ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags32j21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464744.1| Oryza sativa (japonica cultivar-group), mRNA 597 e-167
2dbj|AK121976.1| Oryza sativa (japonica cultivar-group) cDNA clon... 589 e-165
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
4dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
5dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 44 0.53
6gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 42 2.1
7ref|NM_116685.3| Arabidopsis thaliana PMP22 AT4G04470 (PMP22) mR... 42 2.1
8gb|BC066829.1| Mus musculus RIKEN cDNA 2610208M17 gene, mRNA (cD... 42 2.1
9gb|AE014075.1| Escherichia coli CFT073, complete genome 42 2.1
10gb|CP000243.1| Escherichia coli UTI89, complete genome 42 2.1
11gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 42 2.1
12emb|AL161500.2|ATCHRIV12 Arabidopsis thaliana DNA chromosome 4, ... 42 2.1
13dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 42 2.1
14gb|AF335538.1| Bacteriophage HK620, complete genome 42 2.1
15emb|BX829369.1|CNS0A4HG Arabidopsis thaliana Full-length cDNA Co... 42 2.1
16emb|BX828649.1|CNS0A4I6 Arabidopsis thaliana Full-length cDNA Co... 42 2.1
17emb|BX828804.1|CNS0A4C9 Arabidopsis thaliana Full-length cDNA Co... 42 2.1
18gb|BT003055.1| Arabidopsis thaliana At4g04470 gene, complete cds 42 2.1
19gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 42 2.1
20emb|AJ006053.1|ATH6053 Arabidopsis thaliana mRNA for peroxisomal... 42 2.1
21gb|AF076243.1|AF076243 Arabidopsis thaliana BAC T26N6 from chrom... 42 2.1
22gb|CP000036.1| Shigella boydii Sb227, complete genome 42 2.1
23gb|CP000038.1| Shigella sonnei Ss046, complete genome 42 2.1
24ref|NM_120251.3| Arabidopsis thaliana wave3 AT5G01730 (wave3) mR... 40 8.2
25gb|AC153076.3| Aotus nancymaae clone CH258-449A9, complete sequence 40 8.2
26gb|AY743927.1| Arabidopsis thaliana SCAR4 (SCAR4) mRNA, complete... 40 8.2
27gb|AF060096.1| Lama glama microsatellite LCA8 repeat region 40 8.2
28gb|AC102654.7| Mus musculus chromosome 1, clone RP23-2K13, compl... 40 8.2
29ref|XM_580955.2| PREDICTED: Bos taurus similar to Protein AATF (... 40 8.2
30ref|XM_456065.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F22066g ... 40 8.2
31gb|AC164600.5| Mus musculus chromosome 1, clone RP23-366M5, comp... 40 8.2
32ref|XM_862407.1| PREDICTED: Canis familiaris similar to Protein ... 40 8.2
33ref|XM_537715.2| PREDICTED: Canis familiaris similar to Protein ... 40 8.2
34gb|AC124041.3| Oryctolagus cuniculus clone LB1-44O5, complete se... 40 8.2
35gb|AC022773.17| Mus musculus chromosome X, clone RP23-157B8, com... 40 8.2
36emb|AL162493.21| Human DNA sequence from clone RP11-120L14 on ch... 40 8.2
37emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 8.2
38emb|AL162351.1|ATT20L15 Arabidopsis thaliana DNA chromosome 5, B... 40 8.2
39emb|AL161946.1|ATF7A7 Arabidopsis thaliana DNA chromosome 5, BAC... 40 8.2
40emb|BX005078.32| Zebrafish DNA sequence from clone CH211-182N24 ... 40 8.2
41emb|BX901939.10| Zebrafish DNA sequence from clone CH211-263C17 ... 40 8.2
42emb|BX323858.12| Zebrafish DNA sequence from clone DKEY-102F10 i... 40 8.2
43gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 40 8.2
44dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 8.2
45emb|BX677671.6| Mouse DNA sequence from clone RP23-468K6 on chro... 40 8.2
46emb|AJ325315.1|HSA325315 Homo sapiens genomic sequence surroundi... 40 8.2
47emb|CR847940.9| Zebrafish DNA sequence from clone CH211-250O24 i... 40 8.2
48dbj|AP000793.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.2
49emb|CR376825.16| Zebrafish DNA sequence from clone CH211-136O20 ... 40 8.2
50emb|AL731832.13| Mouse DNA sequence from clone RP23-180N10 on ch... 40 8.2
51gb|AC151372.3| Aotus nancymaae clone CH258-368D16, complete sequ... 40 8.2
52emb|AL833774.4| Mouse DNA sequence from clone RP23-383I16 on chr... 40 8.2 
>ref|XM_464744.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1148

 Score =  597 bits (301), Expect = e-167
 Identities = 487/549 (88%)
 Strand = Plus / Plus

                                                                       
Query: 23  tggctcgcagggcctggaggcagtacctgctccagctgcagcgccacccactccgcacca 82
           |||||||  |||| ||| |||||||||||| |||||| |||| |||||| ||||| ||||
Sbjct: 330 tggctcggcgggcgtggcggcagtacctgcgccagctccagctccaccctctccggacca 389

                                                                       
Query: 83  agatgatcactgctgggttcctcgcaggcatcagtgactccgtggcgcagaagctctctg 142
           |||||||||| || |||| |||||| ||| |||| ||||||||||||||||||||||| |
Sbjct: 390 agatgatcacggcggggtgcctcgccggcgtcagcgactccgtggcgcagaagctctccg 449

                                                                       
Query: 143 gatatcagaagattgagaagcgccgcctcctgctcaagatgatatttgggtttgcatatg 202
           | || |||| ||| ||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct: 450 gctaccagaggatcgagaagcgccgcctcctgctcaagatgctctttgggtttgcttatg 509

                                                                       
Query: 203 gtggcccatttgggcatttcctgcataaaatgttggattatatctttaaagggaagaagg 262
           ||||||| ||||| |||||||| |||||| |||| ||||||||||| |||||||||||||
Sbjct: 510 gtggcccttttggccatttcctccataaagtgttagattatatcttcaaagggaagaagg 569

                                                                       
Query: 263 ataccaaaactgtagctaagaaggtgttgctggagcagatcacttcctcaccctggaaca 322
           ||||||||||| |||| ||||||||||| ||||||||||||||||| || |||||||| |
Sbjct: 570 ataccaaaactatagccaagaaggtgttactggagcagatcacttcttctccctggaata 629

                                                                       
Query: 323 atttactcttcttattctattatggatatgttgttgagaagaggcctttcaaggaggtga 382
           || | |||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 630 atctgctcttcttgttctattatggatatgttgttgagaggaggccttttaaggaggtga 689

                                                                       
Query: 383 aaattagggtgaagaaacagtatctgtcagtgcaattgtctgcttggatgttttggccag 442
           | |  ||||| |||||||| ||||  || |||||||||||||||||||||||||||||| 
Sbjct: 690 agaccagggttaagaaacaatatccctcggtgcaattgtctgcttggatgttttggccaa 749

                                                                       
Query: 443 tagttggttggataaaccatcagtacgtgcctttgcagtttcgggtgattgtccacagct 502
           |||||||||||||||| |||  |||| |||| |||||||| ||||||||| |||||||||
Sbjct: 750 tagttggttggataaatcatatgtacatgccgttgcagttccgggtgattttccacagct 809

                                                                       
Query: 503 ttgttgcatgttgctgggggatatttctcaaccttcgcgccagagcgatgtctttgaagc 562
           |||||||||||||||||||||||||||| |||||||| || || || |||||||||||||
Sbjct: 810 ttgttgcatgttgctgggggatatttcttaaccttcgtgcaagggccatgtctttgaagc 869

                    
Query: 563 agtcataga 571
           |||| ||||
Sbjct: 870 agtcgtaga 878
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>dbj|AK121976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108J17, full
           insert sequence
          Length = 1146

 Score =  589 bits (297), Expect = e-165
 Identities = 486/549 (88%)
 Strand = Plus / Plus

                                                                       
Query: 23  tggctcgcagggcctggaggcagtacctgctccagctgcagcgccacccactccgcacca 82
           |||||||  |||| ||| |||||||||||| |||||| |||| |||||| ||||| ||||
Sbjct: 328 tggctcggcgggcgtggcggcagtacctgcgccagctccagctccaccctctccggacca 387

                                                                       
Query: 83  agatgatcactgctgggttcctcgcaggcatcagtgactccgtggcgcagaagctctctg 142
           |||||||||| || |||| |||||| ||| |||| ||||||||||||||||||||||| |
Sbjct: 388 agatgatcacggcggggtgcctcgccggcgtcagcgactccgtggcgcagaagctctccg 447

                                                                       
Query: 143 gatatcagaagattgagaagcgccgcctcctgctcaagatgatatttgggtttgcatatg 202
           | || |||| ||| ||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct: 448 gctaccagaggatcgagaagcgccgcctcctgctcaagatgctctttgggtttgcttatg 507

                                                                       
Query: 203 gtggcccatttgggcatttcctgcataaaatgttggattatatctttaaagggaagaagg 262
           ||||||| ||||| |||||||| |||||| |||| ||||||||||| |||||||||||||
Sbjct: 508 gtggcccttttggccatttcctccataaagtgttagattatatcttcaaagggaagaagg 567

                                                                       
Query: 263 ataccaaaactgtagctaagaaggtgttgctggagcagatcacttcctcaccctggaaca 322
           ||||||||||| |||| ||||||||||| ||||||||||||||||| || |||||||| |
Sbjct: 568 ataccaaaactatagccaagaaggtgttactggagcagatcacttcttctccctggaata 627

                                                                       
Query: 323 atttactcttcttattctattatggatatgttgttgagaagaggcctttcaaggaggtga 382
           || | |||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 628 atctgctcttcttgttctattatggatatgttgttgagaggaggccttttaaggaggtga 687

                                                                       
Query: 383 aaattagggtgaagaaacagtatctgtcagtgcaattgtctgcttggatgttttggccag 442
           | |  ||||| |||||||| ||||  || ||||| |||||||||||||||||||||||| 
Sbjct: 688 agaccagggttaagaaacaatatccctcggtgcagttgtctgcttggatgttttggccaa 747

                                                                       
Query: 443 tagttggttggataaaccatcagtacgtgcctttgcagtttcgggtgattgtccacagct 502
           |||||||||||||||| |||  |||| |||| |||||||| ||||||||| |||||||||
Sbjct: 748 tagttggttggataaatcatatgtacatgccgttgcagttccgggtgattttccacagct 807

                                                                       
Query: 503 ttgttgcatgttgctgggggatatttctcaaccttcgcgccagagcgatgtctttgaagc 562
           |||||||||||||||||||||||||||| |||||||| || || || |||||||||||||
Sbjct: 808 ttgttgcatgttgctgggggatatttcttaaccttcgtgcaagggccatgtctttgaagc 867

                    
Query: 563 agtcataga 571
           |||| ||||
Sbjct: 868 agtcgtaga 876
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  129 bits (65), Expect = 1e-26
 Identities = 92/101 (91%)
 Strand = Plus / Minus

                                                                           
Query: 187     tttgggtttgcatatggtggcccatttgggcatttcctgcataaaatgttggattatatc 246
               ||||||||||| ||||||||||| ||||| |||||||| |||||| |||| |||||||||
Sbjct: 7067075 tttgggtttgcttatggtggcccttttggccatttcctccataaagtgttagattatatc 7067016

                                                        
Query: 247     tttaaagggaagaaggataccaaaactgtagctaagaaggt 287
               || |||||||||||||||||||||||| |||| ||||||||
Sbjct: 7067015 ttcaaagggaagaaggataccaaaactatagccaagaaggt 7066975



 Score =  113 bits (57), Expect = 7e-22
 Identities = 90/101 (89%)
 Strand = Plus / Minus

                                                                           
Query: 83      agatgatcactgctgggttcctcgcaggcatcagtgactccgtggcgcagaagctctctg 142
               |||||||||| || |||| |||||| ||| |||| ||||||||||||||||||||||| |
Sbjct: 7068125 agatgatcacggcggggtgcctcgccggcgtcagcgactccgtggcgcagaagctctccg 7068066

                                                        
Query: 143     gatatcagaagattgagaagcgccgcctcctgctcaagatg 183
               | || |||| ||| |||||||||||||||||||||||||||
Sbjct: 7068065 gctaccagaggatcgagaagcgccgcctcctgctcaagatg 7068025



 Score =  111 bits (56), Expect = 3e-21
 Identities = 80/88 (90%)
 Strand = Plus / Minus

                                                                           
Query: 432     gttttggccagtagttggttggataaaccatcagtacgtgcctttgcagtttcgggtgat 491
               |||||||||| |||||||||||||||| |||  |||| |||| |||||||| ||||||||
Sbjct: 7065993 gttttggccaatagttggttggataaatcatatgtacatgccgttgcagttccgggtgat 7065934

                                           
Query: 492     tgtccacagctttgttgcatgttgctgg 519
               | ||||||||||||||||||||||||||
Sbjct: 7065933 tttccacagctttgttgcatgttgctgg 7065906



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 71/78 (91%)
 Strand = Plus / Minus

                                                                           
Query: 284     aggtgttgctggagcagatcacttcctcaccctggaacaatttactcttcttattctatt 343
               ||||||| ||||||||||||||||| || |||||||| ||| | |||||||| |||||||
Sbjct: 7066640 aggtgttactggagcagatcacttcttctccctggaataatctgctcttcttgttctatt 7066581

                                 
Query: 344     atggatatgttgttgaga 361
               ||||||||||||||||||
Sbjct: 7066580 atggatatgttgttgaga 7066563



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                           
Query: 363     gaggcctttcaaggaggtgaaaattagggtgaagaaacagtatctgtcagtgcaattgtc 422
               ||||||||| ||||||||||| |  ||||| |||||||| ||||  || |||||||||||
Sbjct: 7066149 gaggccttttaaggaggtgaagaccagggttaagaaacaatatccctcggtgcaattgtc 7066090

                         
Query: 423     tgcttggatg 432
               ||||||||||
Sbjct: 7066089 tgcttggatg 7066080



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                     
Query: 518     gggggatatttctcaaccttcgcgccagagcgatgtctttgaagcagtcataga 571
               ||||||||||||| |||||||| || || || ||||||||||||||||| ||||
Sbjct: 7065814 gggggatatttcttaaccttcgtgcaagggccatgtctttgaagcagtcgtaga 7065761



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                           
Query: 23      tggctcgcagggcctggaggcagtacctgctccagctgcagcgccacccactccgcacca 82
               |||||||  |||| ||| |||||||||||| |||||| |||| |||||| ||||| ||||
Sbjct: 7068269 tggctcggcgggcgtggcggcagtacctgcgccagctccagctccaccctctccggacca 7068210

                 
Query: 83      ag 84
               ||
Sbjct: 7068209 ag 7068208
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>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0495C02
          Length = 151467

 Score =  129 bits (65), Expect = 1e-26
 Identities = 92/101 (91%)
 Strand = Plus / Minus

                                                                         
Query: 187   tttgggtttgcatatggtggcccatttgggcatttcctgcataaaatgttggattatatc 246
             ||||||||||| ||||||||||| ||||| |||||||| |||||| |||| |||||||||
Sbjct: 70494 tttgggtttgcttatggtggcccttttggccatttcctccataaagtgttagattatatc 70435

                                                      
Query: 247   tttaaagggaagaaggataccaaaactgtagctaagaaggt 287
             || |||||||||||||||||||||||| |||| ||||||||
Sbjct: 70434 ttcaaagggaagaaggataccaaaactatagccaagaaggt 70394



 Score =  113 bits (57), Expect = 7e-22
 Identities = 90/101 (89%)
 Strand = Plus / Minus

                                                                         
Query: 83    agatgatcactgctgggttcctcgcaggcatcagtgactccgtggcgcagaagctctctg 142
             |||||||||| || |||| |||||| ||| |||| ||||||||||||||||||||||| |
Sbjct: 71544 agatgatcacggcggggtgcctcgccggcgtcagcgactccgtggcgcagaagctctccg 71485

                                                      
Query: 143   gatatcagaagattgagaagcgccgcctcctgctcaagatg 183
             | || |||| ||| |||||||||||||||||||||||||||
Sbjct: 71484 gctaccagaggatcgagaagcgccgcctcctgctcaagatg 71444



 Score =  111 bits (56), Expect = 3e-21
 Identities = 80/88 (90%)
 Strand = Plus / Minus

                                                                         
Query: 432   gttttggccagtagttggttggataaaccatcagtacgtgcctttgcagtttcgggtgat 491
             |||||||||| |||||||||||||||| |||  |||| |||| |||||||| ||||||||
Sbjct: 69412 gttttggccaatagttggttggataaatcatatgtacatgccgttgcagttccgggtgat 69353

                                         
Query: 492   tgtccacagctttgttgcatgttgctgg 519
             | ||||||||||||||||||||||||||
Sbjct: 69352 tttccacagctttgttgcatgttgctgg 69325



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 71/78 (91%)
 Strand = Plus / Minus

                                                                         
Query: 284   aggtgttgctggagcagatcacttcctcaccctggaacaatttactcttcttattctatt 343
             ||||||| ||||||||||||||||| || |||||||| ||| | |||||||| |||||||
Sbjct: 70059 aggtgttactggagcagatcacttcttctccctggaataatctgctcttcttgttctatt 70000

                               
Query: 344   atggatatgttgttgaga 361
             ||||||||||||||||||
Sbjct: 69999 atggatatgttgttgaga 69982



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                         
Query: 363   gaggcctttcaaggaggtgaaaattagggtgaagaaacagtatctgtcagtgcaattgtc 422
             ||||||||| ||||||||||| |  ||||| |||||||| ||||  || |||||||||||
Sbjct: 69568 gaggccttttaaggaggtgaagaccagggttaagaaacaatatccctcggtgcaattgtc 69509

                       
Query: 423   tgcttggatg 432
             ||||||||||
Sbjct: 69508 tgcttggatg 69499



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                   
Query: 518   gggggatatttctcaaccttcgcgccagagcgatgtctttgaagcagtcataga 571
             ||||||||||||| |||||||| || || || ||||||||||||||||| ||||
Sbjct: 69233 gggggatatttcttaaccttcgtgcaagggccatgtctttgaagcagtcgtaga 69180



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                         
Query: 23    tggctcgcagggcctggaggcagtacctgctccagctgcagcgccacccactccgcacca 82
             |||||||  |||| ||| |||||||||||| |||||| |||| |||||| ||||| ||||
Sbjct: 71688 tggctcggcgggcgtggcggcagtacctgcgccagctccagctccaccctctccggacca 71629

               
Query: 83    ag 84
             ||
Sbjct: 71628 ag 71627
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 46     tacctgctccagctgcagcgcc 67
              ||||||||||||||||||||||
Sbjct: 754750 tacctgctccagctgcagcgcc 754771
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 42    gcagtacctgctccagctgcagcgc 66
             |||||||||||||||| ||||||||
Sbjct: 59623 gcagtacctgctccagttgcagcgc 59647
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>ref|NM_116685.3| Arabidopsis thaliana PMP22 AT4G04470 (PMP22) mRNA, complete cds
          Length = 907

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 247 tttaaagggaagaaggataccaaaactgtagctaagaaggt 287
           ||||||||||||||||||||  | ||||| || ||||||||
Sbjct: 273 tttaaagggaagaaggatacacagactgttgcaaagaaggt 313
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>gb|BC066829.1| Mus musculus RIKEN cDNA 2610208M17 gene, mRNA (cDNA clone
           IMAGE:30464827), partial cds
          Length = 1794

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 280 aagaaggtgttgctggagcag 300
           |||||||||||||||||||||
Sbjct: 402 aagaaggtgttgctggagcag 422
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 42    gcagtacctgctccagctgcagcgc 66
             |||||||||||||||| ||||||||
Sbjct: 63497 gcagtacctgctccagttgcagcgc 63521
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 42    gcagtacctgctccagctgcagcgc 66
             |||||||||||||||| ||||||||
Sbjct: 63535 gcagtacctgctccagttgcagcgc 63559
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 42    gcagtacctgctccagctgcagcgc 66
             |||||||||||||||| ||||||||
Sbjct: 61695 gcagtacctgctccagttgcagcgc 61719
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>emb|AL161500.2|ATCHRIV12 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 12
          Length = 199759

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 247    tttaaagggaagaaggataccaaaactgtagctaagaaggt 287
              ||||||||||||||||||||  | ||||| || ||||||||
Sbjct: 150435 tttaaagggaagaaggatacacagactgttgcaaagaaggt 150395
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 42    gcagtacctgctccagctgcagcgc 66
             |||||||||||||||| ||||||||
Sbjct: 61695 gcagtacctgctccagttgcagcgc 61719
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>gb|AF335538.1| Bacteriophage HK620, complete genome
          Length = 38297

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 50    tgctccagctgcagcgccacccact 74
             ||||||| |||||||||||||||||
Sbjct: 33051 tgctccacctgcagcgccacccact 33027
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>emb|BX829369.1|CNS0A4HG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL9ZA06 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 808

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 247 tttaaagggaagaaggataccaaaactgtagctaagaaggt 287
           ||||||||||||||||||||  | ||||| || ||||||||
Sbjct: 253 tttaaagggaagaaggatacacagactgttgcaaagaaggt 293
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>emb|BX828649.1|CNS0A4I6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL25ZF10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 781

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 247 tttaaagggaagaaggataccaaaactgtagctaagaaggt 287
           ||||||||||||||||||||  | ||||| || ||||||||
Sbjct: 259 tttaaagggaagaaggatacacagactgttgcaaagaaggt 299
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>emb|BX828804.1|CNS0A4C9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL40ZA04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 772

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 247 tttaaagggaagaaggataccaaaactgtagctaagaaggt 287
           ||||||||||||||||||||  | ||||| || ||||||||
Sbjct: 234 tttaaagggaagaaggatacacagactgttgcaaagaaggt 274
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>gb|BT003055.1| Arabidopsis thaliana At4g04470 gene, complete cds
          Length = 573

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 247 tttaaagggaagaaggataccaaaactgtagctaagaaggt 287
           ||||||||||||||||||||  | ||||| || ||||||||
Sbjct: 241 tttaaagggaagaaggatacacagactgttgcaaagaaggt 281
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 42    gcagtacctgctccagctgcagcgc 66
             |||||||||||||||| ||||||||
Sbjct: 59108 gcagtacctgctccagttgcagcgc 59132
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>emb|AJ006053.1|ATH6053 Arabidopsis thaliana mRNA for peroxisomal membrane protein
          Length = 580

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 247 tttaaagggaagaaggataccaaaactgtagctaagaaggt 287
           ||||||||||||||||||||  | ||||| || ||||||||
Sbjct: 244 tttaaagggaagaaggatacacagactgttgcaaagaaggt 284
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>gb|AF076243.1|AF076243 Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete
             sequence
          Length = 99384

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 247   tttaaagggaagaaggataccaaaactgtagctaagaaggt 287
             ||||||||||||||||||||  | ||||| || ||||||||
Sbjct: 50089 tttaaagggaagaaggatacacagactgttgcaaagaaggt 50049
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 42    gcagtacctgctccagctgcagcgc 66
             |||||||||||||||| ||||||||
Sbjct: 49366 gcagtacctgctccagttgcagcgc 49390
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 42    gcagtacctgctccagctgcagcgc 66
             |||||||||||||||| ||||||||
Sbjct: 69640 gcagtacctgctccagttgcagcgc 69664
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>ref|NM_120251.3| Arabidopsis thaliana wave3 AT5G01730 (wave3) mRNA, complete cds
          Length = 3700

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 131  agaagctctctggatatcag 150
            ||||||||||||||||||||
Sbjct: 1290 agaagctctctggatatcag 1271
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>gb|AC153076.3| Aotus nancymaae clone CH258-449A9, complete sequence
          Length = 184072

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 502  tttgttgcatgttgctgggg 521
            ||||||||||||||||||||
Sbjct: 6210 tttgttgcatgttgctgggg 6191
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>gb|AY743927.1| Arabidopsis thaliana SCAR4 (SCAR4) mRNA, complete cds
          Length = 3513

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 131  agaagctctctggatatcag 150
            ||||||||||||||||||||
Sbjct: 1290 agaagctctctggatatcag 1271
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>gb|AF060096.1| Lama glama microsatellite LCA8 repeat region
          Length = 593

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 572 catttagttggtgtataaca 591
           ||||||||||||||||||||
Sbjct: 377 catttagttggtgtataaca 358
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>gb|AC102654.7| Mus musculus chromosome 1, clone RP23-2K13, complete sequence
          Length = 245404

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 322    aatttactcttcttattctattat 345
              ||||||||||| ||||||||||||
Sbjct: 208002 aatttactctttttattctattat 207979
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>ref|XM_580955.2| PREDICTED: Bos taurus similar to Protein AATF
           (Apoptosis-antagonizing transcription factor)
           (Rb-binding protein Che-1) (LOC504783), partial mRNA
          Length = 1381

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  ctgctccagctgcagcgcca 68
           ||||||||||||||||||||
Sbjct: 570 ctgctccagctgcagcgcca 551
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>ref|XM_456065.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F22066g predicted mRNA
          Length = 11295

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 498  cagctttgttgcatgttgct 517
            ||||||||||||||||||||
Sbjct: 2198 cagctttgttgcatgttgct 2217
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>gb|AC164600.5| Mus musculus chromosome 1, clone RP23-366M5, complete sequence
          Length = 191581

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 322    aatttactcttcttattctattat 345
              ||||||||||| ||||||||||||
Sbjct: 182096 aatttactctttttattctattat 182119
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>ref|XM_862407.1| PREDICTED: Canis familiaris similar to Protein AATF
           (Apoptosis-antagonizing transcription factor)
           (Rb-binding protein Che-1), transcript variant 2
           (LOC480595), mRNA
          Length = 2081

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  ctgctccagctgcagcgcca 68
           ||||||||||||||||||||
Sbjct: 183 ctgctccagctgcagcgcca 164
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>ref|XM_537715.2| PREDICTED: Canis familiaris similar to Protein AATF
           (Apoptosis-antagonizing transcription factor)
           (Rb-binding protein Che-1), transcript variant 1
           (LOC480595), mRNA
          Length = 2137

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  ctgctccagctgcagcgcca 68
           ||||||||||||||||||||
Sbjct: 183 ctgctccagctgcagcgcca 164
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>gb|AC124041.3| Oryctolagus cuniculus clone LB1-44O5, complete sequence
          Length = 106159

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   gcctttcaaggaggtgaaaa 385
             ||||||||||||||||||||
Sbjct: 25231 gcctttcaaggaggtgaaaa 25250
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>gb|AC022773.17| Mus musculus chromosome X, clone RP23-157B8, complete sequence
          Length = 212031

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 248    ttaaagggaagaaggataccaaaa 271
              |||| |||||||||||||||||||
Sbjct: 119729 ttaaggggaagaaggataccaaaa 119706
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>emb|AL162493.21| Human DNA sequence from clone RP11-120L14 on chromosome 13, complete
            sequence
          Length = 158083

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  gcataaaatgttggattata 244
            ||||||||||||||||||||
Sbjct: 8454 gcataaaatgttggattata 8435
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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 498     cagctttgttgcatgttgct 517
               ||||||||||||||||||||
Sbjct: 2060130 cagctttgttgcatgttgct 2060111
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>emb|AL162351.1|ATT20L15 Arabidopsis thaliana DNA chromosome 5, BAC clone T20L15 (ESSA
           project)
          Length = 96565

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 agaagctctctggatatcag 150
           ||||||||||||||||||||
Sbjct: 149 agaagctctctggatatcag 168
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>emb|AL161946.1|ATF7A7 Arabidopsis thaliana DNA chromosome 5, BAC clone F7A7 (ESSA project)
          Length = 86690

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   agaagctctctggatatcag 150
             ||||||||||||||||||||
Sbjct: 83182 agaagctctctggatatcag 83201
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>emb|BX005078.32| Zebrafish DNA sequence from clone CH211-182N24 in linkage group 22,
             complete sequence
          Length = 135288

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 155   ttgagaagcgccgcctcctgctcaagat 182
             |||||||| ||| |||||||||||||||
Sbjct: 95216 ttgagaagagccacctcctgctcaagat 95243
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>emb|BX901939.10| Zebrafish DNA sequence from clone CH211-263C17 in linkage group 4,
              complete sequence
          Length = 181802

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 35     cctggaggcagtacctgctccagc 58
              ||||||||||| ||||||||||||
Sbjct: 129336 cctggaggcaggacctgctccagc 129359
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>emb|BX323858.12| Zebrafish DNA sequence from clone DKEY-102F10 in linkage group 14,
             complete sequence
          Length = 184463

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   ggcatttcctgcataaaatg 234
             ||||||||||||||||||||
Sbjct: 15918 ggcatttcctgcataaaatg 15937
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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    gcctttcaaggaggtgaaaa 385
              ||||||||||||||||||||
Sbjct: 755979 gcctttcaaggaggtgaaaa 755998
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     agtacctgctccagctgcag 63
              ||||||||||||||||||||
Sbjct: 929631 agtacctgctccagctgcag 929650
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>emb|BX677671.6| Mouse DNA sequence from clone RP23-468K6 on chromosome X, complete
             sequence
          Length = 118239

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 35    cctggaggcagtacctgctccagc 58
             ||||||||||| ||||||||||||
Sbjct: 47763 cctggaggcaggacctgctccagc 47740
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>emb|AJ325315.1|HSA325315 Homo sapiens genomic sequence surrounding NotI site, clone NR1-JD6R
          Length = 766

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 269 aaactgtagctaagaaggtgttgctgga 296
           ||||||| ||||||| ||||||||||||
Sbjct: 100 aaactgtcgctaagatggtgttgctgga 127
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>emb|CR847940.9| Zebrafish DNA sequence from clone CH211-250O24 in linkage group 11,
             complete sequence
          Length = 102840

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   ggcatttcctgcataaaatg 234
             ||||||||||||||||||||
Sbjct: 56814 ggcatttcctgcataaaatg 56833
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>dbj|AP000793.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-812L3, complete
             sequences
          Length = 169152

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 373   aaggaggtgaaaattagggtgaag 396
             |||||||||||||||||| |||||
Sbjct: 38373 aaggaggtgaaaattaggctgaag 38396
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>emb|CR376825.16| Zebrafish DNA sequence from clone CH211-136O20 in linkage group 14,
              complete sequence
          Length = 176973

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    ggcatttcctgcataaaatg 234
              ||||||||||||||||||||
Sbjct: 152595 ggcatttcctgcataaaatg 152614
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>emb|AL731832.13| Mouse DNA sequence from clone RP23-180N10 on chromosome X, complete
              sequence
          Length = 144400

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 248    ttaaagggaagaaggataccaaaa 271
              |||| |||||||||||||||||||
Sbjct: 138967 ttaaggggaagaaggataccaaaa 138944
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>gb|AC151372.3| Aotus nancymaae clone CH258-368D16, complete sequence
          Length = 139897

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 502    tttgttgcatgttgctgggg 521
              ||||||||||||||||||||
Sbjct: 130157 tttgttgcatgttgctgggg 130138
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>emb|AL833774.4| Mouse DNA sequence from clone RP23-383I16 on chromosome 2, complete
             sequence
          Length = 194045

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   agctctctggatatcagaag 153
             ||||||||||||||||||||
Sbjct: 16512 agctctctggatatcagaag 16493


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,069,782
Number of Sequences: 3902068
Number of extensions: 6069782
Number of successful extensions: 118281
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117855
Number of HSP's gapped (non-prelim): 426
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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