ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags32j08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009488.1| Triticum aestivum clone wr1.pk0058.g3:fis, full i... 805 0.0
2dbj|AK120521.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 8e-37
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
4dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
5dbj|AK120711.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 4e-23
6dbj|AK112023.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 4e-23
7gb|AF213455.1|AF213455 Zea mays protein phosphatase type-2C (pp2... 115 2e-22
8gb|AY106158.1| Zea mays PCO109280 mRNA sequence 115 2e-22
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
10dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
11gb|AY104016.1| Zea mays PCO109282 mRNA sequence 94 6e-16
12gb|AC143339.12| Medicago truncatula clone mth2-20g20, complete s... 72 2e-09
13gb|AF378538.1| Unidentified bacterium clone FR48B7 environmental... 44 0.53
14gb|AC132616.2| Mus musculus BAC clone RP23-317F10 from chromosom... 44 0.53
15emb|BX255911.8| Zebrafish DNA sequence from clone DKEY-274C14 in... 44 0.53
16ref|XM_323955.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.1
17ref|XM_953750.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.1
18emb|AL583835.6| Human DNA sequence from clone RP11-244K5 on chro... 42 2.1
19emb|AL355497.14| Human DNA sequence from clone RP11-472G23 on ch... 42 2.1
20emb|AL135784.4| Human DNA sequence from clone RP4-687J17 on chro... 42 2.1
21emb|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cos... 42 2.1
22emb|CR406619.1| Gallus gallus finished cDNA, clone ChEST770a18 42 2.1
23gb|AC104257.12| Homo sapiens chromosome 8, clone CTD-2501M5, com... 42 2.1
24gb|AC160539.11| Mus musculus chromosome 15, clone RP24-163H9, co... 42 2.1
25ref|XM_466871.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.3
26ref|NM_001016288.2| Xenopus tropicalis hypothetical protein LOC5... 40 8.3
27gb|AY600302.1| Homo sapiens origin recognition complex, subunit ... 40 8.3
28ref|XM_747202.1| Aspergillus fumigatus Af293 protein phosphatase... 40 8.3
29gb|AC122354.4| Mus musculus BAC clone RP23-401A2 from chromosome... 40 8.3
30gb|AC124757.4| Mus musculus BAC clone RP23-116P5 from 8, complet... 40 8.3
31gb|AC102792.7| Mus musculus chromosome 7, clone RP23-370I17, com... 40 8.3
32gb|AC159140.10| Mus musculus chromosome 7, clone RP24-84I4, comp... 40 8.3
33emb|AL596211.5| Human DNA sequence from clone RP11-201A3 on chro... 40 8.3
34emb|AL355485.9| Human DNA sequence from clone RP11-240M20 on chr... 40 8.3
35emb|BX842641.1| Neurospora crassa DNA linkage group I BAC contig... 40 8.3
36emb|AL035477.6|PFMAL4P4 Plasmodium falciparum MAL4P4 40 8.3
37gb|AC021660.16| Homo sapiens 3 BAC RP11-227H4 (Roswell Park Canc... 40 8.3
38gb|AC113386.2| Homo sapiens chromosome 5 clone RP11-350H19, comp... 40 8.3
39gb|AC010928.7|AC010928 Homo sapiens chromosome 18, clone RP11-32... 40 8.3
40gb|AC019226.5| Homo sapiens BAC clone RP11-567F11 from 2, comple... 40 8.3
41gb|AC084414.2|AC084414 Arabidopsis thaliana chromosome 1 BAC F27... 40 8.3
42dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
43dbj|AK068495.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
44emb|CR761577.2| Xenopus tropicalis finished cDNA, clone TGas073n08 40 8.3
45gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 8.3
46gb|AC002365.1|AC002365 Homo sapiens chromosome X clone U177G4, U... 40 8.3 
>gb|BT009488.1| Triticum aestivum clone wr1.pk0058.g3:fis, full insert mRNA sequence
          Length = 1768

 Score =  805 bits (406), Expect = 0.0
 Identities = 532/573 (92%), Gaps = 7/573 (1%)
 Strand = Plus / Plus

                                                                        
Query: 39   agcaccctttctgcagtgtgtgaaagagtgctcgacagatgcctggctccatcaacaatg 98
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474  agcagcctttctgcagtgtgtgaaagagtgctcgacagatgcctggctccatcaacaatg 533

                                                                        
Query: 99   ggcggagacggatgcgacaacatgaccatgatcttggtgcagttcaaaaaaccagtcagt 158
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534  ggcggagacggatgcgacaacatgaccatgatcttggtgcagttcaaaaaaccagtcagt 593

                                                                        
Query: 159  gacaagaaaaatgctgacgcgggggagcaatctgcgaaaggcaaggaagagtcttgaggt 218
            ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 594  gacaagaaaaaggctgacgtgggggagcaatctgcgaaaggcaaggaagagtcttgaggt 653

                                                                        
Query: 219  tcagtgagtgtaa-gcgttaattggaaggctccgcgaccactggtgctgaggtctacggt 277
            ||| ||||| | | ||||||||   ||||||||      |||||||||||||||||||| 
Sbjct: 654  tcactgagtattacgcgttaatgcaaaggctcc------actggtgctgaggtctacggc 707

                                                                        
Query: 278  tcttgacactggcgaggatgcaaagttgtcaatgtgaaattgtgtgcactctgtggcggg 337
            ||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 708  tcttgacacgggctaggatgcaaagttgccaatgtgaaattgtgtgcactctgtggctgg 767

                                                                        
Query: 338  ggtatcgactgtatatcagccaattgctgtggttggcttgcattctgcctgcgaacccag 397
            ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 768  ggtatcgactgtatatcagtcaattgctgtggttggcgtgcattctgcctgcgaacccag 827

                                                                        
Query: 398  gttaaatcacattgtttggcgcaacagcgaattcctggcacgcagcttctgtgagccgct 457
            | |||||||||||||||||||||||| |||| ||||||||  || |||||||||||||||
Sbjct: 828  gataaatcacattgtttggcgcaacatcgaaatcctggcaatcaacttctgtgagccgct 887

                                                                        
Query: 458  ctgttcgtccttgtacaagccattgtttggatcatccacgcctcccaaattcataatttg 517
            ||||||||| |||||||| ||||  || ||||||||||||||||||||||||||||||||
Sbjct: 888  ctgttcgtcattgtacaatccatgtttcggatcatccacgcctcccaaattcataatttg 947

                                                                        
Query: 518  ggatgttttgttatgttgtagtttttgtgtgtgctgtaaacgtggctggggtgttccttt 577
            | ||||||||||||| | |||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 948  gaatgttttgttatgctatagtttgtgtgtatgctgtaaacgtggctggggtgttccttt 1007

                                             
Query: 578  gttttttggtggtatattccatgcctcagcggc 610
            |||||||||| |||||||||||||||| |||||
Sbjct: 1008 gttttttggttgtatattccatgcctctgcggc 1040



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Plus

                                                
Query: 1   cagttggtggattt-atccacgagcatatacacacgg 36
           |||||||||||||| ||||| ||||||||| ||||||
Sbjct: 267 cagttggtggatttcatccatgagcatataaacacgg 303
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>dbj|AK120521.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124L22, full
            insert sequence
          Length = 2052

 Score =  163 bits (82), Expect = 8e-37
 Identities = 131/146 (89%), Gaps = 1/146 (0%)
 Strand = Plus / Plus

                                                                        
Query: 5    tggtggattt-atccacgagcatatacacacggaaagcaccctttctgcagtgtgtgaaa 63
            |||||||||| ||||||||||||||||| | ||| ||||  |||||||||||||| ||||
Sbjct: 1186 tggtggatttcatccacgagcatatacagaaggagagcagtctttctgcagtgtgcgaaa 1245

                                                                        
Query: 64   gagtgctcgacagatgcctggctccatcaacaatgggcggagacggatgcgacaacatga 123
            ||||||||||||||||||| |||||||||||||| || ||||| ||||| ||||||||||
Sbjct: 1246 gagtgctcgacagatgcctagctccatcaacaattggtggagagggatgtgacaacatga 1305

                                      
Query: 124  ccatgatcttggtgcagttcaaaaaa 149
            ||||| |  |||||||||||||||||
Sbjct: 1306 ccatggttctggtgcagttcaaaaaa 1331
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  135 bits (68), Expect = 2e-28
 Identities = 95/104 (91%)
 Strand = Plus / Plus

                                                                           
Query: 45      ctttctgcagtgtgtgaaagagtgctcgacagatgcctggctccatcaacaatgggcgga 104
               |||||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||
Sbjct: 4453842 ctttctgcagtgtgcgaaagagtgctcgacagatgcctagctccatcaacaattggtgga 4453901

                                                           
Query: 105     gacggatgcgacaacatgaccatgatcttggtgcagttcaaaaa 148
               || ||||| ||||||||||||||| |  ||||||||||||||||
Sbjct: 4453902 gagggatgtgacaacatgaccatggttctggtgcagttcaaaaa 4453945



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 354      cagccaattgctgtggttggcttg 377
                ||||||||||||||| ||||||||
Sbjct: 25197777 cagccaattgctgtgcttggcttg 25197754



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                           
Query: 5       tggtggattt-atccacgagcatataca 31
               |||||||||| |||||||||||||||||
Sbjct: 4453696 tggtggatttcatccacgagcatataca 4453723
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>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0544B02
          Length = 156339

 Score =  135 bits (68), Expect = 2e-28
 Identities = 95/104 (91%)
 Strand = Plus / Plus

                                                                          
Query: 45     ctttctgcagtgtgtgaaagagtgctcgacagatgcctggctccatcaacaatgggcgga 104
              |||||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||
Sbjct: 137406 ctttctgcagtgtgcgaaagagtgctcgacagatgcctagctccatcaacaattggtgga 137465

                                                          
Query: 105    gacggatgcgacaacatgaccatgatcttggtgcagttcaaaaa 148
              || ||||| ||||||||||||||| |  ||||||||||||||||
Sbjct: 137466 gagggatgtgacaacatgaccatggttctggtgcagttcaaaaa 137509



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                          
Query: 5      tggtggattt-atccacgagcatataca 31
              |||||||||| |||||||||||||||||
Sbjct: 137260 tggtggatttcatccacgagcatataca 137287
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>dbj|AK120711.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001L10, full
            insert sequence
          Length = 1818

 Score =  117 bits (59), Expect = 4e-23
 Identities = 113/131 (86%)
 Strand = Plus / Plus

                                                                        
Query: 15   atccacgagcatatacacacggaaagcaccctttctgcagtgtgtgaaagagtgctcgac 74
            |||||||| || ||| |||| || |||| ||||||||| || || ||||||||||| || 
Sbjct: 1270 atccacgaacacataaacacagagagcagcctttctgcggtatgcgaaagagtgctagat 1329

                                                                        
Query: 75   agatgcctggctccatcaacaatgggcggagacggatgcgacaacatgaccatgatcttg 134
            ||||||||||||||||||||  |||| ||||| ||||||||||||||||| |||||| | 
Sbjct: 1330 agatgcctggctccatcaactttgggtggagaaggatgcgacaacatgacaatgatccta 1389

                       
Query: 135  gtgcagttcaa 145
            |||||||||||
Sbjct: 1390 gtgcagttcaa 1400
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>dbj|AK112023.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-H05, full
            insert sequence
          Length = 1693

 Score =  117 bits (59), Expect = 4e-23
 Identities = 113/131 (86%)
 Strand = Plus / Plus

                                                                        
Query: 15   atccacgagcatatacacacggaaagcaccctttctgcagtgtgtgaaagagtgctcgac 74
            |||||||| || ||| |||| || |||| ||||||||| || || ||||||||||| || 
Sbjct: 1148 atccacgaacacataaacacagagagcagcctttctgcggtatgcgaaagagtgctagat 1207

                                                                        
Query: 75   agatgcctggctccatcaacaatgggcggagacggatgcgacaacatgaccatgatcttg 134
            ||||||||||||||||||||  |||| ||||| ||||||||||||||||| |||||| | 
Sbjct: 1208 agatgcctggctccatcaactttgggtggagaaggatgcgacaacatgacaatgatccta 1267

                       
Query: 135  gtgcagttcaa 145
            |||||||||||
Sbjct: 1268 gtgcagttcaa 1278
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>gb|AF213455.1|AF213455 Zea mays protein phosphatase type-2C (pp2c-1) mRNA, complete cds
          Length = 1107

 Score =  115 bits (58), Expect = 2e-22
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                       
Query: 44  cctttctgcagtgtgtgaaagagtgctcgacagatgcctggctccatcaacaatgggcgg 103
           |||||||||||| |||||| ||||||| || ||||||||||||||||| || ||||| ||
Sbjct: 888 cctttctgcagtatgtgaaggagtgcttgatagatgcctggctccatcgaccatgggtgg 947

                                                     
Query: 104 agacggatgcgacaacatgaccatgatcttggtgcagttcaa 145
            || |||||||| |||||||| ||||||||||||||||||||
Sbjct: 948 cgagggatgcgataacatgacgatgatcttggtgcagttcaa 989
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>gb|AY106158.1| Zea mays PCO109280 mRNA sequence
          Length = 813

 Score =  115 bits (58), Expect = 2e-22
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                       
Query: 44  cctttctgcagtgtgtgaaagagtgctcgacagatgcctggctccatcaacaatgggcgg 103
           |||||||||||| |||||||||||||| || ||||||||||||||||| || ||||| ||
Sbjct: 279 cctttctgcagtatgtgaaagagtgcttgatagatgcctggctccatcgaccatgggtgg 338

                                                     
Query: 104 agacggatgcgacaacatgaccatgatcttggtgcagttcaa 145
            || |||||||| |||||||| |||||| |||||||||||||
Sbjct: 339 cgagggatgcgataacatgacgatgatcctggtgcagttcaa 380
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Minus

                                                                            
Query: 39       agcaccctttctgcagtgtgtgaaagagtgctcgacagatgcctggctccatcaacaatg 98
                |||| ||||||||| || || ||||||||||| || ||||||||||||||||||||  ||
Sbjct: 26282140 agcagcctttctgcggtatgcgaaagagtgctagatagatgcctggctccatcaactttg 26282081

                                                               
Query: 99       ggcggagacggatgcgacaacatgaccatgatcttggtgcagttcaa 145
                || ||||| ||||||||||||||||| |||||| | |||||||||||
Sbjct: 26282080 ggtggagaaggatgcgacaacatgacaatgatcctagtgcagttcaa 26282034
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>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0453H04
          Length = 175047

 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Minus

                                                                          
Query: 39     agcaccctttctgcagtgtgtgaaagagtgctcgacagatgcctggctccatcaacaatg 98
              |||| ||||||||| || || ||||||||||| || ||||||||||||||||||||  ||
Sbjct: 146680 agcagcctttctgcggtatgcgaaagagtgctagatagatgcctggctccatcaactttg 146621

                                                             
Query: 99     ggcggagacggatgcgacaacatgaccatgatcttggtgcagttcaa 145
              || ||||| ||||||||||||||||| |||||| | |||||||||||
Sbjct: 146620 ggtggagaaggatgcgacaacatgacaatgatcctagtgcagttcaa 146574
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>gb|AY104016.1| Zea mays PCO109282 mRNA sequence
          Length = 1486

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                        
Query: 63   agagtgctcgacagatgcctggctccatcaacaatgggcggagacggatgcgacaacatg 122
            ||||||||||| |||||||||||||| || || |||||||| || |||||||| ||||||
Sbjct: 1064 agagtgctcgatagatgcctggctccgtcgaccatgggcggcgagggatgcgataacatg 1123

                                   
Query: 123  accatgatcttggtgcagttcaa 145
            || |||||| |||||||||||||
Sbjct: 1124 acgatgatcctggtgcagttcaa 1146
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>gb|AC143339.12| Medicago truncatula clone mth2-20g20, complete sequence
          Length = 99993

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                         
Query: 108   ggatgcgacaacatgaccatgatcttggtgcagttcaaaaaacc 151
             |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 67137 ggatgcgataacatgacaatgatcttggtgcagttcaaaaaacc 67094
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>gb|AF378538.1| Unidentified bacterium clone FR48B7 environmental gene cassette
           EGC107, partial sequence
          Length = 1366

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 212 ttgaggttcagtgagtgtaagc 233
           ||||||||||||||||||||||
Sbjct: 948 ttgaggttcagtgagtgtaagc 927
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>gb|AC132616.2| Mus musculus BAC clone RP23-317F10 from chromosome 14, complete
             sequence
          Length = 213684

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 521   tgttttgttatgttgtagtttttgtgtgtg 550
             ||||||||| ||||||| ||||||||||||
Sbjct: 28205 tgttttgttttgttgtattttttgtgtgtg 28176
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>emb|BX255911.8| Zebrafish DNA sequence from clone DKEY-274C14 in linkage group 20,
              complete sequence
          Length = 206480

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 129    atcttggtgcagttcaaaaaac 150
              ||||||||||||||||||||||
Sbjct: 129016 atcttggtgcagttcaaaaaac 128995
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>ref|XM_323955.1| Neurospora crassa OR74A hypothetical protein (NCU04600.1) partial
           mRNA
          Length = 1320

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 111 tgcgacaacatgaccatgatc 131
           |||||||||||||||||||||
Sbjct: 853 tgcgacaacatgaccatgatc 873
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>ref|XM_953750.1| Neurospora crassa OR74A hypothetical protein (NCU04600.1) partial
           mRNA
          Length = 1320

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 111 tgcgacaacatgaccatgatc 131
           |||||||||||||||||||||
Sbjct: 853 tgcgacaacatgaccatgatc 873
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>emb|AL583835.6| Human DNA sequence from clone RP11-244K5 on chromosome 6 Contains three
             pseudogenes similar to 43kD small nuclear RNA activating
             complex polypeptide 1 (SNAPC1) (SNAP43 PTFGAMMA PTFgamma),
             a novel protein similar to UL16 binding protein 2 (ULBP2),
             the 3' end of a novel gene, a novel gene, the ULBP2 gene
             for UL16 binding protein 2 (RAET1H ALCAN-alpha) and three
             CpG islands, complete sequence
          Length = 46941

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 536   tagtttttgtgtgtgctgtaa 556
             |||||||||||||||||||||
Sbjct: 45973 tagtttttgtgtgtgctgtaa 45953



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 536   tagtttttgtgtgtgctgtaa 556
             |||||||||||||||||||||
Sbjct: 30032 tagtttttgtgtgtgctgtaa 30012



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 536  tagtttttgtgtgtgctgtaa 556
            |||||||||||||||||||||
Sbjct: 4391 tagtttttgtgtgtgctgtaa 4411
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>emb|AL355497.14| Human DNA sequence from clone RP11-472G23 on chromosome 6 Contains the
             ULBP1 gene for UL16 binding protein 1, a basic
             transcription factor 3 (BTF3) pseudogene, a pseudogene
             similar to UL16 binding protein 1 (ULBP1), two retinoic
             acid early transcript 1 (RAET1L) pseudogenes, the gene for
             retinoic acid early transcript 1 (RAET1L), a prohibitin
             (PHB) pseudogene, the ULBP3 gene for UL16 binding protein
             3, the 5' end of the PPP1R14C gene for PPP1R14C gene for
             protein phosphatase 1 regulatory (inhibitor) subunit 14C
             (KEPI NY-BR-81 CPI17-like), a novel gene and eight CpG
             islands, complete sequence
          Length = 215397

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 536   tagtttttgtgtgtgctgtaa 556
             |||||||||||||||||||||
Sbjct: 85654 tagtttttgtgtgtgctgtaa 85674
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>emb|AL135784.4| Human DNA sequence from clone RP4-687J17 on chromosome Xq26.1-26.3
             Contains the 5' end of the IGSF1 gene for immunoglobulin
             superfamily member 1 and an olfactory receptor family
             pseudogene, complete sequence
          Length = 92697

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 293   ggatgcaaagttgtcaatgtg 313
             |||||||||||||||||||||
Sbjct: 85130 ggatgcaaagttgtcaatgtg 85150
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>emb|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10
          Length = 161126

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 111    tgcgacaacatgaccatgatc 131
              |||||||||||||||||||||
Sbjct: 128944 tgcgacaacatgaccatgatc 128924
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>emb|CR406619.1| Gallus gallus finished cDNA, clone ChEST770a18
          Length = 1190

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 517 gggatgttttgttatgttgtagtttttgt 545
           ||||||||||||| ||||| |||||||||
Sbjct: 200 gggatgttttgttttgttggagtttttgt 228
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>gb|AC104257.12| Homo sapiens chromosome 8, clone CTD-2501M5, complete sequence
          Length = 167787

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 545   tgtgtgctgtaaacgtggctggggt 569
             ||||||||||| |||||||||||||
Sbjct: 97440 tgtgtgctgtagacgtggctggggt 97416
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>gb|AC160539.11| Mus musculus chromosome 15, clone RP24-163H9, complete sequence
          Length = 151529

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 521   tgttttgttatgttgtagttt 541
             |||||||||||||||||||||
Sbjct: 88102 tgttttgttatgttgtagttt 88122
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>ref|XM_466871.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3530

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 354 cagccaattgctgtggttggcttg 377
           ||||||||||||||| ||||||||
Sbjct: 420 cagccaattgctgtgcttggcttg 443
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>ref|NM_001016288.2| Xenopus tropicalis hypothetical protein LOC549042 (LOC549042), mRNA
          Length = 1909

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 573  cctttgttttttggtggtat 592
            ||||||||||||||||||||
Sbjct: 1765 cctttgttttttggtggtat 1784
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>gb|AY600302.1| Homo sapiens origin recognition complex, subunit 4-like (yeast) (ORC4L)
             gene, complete cds
          Length = 90562

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 524   tttgttatgttgtagttttt 543
             ||||||||||||||||||||
Sbjct: 49847 tttgttatgttgtagttttt 49828
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>ref|XM_747202.1| Aspergillus fumigatus Af293 protein phosphatase 2C (Afu1g09280)
           partial mRNA
          Length = 1290

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 108 ggatgcgacaacatgaccatgatc 131
           ||||| ||||||||||||||||||
Sbjct: 838 ggatgtgacaacatgaccatgatc 861
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>gb|AC122354.4| Mus musculus BAC clone RP23-401A2 from chromosome 12, complete sequence
          Length = 192581

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 575    tttgttttttggtggtatat 594
              ||||||||||||||||||||
Sbjct: 109545 tttgttttttggtggtatat 109564
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>gb|AC124757.4| Mus musculus BAC clone RP23-116P5 from 8, complete sequence
          Length = 210427

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 531    tgttgtagtttttgtgtgtgctgtaaac 558
              ||||||||||||| ||||||||| ||||
Sbjct: 157941 tgttgtagtttttctgtgtgctgaaaac 157968
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>gb|AC102792.7| Mus musculus chromosome 7, clone RP23-370I17, complete sequence
          Length = 215999

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 524   tttgttatgttgtagttttt 543
             ||||||||||||||||||||
Sbjct: 49659 tttgttatgttgtagttttt 49640
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>gb|AC159140.10| Mus musculus chromosome 7, clone RP24-84I4, complete sequence
          Length = 202318

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    caccctttctgcagtgtgtg 60
             ||||||||||||||||||||
Sbjct: 78334 caccctttctgcagtgtgtg 78315
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>emb|AL596211.5| Human DNA sequence from clone RP11-201A3 on chromosome 1, complete
             sequence
          Length = 54940

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   atgtgaaattgtgtgcactc 328
             ||||||||||||||||||||
Sbjct: 31311 atgtgaaattgtgtgcactc 31330
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>emb|AL355485.9| Human DNA sequence from clone RP11-240M20 on chromosome 13, complete
             sequence
          Length = 149684

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 533   ttgtagtttttgtgtgtgct 552
             ||||||||||||||||||||
Sbjct: 66884 ttgtagtttttgtgtgtgct 66903
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>emb|BX842641.1| Neurospora crassa DNA linkage group I BAC contig B22I21
          Length = 124321

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   gttgtcaatgtgaaattgtg 321
             ||||||||||||||||||||
Sbjct: 95827 gttgtcaatgtgaaattgtg 95808
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>emb|AL035477.6|PFMAL4P4 Plasmodium falciparum MAL4P4
          Length = 272698

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 568    gtgttcctttgttttttggtggta 591
              |||||||||||||| |||||||||
Sbjct: 125462 gtgttcctttgtttattggtggta 125485
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>gb|AC021660.16| Homo sapiens 3 BAC RP11-227H4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164567

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 417   cgcaacagcgaattcctggc 436
             ||||||||||||||||||||
Sbjct: 91093 cgcaacagcgaattcctggc 91074
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>gb|AC113386.2| Homo sapiens chromosome 5 clone RP11-350H19, complete sequence
          Length = 109953

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 145   aaaaaccagtcagtgacaagaaaa 168
             ||||||| ||||||||||||||||
Sbjct: 64741 aaaaacctgtcagtgacaagaaaa 64718
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>gb|AC010928.7|AC010928 Homo sapiens chromosome 18, clone RP11-325K19, complete sequence
          Length = 213552

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 522   gttttgttatgttgtagtttttgt 545
             ||||||||||||| ||||||||||
Sbjct: 74922 gttttgttatgttttagtttttgt 74945
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>gb|AC019226.5| Homo sapiens BAC clone RP11-567F11 from 2, complete sequence
          Length = 132444

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 524    tttgttatgttgtagttttt 543
              ||||||||||||||||||||
Sbjct: 114460 tttgttatgttgtagttttt 114441
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>gb|AC084414.2|AC084414 Arabidopsis thaliana chromosome 1 BAC F27K7 genomic sequence, complete
             sequence
          Length = 54313

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   tgttttgttatgttgtagtt 540
             ||||||||||||||||||||
Sbjct: 19909 tgttttgttatgttgtagtt 19890
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>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1469H02
          Length = 136602

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 354   cagccaattgctgtggttggcttg 377
             ||||||||||||||| ||||||||
Sbjct: 98170 cagccaattgctgtgcttggcttg 98147
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>dbj|AK068495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157D09, full
           insert sequence
          Length = 3530

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 354 cagccaattgctgtggttggcttg 377
           ||||||||||||||| ||||||||
Sbjct: 420 cagccaattgctgtgcttggcttg 443
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>emb|CR761577.2| Xenopus tropicalis finished cDNA, clone TGas073n08
          Length = 1909

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 573  cctttgttttttggtggtat 592
            ||||||||||||||||||||
Sbjct: 1765 cctttgttttttggtggtat 1784
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 415     ggcgcaacagcgaattcctg 434
               ||||||||||||||||||||
Sbjct: 3959840 ggcgcaacagcgaattcctg 3959821
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>gb|AC002365.1|AC002365 Homo sapiens chromosome X clone U177G4, U152H5, U168D5, 174A6, U172D6,
              and U186B3 from Xp22, complete sequence
          Length = 196542

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    ccagtcagtgacaagaaaaa 169
              ||||||||||||||||||||
Sbjct: 148085 ccagtcagtgacaagaaaaa 148104


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,764,435
Number of Sequences: 3902068
Number of extensions: 5764435
Number of successful extensions: 100429
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100256
Number of HSP's gapped (non-prelim): 173
length of query: 610
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 587
effective length of database: 17,143,297,704
effective search space: 10063115752248
effective search space used: 10063115752248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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