ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags32j08 |
|---|---|
| Clone Library Name | barley_pub |
>PP2CG_MOUSE (Q61074) Protein phosphatase 2C isoform gamma (EC 3.1.3.16)| (PP2C-gamma) (Protein phosphatase magnesium-dependent 1 gamma) (Protein phosphatase 1C) (Fibroblast growth factor-inducible protein 13) (FIN13) Length = 542 Score = 48.5 bits (114), Expect = 1e-05 Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 1/49 (2%) Frame = +3 Query: 45 LSAVCERVLDRCLAPSTMG-GDGCDNMTMILVQFKKPVSDKKNADAGEQ 188 LS++ E +LD+CLAP T G G GCDNMT I++ FK + + A++G++ Sbjct: 469 LSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFKPRNTVELQAESGKR 517
>PP2CG_HUMAN (O15355) Protein phosphatase 2C isoform gamma (EC 3.1.3.16)| (PP2C-gamma) (Protein phosphatase magnesium-dependent 1 gamma) (Protein phosphatase 1C) Length = 546 Score = 47.0 bits (110), Expect = 4e-05 Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 1/49 (2%) Frame = +3 Query: 45 LSAVCERVLDRCLAPSTMG-GDGCDNMTMILVQFKKPVSDKKNADAGEQ 188 LS++ E +LD+CLAP T G G GCDNMT I++ FK + + ++G++ Sbjct: 472 LSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFKPRNTAELQPESGKR 520
>PP2C2_CAEEL (P49596) Probable protein phosphatase 2C T23F11.1 (EC 3.1.3.16)| (PP2C) Length = 356 Score = 46.2 bits (108), Expect = 7e-05 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Frame = +3 Query: 12 FIHEHIHTESTLSAVCERVLDRCLAPST-MGGDGCDNMTMILV 137 F+ E + + ++CE +L RCLAP MGG GCDNMT++LV Sbjct: 242 FVREKLAEKRDPQSICEELLTRCLAPDCQMGGLGCDNMTVVLV 284
>PP2CG_BOVIN (P79126) Protein phosphatase 2C isoform gamma (EC 3.1.3.16)| (PP2C-gamma) (Protein phosphatase magnesium-dependent 1 gamma) (Protein phosphatase 1B) (Magnesium-dependent calcium inhibitable phosphatase) (MCPP) Length = 543 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 1/49 (2%) Frame = +3 Query: 45 LSAVCERVLDRCLAPSTMG-GDGCDNMTMILVQFKKPVSDKKNADAGEQ 188 LS++ E +LD+CLAP T G G GCDNMT I++ FK + ++G++ Sbjct: 470 LSSIVEYLLDQCLAPDTSGDGTGCDNMTCIIICFKPRNTAAPQPESGKR 518
>PP2C_PARTE (P49444) Protein phosphatase 2C (EC 3.1.3.16) (PP2C)| Length = 300 Score = 42.7 bits (99), Expect = 8e-04 Identities = 20/39 (51%), Positives = 24/39 (61%) Frame = +3 Query: 33 TESTLSAVCERVLDRCLAPSTMGGDGCDNMTMILVQFKK 149 TE L E +LD+ LAP T G GCDNMT ILV ++ Sbjct: 262 TEELLKKAAEDLLDQLLAPDTSQGTGCDNMTTILVYLRR 300
>PP2C2_SCHPO (Q09172) Protein phosphatase 2C homolog 2 (EC 3.1.3.16) (PP2C-2)| Length = 370 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Frame = +3 Query: 12 FIHEHIHTESTLSAVCERVLDRCLAPSTMG-GDGCDNMTMILVQF 143 F+ I +L +CE ++DRC+A ++ G GCDNMT+ +V F Sbjct: 247 FVRRGIVARQSLEVICENLMDRCIASNSESCGIGCDNMTICIVAF 291
>PP2C1_CAEEL (P49595) Probable protein phosphatase 2C F42G9.1 (EC 3.1.3.16)| (PP2C) Length = 491 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = +3 Query: 12 FIHEHIHTESTLSAVCERVLDRCLAPSTMG-GDGCDNMTMILVQFKK 149 F+ + + S+ + VC+ + D CLA ST G G GCDNMT+I F + Sbjct: 442 FVRDLLAKGSSCAEVCDALCDACLADSTDGDGTGCDNMTVICTTFDR 488
>PP2C2_YEAST (P39966) Protein phosphatase 2C homolog 2 (EC 3.1.3.16) (PP2C-2)| Length = 464 Score = 41.2 bits (95), Expect = 0.002 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Frame = +3 Query: 15 IHEHIHTESTLSAVCERVLDRCLAPSTMG-GDGCDNMTMILVQFKKPVSD 161 +H + TL+ + R++D C AP+T G G GCDNM++++V K D Sbjct: 249 VHLGLREGKTLNEISSRIIDVCCAPTTEGTGIGCDNMSIVVVALLKEGED 298
>PP2C3_YEAST (P34221) Protein phosphatase 2C homolog 3 (EC 3.1.3.16) (PP2C-3)| Length = 468 Score = 36.2 bits (82), Expect = 0.077 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%) Frame = +3 Query: 42 TLSAVCERVLDRCLAPSTMG-GDGCDNMTMILVQFKK 149 TLS + R++D C +P+T G G GCDNM++ +V K Sbjct: 259 TLSDISSRIVDVCCSPTTEGSGIGCDNMSISIVALLK 295
>PP2C3_SCHPO (Q09173) Protein phosphatase 2C homolog 3 (EC 3.1.3.16) (PP2C-3)| Length = 414 Score = 34.3 bits (77), Expect = 0.29 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = +3 Query: 12 FIHEHIHTESTLSAVCERVLDRCLAPST-MGGDGCDNMTMILV 137 F+ I ++L + E ++D C+A T G GCDNMT+ +V Sbjct: 244 FVRRGIVAGTSLEKIAENLMDNCIASDTETTGLGCDNMTVCIV 286
>ELF1_HUMAN (P32519) ETS-related transcription factor Elf-1 (E74-like factor 1)| Length = 619 Score = 33.5 bits (75), Expect = 0.50 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 7/63 (11%) Frame = -2 Query: 351 IQSIPPPQSAHNFTLT--TLHP-----RQCQEP*TSAPVVAEPSN*RLHSLNLKTLPCLS 193 +Q++P ++A T+ TL+ R Q P T PVV P N +LH++ L+T+P + Sbjct: 392 VQAVPEGEAARTSTMQDETLNSSVQSIRTIQAP-TQVPVVVSPRNQQLHTVTLQTVPLTT 450 Query: 192 QIA 184 IA Sbjct: 451 VIA 453
>PP2CA_MOUSE (P49443) Protein phosphatase 2C isoform alpha (EC 3.1.3.16)| (PP2C-alpha) (IA) (Protein phosphatase 1A) Length = 382 Score = 32.0 bits (71), Expect = 1.4 Identities = 19/61 (31%), Positives = 31/61 (50%) Frame = +3 Query: 12 FIHEHIHTESTLSAVCERVLDRCLAPSTMGGDGCDNMTMILVQFKKPVSDKKNADAGEQS 191 F+ + L VC V+D CL + DNM++IL+ F P + K +A+A ++ Sbjct: 253 FVRSRLEVTDDLEKVCNEVVDTCLYKGSR-----DNMSVILICF--PSAPKVSAEAVKKE 305 Query: 192 A 194 A Sbjct: 306 A 306
>PP2CA_RAT (P20650) Protein phosphatase 2C isoform alpha (EC 3.1.3.16)| (PP2C-alpha) (IA) (Protein phosphatase 1A) Length = 382 Score = 31.6 bits (70), Expect = 1.9 Identities = 19/61 (31%), Positives = 31/61 (50%) Frame = +3 Query: 12 FIHEHIHTESTLSAVCERVLDRCLAPSTMGGDGCDNMTMILVQFKKPVSDKKNADAGEQS 191 F+ + L VC V+D CL + DNM++IL+ F P + K +A+A ++ Sbjct: 253 FVRSRLEVTDDLEKVCNEVVDTCLYKGSR-----DNMSVILICF--PNAPKVSAEAVKKE 305 Query: 192 A 194 A Sbjct: 306 A 306
>PP2CA_RABIT (P35814) Protein phosphatase 2C isoform alpha (EC 3.1.3.16)| (PP2C-alpha) (IA) (Protein phosphatase 1A) Length = 382 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/61 (29%), Positives = 30/61 (49%) Frame = +3 Query: 12 FIHEHIHTESTLSAVCERVLDRCLAPSTMGGDGCDNMTMILVQFKKPVSDKKNADAGEQS 191 F+ + L VC V+D CL + DNM++IL+ F P + K + +A ++ Sbjct: 253 FVRSRLEVTDDLEKVCNEVVDTCLYKGSR-----DNMSVILICF--PNAPKVSPEAVKKE 305 Query: 192 A 194 A Sbjct: 306 A 306
>PP2CA_HUMAN (P35813) Protein phosphatase 2C isoform alpha (EC 3.1.3.16)| (PP2C-alpha) (IA) (Protein phosphatase 1A) Length = 382 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/61 (29%), Positives = 30/61 (49%) Frame = +3 Query: 12 FIHEHIHTESTLSAVCERVLDRCLAPSTMGGDGCDNMTMILVQFKKPVSDKKNADAGEQS 191 F+ + L VC V+D CL + DNM++IL+ F P + K + +A ++ Sbjct: 253 FVRSRLEVTDDLEKVCNEVVDTCLYKGSR-----DNMSVILICF--PNAPKVSPEAVKKE 305 Query: 192 A 194 A Sbjct: 306 A 306
>YBI3_SCHPO (O42910) Hypothetical protein C16A3.03c in chromosome II| Length = 658 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -1 Query: 133 KIMVMLSHPSPPI-VDGARHLSSTLSHTAERVLSVCICSWIN 11 K ++ ++ SPP + G + S LS T VL+ IC W+N Sbjct: 452 KDLICITQSSPPCNISGIKPGSLKLSPTTNTVLAKSICYWLN 493
>POLG_HRV16 (Q82122) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2152 Score = 29.3 bits (64), Expect = 9.4 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Frame = -1 Query: 274 VDLSTSGRGAFQLTLTLTEPQDSSLPFADCSPASAFFLSLTGFLNCTKIMVMLSHPSPPI 95 +D+ + + LT+T P D S F + + FL GF K ++ HP+ P+ Sbjct: 2029 LDMEAIAKEGQKYGLTIT-PADKSSEFKELDYGNVTFLK-RGFRQDDKYKFLI-HPTFPV 2085 Query: 94 VDGARHLSSTL--SHTAERVLSVCICSWINPP 5 + + T S E VLS+C W N P Sbjct: 2086 EEIYESIRWTKKPSQMQEHVLSLCHLMWHNGP 2117
>UGT3_PLEPL (Q91280) UDP-glucuronosyltransferase (EC 2.4.1.17) (UDPGT)| (Fragment) Length = 472 Score = 29.3 bits (64), Expect = 9.4 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%) Frame = +3 Query: 510 IIWDVLLCCSFCV--CCKRG 563 ++W L CC FC CC+RG Sbjct: 446 VLWVTLKCCLFCTRRCCRRG 465
>SYI_THEVO (Q97AG7) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1028 Score = 29.3 bits (64), Expect = 9.4 Identities = 10/29 (34%), Positives = 19/29 (65%) Frame = -1 Query: 538 LQHNKTSQIMNLGGVDDPNNGLYKDEQSG 452 L H T +++N+ + DP+ G +DE++G Sbjct: 901 LDHELTGEMLNISTIPDPDYGYSRDEKNG 929
>ADEC_GLUOX (Q5FQ87) Adenine deaminase (EC 3.5.4.2) (Adenase) (Adenine aminase)| Length = 565 Score = 29.3 bits (64), Expect = 9.4 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 3 VGGFIHEHIHTESTLSAVCERVLDRCLAPSTMGGDGCD 116 V GFI H+H ES+L E DRC+ P + CD Sbjct: 68 VPGFIDTHLHVESSLVTPFE--FDRCVLPHGVTTAICD 103
>PBPB_HAEIN (P45345) Penicillin-binding protein 1B (PBP-1b) (PBP1b) (Murein| polymerase) [Includes: Penicillin-insensitive transglycosylase (EC 2.4.1.129) (Peptidoglycan glycosyltransferase) (Peptidoglycan TGase); Penicillin-sensitive transpeptidase (EC 3. Length = 781 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +3 Query: 387 CEPRLNHIVWRNSEFLARSFCEPLCSSLYKPLFGSSTPPKFIIWDVL 527 CE +W N+ ++FC S P + TPP+ +WDVL Sbjct: 730 CESYRTIPIWLNN---GQNFCGETSSPSLTPTTETETPPQESLWDVL 773 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,641,807 Number of Sequences: 219361 Number of extensions: 2184370 Number of successful extensions: 6500 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 6114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6483 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
