No.
Definition
Score (bits)
E Value
1 dbj|AK100481.1| Oryza sativa (japonica cultivar-group) cDNA clon...
636
e-179
2 ref|NM_185682.1| Oryza sativa (japonica cultivar-group), Ozsa803...
577
e-161
3 dbj|AK101538.1| Oryza sativa (japonica cultivar-group) cDNA clon...
208
1e-50
4 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
196
5e-47
5 dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic D...
196
5e-47
6 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
88
4e-14
7 dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic D...
88
4e-14
8 gb|AY105829.1| Zea mays PCO081818 mRNA sequence
56
1e-04
9 dbj|AP004468.1| Lotus japonicus genomic DNA, chromosome 4, clone...
56
1e-04
10 dbj|AK069542.1| Oryza sativa (japonica cultivar-group) cDNA clon...
54
5e-04
11 gb|AC151665.26| Medicago truncatula clone mth2-7k4, complete seq...
52
0.002
12 gb|AC174354.6| Medicago truncatula clone mth2-8m12, complete seq...
52
0.002
13 ref|NM_122911.3| Arabidopsis thaliana binding AT5G35200 mRNA, co...
48
0.031
14 gb|AC182813.8| Medicago truncatula clone mth2-69k1, complete seq...
48
0.031
15 gb|BT000375.1| Arabidopsis thaliana unknown protein (At5g35200) ...
48
0.031
16 gb|AY081284.1| Arabidopsis thaliana unknown protein (At5g35200) ...
48
0.031
17 emb|BX830221.1|CNS09YUS Arabidopsis thaliana Full-length cDNA Co...
48
0.031
18 dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic D...
48
0.031
19 gb|AC069233.16| Homo sapiens 3 BAC RP11-95H16 (Roswell Park Canc...
46
0.12
20 gb|AY541693.1| Oreochromis mossambicus extracellular calcium-sen...
42
1.9
21 gb|AF016666.1| Caenorhabditis elegans cosmid B0281, complete seq...
42
1.9
22 gb|AC123547.15| Medicago truncatula clone mth2-26n6, complete se...
40
7.5
23 gb|DQ397640.1| Cenarchaeum symbiosum clone C18F05, complete sequ...
40
7.5
24 gb|DQ397620.1| Cenarchaeum symbiosum clone C07H12, complete sequ...
40
7.5
25 gb|DQ397557.1| Cenarchaeum symbiosum clone C18C03, complete sequ...
40
7.5
26 gb|DQ402427.1| Leishmania donovani amino acid permease 7 gene, c...
40
7.5
27 gb|AC005560.3| Arabidopsis thaliana chromosome 2 clone F2I9 map ...
40
7.5
28 emb|CR523041.1| Gallus gallus finished cDNA, clone ChEST563g24
40
7.5
29 gb|AC154596.2| Mus musculus BAC clone RP23-354C17 from chromosom...
40
7.5
30 emb|BX120001.10| Zebrafish DNA sequence from clone CH211-217J8 i...
40
7.5
31 gb|AC092168.4| Homo sapiens BAC clone RP11-784K9 from 2, complet...
40
7.5
32 dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic D...
40
7.5
33 dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic D...
40
7.5
34 emb|AL161665.5|CNS01RH9 Human chromosome 14 DNA sequence BAC R-4...
40
7.5
35 gb|AC140220.4| Mus musculus BAC clone RP23-279P6 from 5, complet...
40
7.5
>dbj|AP008212.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 196 bits (99), Expect = 5e-47
Identities = 132/143 (92%)
Strand = Plus / Minus
Query: 230 ggttgcactgaagacattaattgtcatacatcgtgcccttcgagaagttgaccccacgtt 289
||||||| ||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 3804330 ggttgcattgaagacattaattgtcatacatcgcgcccttcgagaggtcgatcccacttt 3804271
Query: 290 tcgtgaagagcttattaattatggcagatctagatcacatatgctaaacatggcctactt 349
||||||||||||||| ||||||||||||||||| || |||||||||||| ||||||||||
Sbjct: 3804270 tcgtgaagagcttatcaattatggcagatctaggtcccatatgctaaacttggcctactt 3804211
Query: 350 taaggatgattctagttcaggag 372
|||||||||||||||| ||||||
Sbjct: 3804210 taaggatgattctagtgcaggag 3804188
Score = 149 bits (75), Expect = 1e-32
Identities = 96/103 (93%)
Strand = Plus / Minus
Query: 371 agcttgggattattctgcatgggtacgcacttatgcttcatatttggaagagagacttga 430
||||||||||| |||||| ||| ||||||||||||||| |||||| ||||||||||||||
Sbjct: 3804090 agcttgggatttttctgcttggatacgcacttatgctttatatttagaagagagacttga 3804031
Query: 431 atgtttcagagtgctgaagtatgatgtggagtcagatcctccg 473
||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 3804030 atgtttccgagtgctgaagtatgatgtggagacagatcctccg 3803988
Score = 91.7 bits (46), Expect = 2e-15
Identities = 79/90 (87%)
Strand = Plus / Minus
Query: 143 ttccatttctgctgcaaggccaagggcagacgtagcttactgcattcatgcccttgcgag 202
||||||||||||| |||||||| | ||||| |||||||||||||| ||||||||||| ||
Sbjct: 3804907 ttccatttctgcttcaaggccacgagcagatgtagcttactgcatccatgcccttgcaag 3804848
Query: 203 gcgcctttcaaagacacggaactgggcggt 232
|| ||||| |||||||| || ||||||||
Sbjct: 3804847 acgtctttccaagacacgcaattgggcggt 3804818
Score = 81.8 bits (41), Expect = 2e-12
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 3 cttggtgccctcaaggacaccacaactgtgagcctggcgaaagtgaacagcgattacaag 62
||||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||| |||
Sbjct: 3805435 cttggagccctcaaggacaccacaactgtgagcttggcaaaagtgaacagtgattataag 3805376
Query: 63 g 63
|
Sbjct: 3805375 g 3805375
Score = 79.8 bits (40), Expect = 9e-12
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 61 aggaactggacattgcaattgtgaaggccacaaaccatagcgagcgtccatcgagggaga 120
||||| |||| ||||||||||||||||| ||||||||| ||||||||||| | |||||
Sbjct: 3805265 aggaattggatattgcaattgtgaaggctacaaaccatgttgagcgtccatcaaaggaga 3805206
Query: 121 agtacataagag 132
||||||||||||
Sbjct: 3805205 agtacataagag 3805194
Score = 71.9 bits (36), Expect = 2e-09
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 480 cgggatcttgatactgttggtgtgctagatcatctgccaccactgcagcaacttcttttc 539
||||||||||| |||| || | |||| |||||||||||| || | ||||||||||||||
Sbjct: 3803506 cgggatcttgaaactggtgatttgcttgatcatctgccagcattacagcaacttcttttt 3803447
Query: 540 cggcttcttgcttgcc 555
||||| ||||||||||
Sbjct: 3803446 cggctccttgcttgcc 3803431
>dbj|AP002069.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0015E04
Length = 152046
Score = 196 bits (99), Expect = 5e-47
Identities = 132/143 (92%)
Strand = Plus / Minus
Query: 230 ggttgcactgaagacattaattgtcatacatcgtgcccttcgagaagttgaccccacgtt 289
||||||| ||||||||||||||||||||||||| ||||||||||| || || ||||| ||
Sbjct: 62284 ggttgcattgaagacattaattgtcatacatcgcgcccttcgagaggtcgatcccacttt 62225
Query: 290 tcgtgaagagcttattaattatggcagatctagatcacatatgctaaacatggcctactt 349
||||||||||||||| ||||||||||||||||| || |||||||||||| ||||||||||
Sbjct: 62224 tcgtgaagagcttatcaattatggcagatctaggtcccatatgctaaacttggcctactt 62165
Query: 350 taaggatgattctagttcaggag 372
|||||||||||||||| ||||||
Sbjct: 62164 taaggatgattctagtgcaggag 62142
Score = 149 bits (75), Expect = 1e-32
Identities = 96/103 (93%)
Strand = Plus / Minus
Query: 371 agcttgggattattctgcatgggtacgcacttatgcttcatatttggaagagagacttga 430
||||||||||| |||||| ||| ||||||||||||||| |||||| ||||||||||||||
Sbjct: 62044 agcttgggatttttctgcttggatacgcacttatgctttatatttagaagagagacttga 61985
Query: 431 atgtttcagagtgctgaagtatgatgtggagtcagatcctccg 473
||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 61984 atgtttccgagtgctgaagtatgatgtggagacagatcctccg 61942
Score = 91.7 bits (46), Expect = 2e-15
Identities = 79/90 (87%)
Strand = Plus / Minus
Query: 143 ttccatttctgctgcaaggccaagggcagacgtagcttactgcattcatgcccttgcgag 202
||||||||||||| |||||||| | ||||| |||||||||||||| ||||||||||| ||
Sbjct: 62861 ttccatttctgcttcaaggccacgagcagatgtagcttactgcatccatgcccttgcaag 62802
Query: 203 gcgcctttcaaagacacggaactgggcggt 232
|| ||||| |||||||| || ||||||||
Sbjct: 62801 acgtctttccaagacacgcaattgggcggt 62772
Score = 81.8 bits (41), Expect = 2e-12
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 3 cttggtgccctcaaggacaccacaactgtgagcctggcgaaagtgaacagcgattacaag 62
||||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||| |||
Sbjct: 63389 cttggagccctcaaggacaccacaactgtgagcttggcaaaagtgaacagtgattataag 63330
Query: 63 g 63
|
Sbjct: 63329 g 63329
Score = 79.8 bits (40), Expect = 9e-12
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 61 aggaactggacattgcaattgtgaaggccacaaaccatagcgagcgtccatcgagggaga 120
||||| |||| ||||||||||||||||| ||||||||| ||||||||||| | |||||
Sbjct: 63219 aggaattggatattgcaattgtgaaggctacaaaccatgttgagcgtccatcaaaggaga 63160
Query: 121 agtacataagag 132
||||||||||||
Sbjct: 63159 agtacataagag 63148
Score = 71.9 bits (36), Expect = 2e-09
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 480 cgggatcttgatactgttggtgtgctagatcatctgccaccactgcagcaacttcttttc 539
||||||||||| |||| || | |||| |||||||||||| || | ||||||||||||||
Sbjct: 61460 cgggatcttgaaactggtgatttgcttgatcatctgccagcattacagcaacttcttttt 61401
Query: 540 cggcttcttgcttgcc 555
||||| ||||||||||
Sbjct: 61400 cggctccttgcttgcc 61385
>dbj|AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 87.7 bits (44), Expect = 4e-14
Identities = 110/132 (83%)
Strand = Plus / Plus
Query: 230 ggttgcactgaagacattaattgtcatacatcgtgcccttcgagaagttgaccccacgtt 289
||||||||| ||||| ||||| |||||||| |||||||| || |||||||| ||||| ||
Sbjct: 34276011 ggttgcacttaagaccttaatcgtcatacaccgtgccctacgggaagttgatcccacttt 34276070
Query: 290 tcgtgaagagcttattaattatggcagatctagatcacatatgctaaacatggcctactt 349
||||| ||||| |||| ||||| ||||| || |||||||||| | || |||||||
Sbjct: 34276071 ccgtgatgagctcattagctatggaagatccagtacacatatgcttcatttgtcctactt 34276130
Query: 350 taaggatgattc 361
||||||||||||
Sbjct: 34276131 taaggatgattc 34276142
Score = 63.9 bits (32), Expect = 5e-07
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 371 agcttgggattattctgcatgggtacgcacttatgcttcatatttggaagagagacttga 430
|||||||||||||||||||||||| |||| |||||| | || || ||||||||||| ||
Sbjct: 34276259 agcttgggattattctgcatgggttcgcaattatgcattgtacttagaagagagactaga 34276318
Query: 431 atgtttcagagtgctgaagtatga 454
|| |||| | || ||||| |||||
Sbjct: 34276319 atctttccgtgtactgaaatatga 34276342
Score = 58.0 bits (29), Expect = 3e-05
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 168 gcagacgtagcttactgcattcatgcccttgcgaggcgcctttcaaagacacggaactgg 227
||||| ||||| |||||||| | ||| |||| ||||| |||||||||||||| ||||||
Sbjct: 34275666 gcagatgtagcatactgcatccgtgctcttggtaggcgtctttcaaagacacgcaactgg 34275725
Query: 228 gcggt 232
|||||
Sbjct: 34275726 gcggt 34275730
Score = 52.0 bits (26), Expect = 0.002
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 67 tggacattgcaattgtgaaggccacaaaccatagcgagcgtccatcgagggagaagtaca 126
|||| ||||| ||||||||||||||||||||| |||| || | | | |||||||||||
Sbjct: 34275455 tggatattgctattgtgaaggccacaaaccatgtcgagaatctaccaaaggagaagtaca 34275514
Query: 127 taagag 132
||||||
Sbjct: 34275515 taagag 34275520
Score = 48.1 bits (24), Expect = 0.031
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 4 ttggtgccctcaaggacaccacaactgtgagcctggcgaaagtgaacagcgattacaagg 63
|||| ||||| |||||||| ||||| || ||| | || ||||||||||||||||| ||||
Sbjct: 34275306 ttggagccctaaaggacacaacaaccgtaagcatagcaaaagtgaacagcgattataagg 34275365
Score = 48.1 bits (24), Expect = 0.031
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 67 tggacattgcaattgtgaaggccacaaaccat 98
|||| |||||||||||||||||||| ||||||
Sbjct: 4139744 tggatattgcaattgtgaaggccaccaaccat 4139713
Score = 40.1 bits (20), Expect = 7.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 128 aagagaaattttcctttcca 147
||||||||||||||||||||
Sbjct: 30664288 aagagaaattttcctttcca 30664307
>dbj|AP005056.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0689B12
Length = 154745
Score = 87.7 bits (44), Expect = 4e-14
Identities = 110/132 (83%)
Strand = Plus / Plus
Query: 230 ggttgcactgaagacattaattgtcatacatcgtgcccttcgagaagttgaccccacgtt 289
||||||||| ||||| ||||| |||||||| |||||||| || |||||||| ||||| ||
Sbjct: 111284 ggttgcacttaagaccttaatcgtcatacaccgtgccctacgggaagttgatcccacttt 111343
Query: 290 tcgtgaagagcttattaattatggcagatctagatcacatatgctaaacatggcctactt 349
||||| ||||| |||| ||||| ||||| || |||||||||| | || |||||||
Sbjct: 111344 ccgtgatgagctcattagctatggaagatccagtacacatatgcttcatttgtcctactt 111403
Query: 350 taaggatgattc 361
||||||||||||
Sbjct: 111404 taaggatgattc 111415
Score = 63.9 bits (32), Expect = 5e-07
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 371 agcttgggattattctgcatgggtacgcacttatgcttcatatttggaagagagacttga 430
|||||||||||||||||||||||| |||| |||||| | || || ||||||||||| ||
Sbjct: 111532 agcttgggattattctgcatgggttcgcaattatgcattgtacttagaagagagactaga 111591
Query: 431 atgtttcagagtgctgaagtatga 454
|| |||| | || ||||| |||||
Sbjct: 111592 atctttccgtgtactgaaatatga 111615
Score = 58.0 bits (29), Expect = 3e-05
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 168 gcagacgtagcttactgcattcatgcccttgcgaggcgcctttcaaagacacggaactgg 227
||||| ||||| |||||||| | ||| |||| ||||| |||||||||||||| ||||||
Sbjct: 110939 gcagatgtagcatactgcatccgtgctcttggtaggcgtctttcaaagacacgcaactgg 110998
Query: 228 gcggt 232
|||||
Sbjct: 110999 gcggt 111003
Score = 52.0 bits (26), Expect = 0.002
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 67 tggacattgcaattgtgaaggccacaaaccatagcgagcgtccatcgagggagaagtaca 126
|||| ||||| ||||||||||||||||||||| |||| || | | | |||||||||||
Sbjct: 110728 tggatattgctattgtgaaggccacaaaccatgtcgagaatctaccaaaggagaagtaca 110787
Query: 127 taagag 132
||||||
Sbjct: 110788 taagag 110793
Score = 48.1 bits (24), Expect = 0.031
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 4 ttggtgccctcaaggacaccacaactgtgagcctggcgaaagtgaacagcgattacaagg 63
|||| ||||| |||||||| ||||| || ||| | || ||||||||||||||||| ||||
Sbjct: 110579 ttggagccctaaaggacacaacaaccgtaagcatagcaaaagtgaacagcgattataagg 110638
>dbj|AP004468.1 | Lotus japonicus genomic DNA, chromosome 4, clone:LjT09A24, TM0003,
complete sequence
Length = 88828
Score = 56.0 bits (28), Expect = 1e-04
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 375 tgggattattctgcatgggtacgcacttatgcttcatatttggaagagagacttgaatgt 434
|||||||||||||||||||| |||||||| || | || |||||| || || || ||||||
Sbjct: 21937 tgggattattctgcatgggtccgcacttacgcattatttttggaggaaaggctggaatgt 21996
Query: 435 ttcagagtgctgaagtatga 454
|| | ||| ||||||||||
Sbjct: 21997 tttcgtgtgttgaagtatga 22016
Score = 42.1 bits (21), Expect = 1.9
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 273 gaagttgaccccacgtttcgtgaagagcttattaattatgg 313
||||| || ||||| |||| ||||||||| |||||||||||
Sbjct: 21736 gaagtggatcccacatttcatgaagagctcattaattatgg 21776
>gb|AC140220.4 | Mus musculus BAC clone RP23-279P6 from 5, complete sequence
Length = 182156
Score = 40.1 bits (20), Expect = 7.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 324 tcacatatgctaaacatggc 343
||||||||||||||||||||
Sbjct: 51660 tcacatatgctaaacatggc 51679
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,850,039
Number of Sequences: 3902068
Number of extensions: 4850039
Number of successful extensions: 100673
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100503
Number of HSP's gapped (non-prelim): 166
length of query: 555
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 532
effective length of database: 17,143,297,704
effective search space: 9120234378528
effective search space used: 9120234378528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)