgc 132787 Query: 302 ggcttggtcatcgtgttgg 320 | ||||||||||||||||| Sbjct: 132786 gccttggtcatcgtgttgg 132768 Score = 91.7 bits (46), Expect = 2e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 91 attgtggaatatgcaaataacagagagttcacttcagtcatggttgtccacacaaatcga 150 |||||||||||||||||||||||||| ||||||||| | | |||||||||||||| ||| Sbjct: 134906 attgtggaatatgcaaataacagagatttcacttcacttgttgttgtccacacaaaccga 134847 Query: 151 agggaacctg 160 |||||||||| Sbjct: 134846 agggaacctg 134837 Score = 79.8 bits (40), Expect = 8e-12 Identities = 73/84 (86%) Strand = Plus / Minus Query: 7 aggggacctgcttttattaaggagttaatgcaagtgattccaaatgctcaatatgttaat 66 ||||||||||| |||||| ||||||||||||||||||| || ||| | |||||||| Sbjct: 135071 aggggacctgcctttattgaggagttaatgcaagtgatacccaattcgtgttatgttaaa 135012 Query: 67 agaggaacttatgacctcaagaaa 90 |||||||||||||| ||||||||| Sbjct: 135011 agaggaacttatgaactcaagaaa 134988 Score = 69.9 bits (35), Expect = 8e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 421 aggtacatctttgaggagaaagaaaagaaaattgtttcaaaggacaagaaa 471 ||||||||||||||| ||||||||| ||||||| |||||||||||||||| Sbjct: 132248 aggtacatctttgagatgaaagaaaacaaaattgcttcaaaggacaagaaa 132198 Score = 63.9 bits (32), Expect = 5e-07 Identities = 71/84 (84%) Strand = Plus / Minus Query: 160 gatgcgctgctgatcatcaacctacctgagggccctactgcacattttaagctatccaag 219 ||||| || ||||||||||| |||||| || ||||||||||||||||| ||||| || Sbjct: 134758 gatgctctactgatcatcaatttacctgctggtcctactgcacattttaaactatctaaa 134699 Query: 220 ctcgttctgcggaaggatataaag 243 || ||||||||||||| |||||| Sbjct: 134698 cttattctgcggaaggacataaag 134675
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0041F13 Length = 163230 Score = 133 bits (67), Expect = 6e-28 Identities = 94/103 (91%) Strand = Plus / Minus Query: 322 aggatgatacaatctcttttccctcaagacccaaatttccgcggccgacgagttgtgacc 381 ||||||||||||||||||||||||||||| || |||||||| || || |||||||||||| Sbjct: 24718 aggatgatacaatctcttttccctcaagaacccaatttccgtggtcggcgagttgtgacc 24659 Query: 382 ttccataaccagcgagactatatattcttccgtcatcacaggt 424 |||||||| ||| |||||||||| || |||||||||||||||| Sbjct: 24658 ttccataatcagagagactatatttttttccgtcatcacaggt 24616 Score = 117 bits (59), Expect = 4e-23 Identities = 74/79 (93%) Strand = Plus / Minus Query: 242 agaaccatgggaaccctacaagtcataagccagagttggtgttgaacaatttcactacgc 301 ||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 24928 agaaccacggcaaccccacaagtcataagccagagttagtgttgaacaatttcactacgc 24869 Query: 302 ggcttggtcatcgtgttgg 320 | ||||||||||||||||| Sbjct: 24868 gccttggtcatcgtgttgg 24850 Score = 91.7 bits (46), Expect = 2e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 91 attgtggaatatgcaaataacagagagttcacttcagtcatggttgtccacacaaatcga 150 |||||||||||||||||||||||||| ||||||||| | | |||||||||||||| ||| Sbjct: 26988 attgtggaatatgcaaataacagagatttcacttcacttgttgttgtccacacaaaccga 26929 Query: 151 agggaacctg 160 |||||||||| Sbjct: 26928 agggaacctg 26919 Score = 79.8 bits (40), Expect = 8e-12 Identities = 73/84 (86%) Strand = Plus / Minus Query: 7 aggggacctgcttttattaaggagttaatgcaagtgattccaaatgctcaatatgttaat 66 ||||||||||| |||||| ||||||||||||||||||| || ||| | |||||||| Sbjct: 27153 aggggacctgcctttattgaggagttaatgcaagtgatacccaattcgtgttatgttaaa 27094 Query: 67 agaggaacttatgacctcaagaaa 90 |||||||||||||| ||||||||| Sbjct: 27093 agaggaacttatgaactcaagaaa 27070 Score = 69.9 bits (35), Expect = 8e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 421 aggtacatctttgaggagaaagaaaagaaaattgtttcaaaggacaagaaa 471 ||||||||||||||| ||||||||| ||||||| |||||||||||||||| Sbjct: 24330 aggtacatctttgagatgaaagaaaacaaaattgcttcaaaggacaagaaa 24280 Score = 63.9 bits (32), Expect = 5e-07 Identities = 71/84 (84%) Strand = Plus / Minus Query: 160 gatgcgctgctgatcatcaacctacctgagggccctactgcacattttaagctatccaag 219 ||||| || ||||||||||| |||||| || ||||||||||||||||| ||||| || Sbjct: 26840 gatgctctactgatcatcaatttacctgctggtcctactgcacattttaaactatctaaa 26781 Query: 220 ctcgttctgcggaaggatataaag 243 || ||||||||||||| |||||| Sbjct: 26780 cttattctgcggaaggacataaag 26757
>gb|DQ284478.1| Solanum tuberosum clone 148F12 putative RNA processing factor 1-like mRNA, complete cds Length = 1277 Score = 109 bits (55), Expect = 9e-21 Identities = 177/215 (82%), Gaps = 2/215 (0%) Strand = Plus / Plus Query: 182 tacctgagggccctactgcacattttaagctatccaagctcgttctgcggaaggatataa 241 ||||||| || |||||||| ||||| ||||| || |||||| | || ||||||||||| | Sbjct: 625 tacctgatggacctactgctcatttcaagctctcaaagctcatgctacggaaggatatca 684 Query: 242 agaaccatgggaaccctacaagtcataagccagagttggtgttgaacaatttcactacgc 301 |||| ||||| || || || ||||| ||||| ||| |||| |||| ||| ||||| || | Sbjct: 685 agaatcatggaaagccaaccagtcacaagcctgagctggttttgaccaacttcacaacac 744 Query: 302 ggcttggtcatcgtgttgggaggatgatacaatctcttttccctcaaga-cccaaatttc 360 | | || ||||| ||||||||||||||||| || |||||||| ||||| ||| ||||| Sbjct: 745 gtttggggcatcgagttgggaggatgatacagtcacttttcccacaagatcccgaattt- 803 Query: 361 cgcggccgacgagttgtgaccttccataaccagcg 395 || || || ||||||||||||||||| |||||||| Sbjct: 804 cgtggacgtcgagttgtgaccttccacaaccagcg 838
>gb|DQ017438.1| Drosophila melanogaster strain Oregon R CG10692 gene, promoter region and partial cds Length = 1642 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 358 ttccgcggccgacgagttgtgaccttccataaccagcgagactatatattcttccgtca 416 ||||||||||| |||| ||||| ||||| || |||||||| || |||||||||||||| Sbjct: 407 ttccgcggccgccgagcggtgacgttccacaatcagcgagattacatattcttccgtca 349
>ref|NM_058131.3| Drosophila melanogaster CG6712-RA (CG6712), mRNA Length = 1342 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 358 ttccgcggccgacgagttgtgaccttccataaccagcgagactatatattcttccgtca 416 ||||||||||| |||| ||||| ||||| || |||||||| || |||||||||||||| Sbjct: 1036 ttccgcggccgccgagcggtgacgttccacaatcagcgagattacatattcttccgtca 1094
>gb|AY051683.1| Drosophila melanogaster LD23405 full length cDNA Length = 1314 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 358 ttccgcggccgacgagttgtgaccttccataaccagcgagactatatattcttccgtca 416 ||||||||||| |||| ||||| ||||| || |||||||| || |||||||||||||| Sbjct: 996 ttccgcggccgccgagcggtgacgttccacaatcagcgagattacatattcttccgtca 1054
>gb|AC011066.5|AC011066 Drosophila melanogaster, chromosome 2L, region 33B-33C, BAC clone BACR02B06, complete sequence Length = 174314 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 358 ttccgcggccgacgagttgtgaccttccataaccagcgagactatatattcttccgtca 416 ||||||||||| |||| ||||| ||||| || |||||||| || |||||||||||||| Sbjct: 86377 ttccgcggccgccgagcggtgacgttccacaatcagcgagattacatattcttccgtca 86319
>gb|AE003635.2| Drosophila melanogaster chromosome 2L, section 44 of 83 of the complete sequence Length = 308012 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 358 ttccgcggccgacgagttgtgaccttccataaccagcgagactatatattcttccgtca 416 ||||||||||| |||| ||||| ||||| || |||||||| || |||||||||||||| Sbjct: 5853 ttccgcggccgccgagcggtgacgttccacaatcagcgagattacatattcttccgtca 5795
>gb|AC148870.2| Chlamydomonas reinhardtii clone cr-13O11, complete sequence Length = 56858 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Plus Query: 358 ttccgcggccgacgagttgtgaccttccataaccagcgagact 400 |||||||| || ||||| ||||||||||| |||||||| |||| Sbjct: 53 ttccgcgggcggcgagtggtgaccttccacaaccagcgcgact 95
>gb|DQ017439.1| Drosophila melanogaster strain Russian 2b CG10692 gene, promoter region and partial cds Length = 1653 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 358 ttccgcggccgacgagttgtgaccttccataaccagcgagactatatattcttccgtca 416 ||||||||||| |||| ||||| ||||| || |||||||| || || ||||||||||| Sbjct: 407 ttccgcggccgccgagcggtgacgttccacaatcagcgagattacatcttcttccgtca 349
>emb|AL672240.13| Mouse DNA sequence from clone RP23-27I16 on chromosome 11, complete sequence Length = 224603 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Minus Query: 98 aatatgcaaataacagagagttcact 123 ||||||||||||||||||| |||||| Sbjct: 211478 aatatgcaaataacagagaattcact 211453
>gb|AC136966.2| Bos taurus clone RP42-221D7, complete sequence Length = 158113 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 gggaaccctacaagtcataagc 271 |||||||||||||||||||||| Sbjct: 156584 gggaaccctacaagtcataagc 156563
>emb|BX510308.15| Zebrafish DNA sequence from clone DKEY-108H8 in linkage group 3, complete sequence Length = 232247 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 439 aaagaaaagaaaattgtttcaa 460 |||||||||||||||||||||| Sbjct: 136729 aaagaaaagaaaattgtttcaa 136708
>ref|NM_116386.2| Arabidopsis thaliana unknown protein AT4G01560 mRNA, complete cds Length = 1309 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 133 gttgtccacacaaatcgaagggaacctgatgcgctgctgatcatc 177 ||||| || |||||||| || |||||||||||||| || |||||| Sbjct: 609 gttgttcatacaaatcgtagagaacctgatgcgcttcttatcatc 653
>emb|AL392047.11| Human DNA sequence from clone RP11-189M8 on chromosome 10, complete sequence Length = 59314 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 429 ctttgaggagaaagaaaagaa 449 ||||||||||||||||||||| Sbjct: 57506 ctttgaggagaaagaaaagaa 57486
>emb|AL138775.6| Human DNA sequence from clone RP5-933E2 on chromosome 10 Contains a novel gene, complete sequence Length = 115304 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 429 ctttgaggagaaagaaaagaa 449 ||||||||||||||||||||| Sbjct: 192 ctttgaggagaaagaaaagaa 172
>emb|AL031290.1|HS774I24 Human DNA sequence from clone RP4-774I24 on chromosome 1q24.1-24.3 Contains the 3' end of the PLAC3 gene for placenta-specific 3 (PLAC3) and the 3' end of the ASTN gene for astrotactin, complete sequence Length = 121780 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 aaagaaaagaaaattgtttca 459 ||||||||||||||||||||| Sbjct: 18071 aaagaaaagaaaattgtttca 18091
>gb|AY050341.1| Arabidopsis thaliana AT4g01560/F11O4_6 mRNA, complete cds Length = 1282 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 133 gttgtccacacaaatcgaagggaacctgatgcgctgctgatcatc 177 ||||| || |||||||| || |||||||||||||| || |||||| Sbjct: 588 gttgttcatacaaatcgtagagaacctgatgcgcttcttatcatc 632
>gb|AF361371.1|AF361371 Escherichia coli O104 antigen gene cluster, complete sequence Length = 12105 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 atacaatctcttttccctcaa 348 ||||||||||||||||||||| Sbjct: 2152 atacaatctcttttccctcaa 2132
>emb|BX826612.1|CNS0A40N Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB47ZF05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1224 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 133 gttgtccacacaaatcgaagggaacctgatgcgctgctgatcatc 177 ||||| || |||||||| || |||||||||||||| || |||||| Sbjct: 588 gttgttcatacaaatcgtagagaacctgatgcgcttcttatcatc 632
>gb|AY086463.1| Arabidopsis thaliana clone 25253 mRNA, complete sequence Length = 1227 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 133 gttgtccacacaaatcgaagggaacctgatgcgctgctgatcatc 177 ||||| || |||||||| || |||||||||||||| || |||||| Sbjct: 609 gttgttcatacaaatcgtagagaacctgatgcgcttcttatcatc 653
>gb|BT020609.1| Arabidopsis thaliana At4g01560 gene, complete cds Length = 1032 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 133 gttgtccacacaaatcgaagggaacctgatgcgctgctgatcatc 177 ||||| || |||||||| || |||||||||||||| || |||||| Sbjct: 544 gttgttcatacaaatcgtagagaacctgatgcgcttcttatcatc 588
>gb|AF479638.1| Ovine lentivirus strain P1OLV, complete genome Length = 9189 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 gaggagaaagaaaagaaaat 452 |||||||||||||||||||| Sbjct: 864 gaggagaaagaaaagaaaat 883
>gb|AC153977.4| Mus musculus 10 BAC RP24-270K22 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163035 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 440 aagaaaagaaaattgtttcaaagg 463 ||||||| |||||||||||||||| Sbjct: 16159 aagaaaaaaaaattgtttcaaagg 16136
>gb|AC113022.7| Mus musculus chromosome 5, clone RP23-187D22, complete sequence Length = 210968 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 caagtgattccaaatgctca 56 |||||||||||||||||||| Sbjct: 78341 caagtgattccaaatgctca 78322
>gb|AC159139.9| Mus musculus 10 BAC RP24-370M23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 185202 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 440 aagaaaagaaaattgtttcaaagg 463 ||||||| |||||||||||||||| Sbjct: 10760 aagaaaaaaaaattgtttcaaagg 10783
>gb|AC135671.3| Mus musculus BAC clone RP23-440D14 from chromosome 17, complete sequence Length = 188307 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 aggagaaagaaaagaaaatt 453 |||||||||||||||||||| Sbjct: 111184 aggagaaagaaaagaaaatt 111203
>emb|AL021497.1|CEY51A2D Caenorhabditis elegans YAC Y51A2D, complete sequence Length = 139259 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 gaaaagaaaattgtttcaaa 461 |||||||||||||||||||| Sbjct: 114736 gaaaagaaaattgtttcaaa 114717
>gb|AY366501.1| Homo sapiens clone BAC44d21 BCSC-1 (LOH11CR2A) gene, complete cds; alternatively spliced isoforms Length = 219836 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 ctttgaggagaaagaaaaga 448 |||||||||||||||||||| Sbjct: 67335 ctttgaggagaaagaaaaga 67354
>ref|XM_739421.1| Plasmodium chabaudi chabaudi hypothetical protein (PC001426.02.0) partial mRNA Length = 3582 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 aaagaaaagaaaattgtttc 458 |||||||||||||||||||| Sbjct: 1594 aaagaaaagaaaattgtttc 1575
>gb|AC155718.4| Mus musculus 10 BAC RP24-217J7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 155643 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 435 ggagaaagaaaagaaaattgtttc 458 |||||||||||||| ||||||||| Sbjct: 136268 ggagaaagaaaagataattgtttc 136291
>gb|AE014822.1| Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence Length = 253924 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 aggagaaagaaaagaaaatt 453 |||||||||||||||||||| Sbjct: 227434 aggagaaagaaaagaaaatt 227453
>emb|AL358777.12| Human DNA sequence from clone RP11-421M1 on chromosome 6 Contains the gene for a novel glucosaminyl (N-acetyl) transferase family protein, the 3' end of the GCNT2 gene for glucosaminyl (N-acetyl) transferase 2 I-branching enzyme, the gene for a novel protein similar to GCNT2, a novel gene, the gene for PAK/PLC-interacting protein 1, the gene for a novel protein similar to PTD011 and four CpG islands, complete sequence Length = 155359 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 agaaagaaaagaaaattgtt 456 |||||||||||||||||||| Sbjct: 130358 agaaagaaaagaaaattgtt 130377
>emb|AL162416.13| Human DNA sequence from clone RP11-296H15 on chromosome 9 Contains the 3' end of the TMC1 gene for transmembrane cochlear-expressed 1 and three CpG islands, complete sequence Length = 75609 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 aaagaaaattgtttcaaagg 463 |||||||||||||||||||| Sbjct: 33019 aaagaaaattgtttcaaagg 33000
>emb|AL139083.15| Human DNA sequence from clone RP11-270C18 on chromosome 13 Contains the 3' end of the NBEA gene for neurobeachin (BCL8B FLJ10197 KIAA1544) and a novel gene, complete sequence Length = 162081 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 aaagaaaagaaaattgtttcaaag 462 |||||||| ||||||||||||||| Sbjct: 54933 aaagaaaaaaaaattgtttcaaag 54910
>gb|AC164171.5| Mus musculus 10 BAC RP24-574G7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 147660 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 435 ggagaaagaaaagaaaattgtttc 458 |||||||||||||| ||||||||| Sbjct: 142141 ggagaaagaaaagataattgtttc 142118
>gb|AC158917.6| Mus musculus chromosome 5, clone RP24-238D24, complete sequence Length = 184805 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 gaggagaaagaaaagaaaat 452 |||||||||||||||||||| Sbjct: 51641 gaggagaaagaaaagaaaat 51622
>emb|AL731827.6| Mouse DNA sequence from clone RP23-109M24 on chromosome 11, complete sequence Length = 115109 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 cctcaagaaaattgtggaatatgc 104 |||||||| ||||||||||||||| Sbjct: 53903 cctcaagagaattgtggaatatgc 53926
>emb|BX927402.13| Zebrafish DNA sequence from clone CH211-262G12 in linkage group 10, complete sequence Length = 155963 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 427 atctttgaggagaaagaaaagaaa 450 ||||||||| |||||||||||||| Sbjct: 71138 atctttgagaagaaagaaaagaaa 71115
>gb|AF484686.1| Nuclearia moebiusi 18S small subunit ribosomal RNA, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA and internal transcribed spacer 2, complete sequence; and 28S large subunit ribosomal RNA, partial sequence Length = 3018 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 gaggagaaagaaaagaaaat 452 |||||||||||||||||||| Sbjct: 2345 gaggagaaagaaaagaaaat 2364
>gb|AC093689.4| Homo sapiens BAC clone RP11-725M22 from 4, complete sequence Length = 167590 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 aaagaaaagaaaattgtttc 458 |||||||||||||||||||| Sbjct: 141767 aaagaaaagaaaattgtttc 141748
>gb|AC096751.3| Homo sapiens BAC clone RP11-440I14 from 4, complete sequence Length = 174642 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 gcttttattaaggagttaat 35 |||||||||||||||||||| Sbjct: 171576 gcttttattaaggagttaat 171557
>gb|AC069302.4| Homo sapiens BAC clone RP11-322J23 from 4, complete sequence Length = 178780 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 aggagaaagaaaagaaaatt 453 |||||||||||||||||||| Sbjct: 122006 aggagaaagaaaagaaaatt 121987
>gb|AC140489.2| Mus musculus BAC clone RP24-144C10 from chromosome 1, complete sequence Length = 194368 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tgaggagaaagaaaagaaaa 451 |||||||||||||||||||| Sbjct: 162524 tgaggagaaagaaaagaaaa 162505
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 431 ttgaggagaaagaaaagaaaattg 454 ||||||||||||| |||||||||| Sbjct: 24744224 ttgaggagaaagacaagaaaattg 24744201
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ttaatagaggaacttatgac 81 |||||||||||||||||||| Sbjct: 4397522 ttaatagaggaacttatgac 4397541
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 gagaaagaaaagaaaattgt 455 |||||||||||||||||||| Sbjct: 251251 gagaaagaaaagaaaattgt 251232
>dbj|AP001724.1| Homo sapiens genomic DNA, chromosome 21q, section 68/105 Length = 340000 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 agaaagaaaagaaaattgtt 456 |||||||||||||||||||| Sbjct: 244292 agaaagaaaagaaaattgtt 244311
>gb|AC108130.3| Homo sapiens chromosome 5 clone RP11-84B12, complete sequence Length = 159922 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 aagaaaattgtggaatatgcaaat 108 ||||||| |||||||||||||||| Sbjct: 47685 aagaaaaatgtggaatatgcaaat 47708
>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544B02 Length = 156339 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ttaatagaggaacttatgac 81 |||||||||||||||||||| Sbjct: 81086 ttaatagaggaacttatgac 81105
>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0005A05 Length = 190834 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 gagaaagaaaagaaaattgt 455 |||||||||||||||||||| Sbjct: 3089 gagaaagaaaagaaaattgt 3070
>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0436E04 Length = 144644 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 gagaaagaaaagaaaattgt 455 |||||||||||||||||||| Sbjct: 92921 gagaaagaaaagaaaattgt 92902
>emb|BX005479.5| Zebrafish DNA sequence from clone DKEY-209E8 in linkage group 3, complete sequence Length = 171793 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 aaaagaaaattgtttcaaag 462 |||||||||||||||||||| Sbjct: 68304 aaaagaaaattgtttcaaag 68323
>emb|CT025611.16| Mouse DNA sequence from clone RP24-100P15 on chromosome 12, complete sequence Length = 240699 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 aggagaaagaaaagaaaatt 453 |||||||||||||||||||| Sbjct: 18207 aggagaaagaaaagaaaatt 18226
>gb|AC156636.2| Mus musculus BAC clone RP24-401F19 from chromosome 12, complete sequence Length = 170370 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 tgaggagaaagaaaagaaaa 451 |||||||||||||||||||| Sbjct: 124873 tgaggagaaagaaaagaaaa 124892
>dbj|AP000818.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-44A17, complete sequence Length = 134973 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ctttgaggagaaagaaaaga 448 |||||||||||||||||||| Sbjct: 59922 ctttgaggagaaagaaaaga 59903
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 431 ttgaggagaaagaaaagaaaattg 454 ||||||||||||| |||||||||| Sbjct: 24672430 ttgaggagaaagacaagaaaattg 24672407
>emb|AL672123.16| Mouse DNA sequence from clone RP23-436I3 on chromosome X, complete sequence Length = 219385 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 ggagaaagaaaagaaaattg 454 |||||||||||||||||||| Sbjct: 215518 ggagaaagaaaagaaaattg 215537
>emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 140383 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 431 ttgaggagaaagaaaagaaaattg 454 ||||||||||||| |||||||||| Sbjct: 51381 ttgaggagaaagacaagaaaattg 51358
>emb|AL391261.3|CNS06C85 Human chromosome 14 DNA sequence BAC C-2014B16 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162144 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 gcaggcaggggacctgcttttatt 24 ||||||||||||| |||||||||| Sbjct: 108735 gcaggcaggggacttgcttttatt 108712
>dbj|AP000688.1| Homo sapiens genomic DNA, chromosome 21q22.2, PAC clone:P27A22, CBR1-HLCS region Length = 171703 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 agaaagaaaagaaaattgtt 456 |||||||||||||||||||| Sbjct: 59478 agaaagaaaagaaaattgtt 59497 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,925,487 Number of Sequences: 3902068 Number of extensions: 5925487 Number of successful extensions: 175928 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 175522 Number of HSP's gapped (non-prelim): 400 length of query: 527 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 504 effective length of database: 17,143,297,704 effective search space: 8640222042816 effective search space used: 8640222042816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)