Clone Information

BLAST Search Result

Clone Name	bags32g23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY104747.1\| Zea mays PCO066213 mRNA sequence	371	2e-99
2	ref\|NM_194965.1\| Oryza sativa (japonica cultivar-group) putative...	365	1e-97
3	dbj\|AK111889.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	365	1e-97
4	gb\|AC098696.3\| Oryza sativa (japonica cultivar-group) chromosome...	184	2e-43
5	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	184	2e-43
6	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	184	2e-43
7	ref\|NM_103019.2\| Arabidopsis thaliana cysteine-type endopeptidas...	54	5e-04
8	gb\|AC006424.5\|AC006424 Arabidopsis thaliana chromosome I BAC F9L...	54	5e-04
9	ref\|XM_713669.1\| Candida albicans SC5314 putative ubiquitin-spec...	48	0.033
10	ref\|XM_387088.1\| Gibberella zeae PH-1 chromosome 4 hypothetical ...	48	0.033
11	ref\|NM_180721.1\| Arabidopsis thaliana cysteine-type endopeptidas...	42	2.0
12	ref\|NM_122126.2\| Arabidopsis thaliana cysteine-type endopeptidas...	42	2.0
13	ref\|XM_713754.1\| Candida albicans SC5314 putative ubiquitin-spec...	42	2.0
14	gb\|BT013791.1\| Lycopersicon esculentum clone 132711R, mRNA sequence	42	2.0
15	emb\|BX470077.5\| Zebrafish DNA sequence from clone CH211-136P17 i...	42	2.0
16	gb\|AF302662.1\|AF302662 Arabidopsis thaliana ubiquitin-specific p...	42	2.0
17	emb\|BX942839.9\| Zebrafish DNA sequence from clone CH211-93F2 in ...	42	2.0
18	ref\|NM_117125.3\| Arabidopsis thaliana cysteine-type endopeptidas...	40	8.0
19	ref\|NM_117127.1\| Arabidopsis thaliana cysteine-type endopeptidas...	40	8.0
20	ref\|NM_179025.1\| Arabidopsis thaliana cysteine-type endopeptidas...	40	8.0
21	ref\|NM_115445.2\| Arabidopsis thaliana anthranilate synthase AT3G...	40	8.0
22	gb\|AC136786.4\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.0
23	emb\|Z83127.1\|CET23F6 Caenorhabditis elegans Cosmid T23F6, comple...	40	8.0
24	gb\|AC073322.8\| Homo sapiens BAC clone RP11-319G5 from 7, complet...	40	8.0
25	gb\|BT010363.1\| Arabidopsis thaliana At4g10590 mRNA, complete cds	40	8.0
26	emb\|AL445217.3\| Human DNA sequence from clone RP11-335G18 on chr...	40	8.0
27	gb\|BT000615.1\| Arabidopsis thaliana anthranilate synthase alpha-...	40	8.0
28	emb\|CR628339.1\| Legionella pneumophila str. Lens plasmid pLPL, c...	40	8.0
29	emb\|AL163832.1\|ATF27K19 Arabidopsis thaliana DNA chromosome 3, B...	40	8.0
30	gb\|AC020558.4\| Homo sapiens BAC clone RP11-524F11 from 17, compl...	40	8.0
31	gb\|AF424611.1\|AF424611 Arabidopsis thaliana AT3g55870/F27K19_50 ...	40	8.0
32	gb\|AY054463.1\| Arabidopsis thaliana putative protein (At4g10590;...	40	8.0
33	ref\|NM_070031.2\| Caenorhabditis elegans RBD (RNA binding domain)...	40	8.0
34	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.0
35	gb\|AC096719.3\| Homo sapiens BAC clone RP11-14M23 from 4, complet...	40	8.0
36	gb\|AC093650.5\| Homo sapiens BAC clone RP11-364I15 from 2, comple...	40	8.0
37	gb\|AC096560.1\| Homo sapiens BAC clone RP11-241F6 from 2, complet...	40	8.0
38	gb\|BT004132.1\| Arabidopsis thaliana clone RAFL15-10-B07 (R20706)...	40	8.0
39	emb\|CT573086.9\| Mouse DNA sequence from clone RP23-163K5 on chro...	40	8.0
40	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.0
41	dbj\|AP003155.1\| Mus musculus genomic DNA, chromosome 16q clone:R...	40	8.0

>gb|AY104747.1| Zea mays PCO066213 mRNA sequence
          Length = 1112

 Score =  371 bits (187), Expect = 2e-99
 Identities = 367/427 (85%)
 Strand = Plus / Plus

                                                                       
Query: 49  tgtcaaagaaaacacggcaagaagcagtcaacttattttcatgcttggatgcttttctga 108
           |||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 160 tgtcaaagaagacccgtcaagaagcagtcaatttattttcatgcttggatgcttttctga 219

                                                                       
Query: 109 aggacgaacctctaggccctgatgacatgtggtactgtccttgctgcaaggagcacagac 168
           |||| || |||||||| || ||||| ||||||||||||||| | |||||||| ||||| |
Sbjct: 220 aggaggagcctctagggccagatgatatgtggtactgtcctgggtgcaaggaacacaggc 279

                                                                       
Query: 169 aggctagtaagaaactcgacttgtggaggttgcctgagatattggtggtccacttaaaga 228
           | ||||| |||||||| ||||||||||||||||||||||||||||| || || || || |
Sbjct: 280 aagctagcaagaaactggacttgtggaggttgcctgagatattggtagttcatttgaaaa 339

                                                                       
Query: 229 ggttttcatacagccgttatatgaaaaataagcttgatacctttgtgaactttccaatcc 288
           |||| || |||||||| |||||||| |||||||||||||| |||||||||||||| ||||
Sbjct: 340 ggttctcgtacagccggtatatgaagaataagcttgatacatttgtgaactttccgatcc 399

                                                                       
Query: 289 atgatctcgatatgagcaaatacgcaaagcacacatcaggaggcgaccagccgcacatct 348
           |||| ||| |||||||||| || |  ||||  |||||| |||| |||||||  | | | |
Sbjct: 400 atgacctcaatatgagcaagtatgtgaagcctacatcaagaggtgaccagcaccccgtgt 459

                                                                       
Query: 349 atgaactctatgcggtgataaatcattatggtggtttgggaggtggtcactattctgcct 408
           ||||||||||||| ||||||||||||||||| ||| | || ||||| ||||| ||||| |
Sbjct: 460 atgaactctatgcagtgataaatcattatggcggtctcggtggtggacactactctgcat 519

                                                                       
Query: 409 atgcgaagttaatagaagaagatagctggtatcattttgatgatagtcatgtctcctctg 468
           |||||||| || | ||||| || |  ||||||||||||||||| |||||||| |||||||
Sbjct: 520 atgcgaagctagttgaagaggacaattggtatcattttgatgacagtcatgtttcctctg 579

                  
Query: 469 tcaatga 475
           | |||||
Sbjct: 580 ttaatga 586

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>ref|NM_194965.1| Oryza sativa (japonica cultivar-group) putative ubiquitin carboxyl
            terminal hydrolase (OSJNBa0050E08.11), mRNA
          Length = 2673

 Score =  365 bits (184), Expect = 1e-97
 Identities = 408/482 (84%), Gaps = 3/482 (0%)
 Strand = Plus / Plus

                                                                        
Query: 36   aagccaggattcttgtcaaagaaaacacggcaagaagcagtcaacttattttcatgcttg 95
            ||||| |||||  ||||||||||||  ||||||||||||||||| |||||||||||||| 
Sbjct: 2116 aagcctggatttatgtcaaagaaaaatcggcaagaagcagtcaatttattttcatgctta 2175

                                                                        
Query: 96   gatgcttttctgaaggacgaacctctaggccctgatgacatgtggtactgtccttgctgc 155
            ||||||||||||||||| |||||||| ||||||||||||||||||||||||||  | |||
Sbjct: 2176 gatgcttttctgaaggatgaacctctgggccctgatgacatgtggtactgtccgagatgc 2235

                                                                        
Query: 156  aaggagcacagacaggctagtaagaaactcgacttgtggaggttgcctgagatattggtg 215
            | ||||||||  || || || || || || ||||| ||||||||||||||||||||||| 
Sbjct: 2236 acggagcacaagcaagccagcaaaaagcttgacttatggaggttgcctgagatattggta 2295

                                                                        
Query: 216  gtccacttaaagaggttttcatacagccgttatatgaaaaataagcttgatacctttgtg 275
            || |||||||| ||||| ||||||||||| | |||||| || ||||||||||||||||| 
Sbjct: 2296 gttcacttaaaaaggttctcatacagccggtttatgaagaacaagcttgatacctttgtc 2355

                                                                        
Query: 276  aactttccaatccatgatctcgatatgagcaaatacgcaaagcacacatcaggaggcgac 335
            |||||||||||||||||||| |||||||| | ||| ||||| |||   ||| |||| || 
Sbjct: 2356 aactttccaatccatgatcttgatatgagtagatatgcaaatcac---tcaagaggtgat 2412

                                                                        
Query: 336  cagccgcacatctatgaactctatgcggtgataaatcattatggtggtttgggaggtggt 395
            ||||| | ||| |||||||||||||| ||||| |||||||| || ||  |||| ||||||
Sbjct: 2413 cagccccccatttatgaactctatgcagtgatcaatcattacggcggaatgggtggtggt 2472

                                                                        
Query: 396  cactattctgcctatgcgaagttaatagaagaagatagctggtatcattttgatgatagt 455
            ||||| ||||| ||||| |||||| ||||||| || || |||||||||||||||||||| 
Sbjct: 2473 cactactctgcgtatgcaaagttagtagaagaggacagttggtatcattttgatgatagc 2532

                                                                        
Query: 456  catgtctcctctgtcaatgaagaggaaacaaggacatctgctgcttatctgctgttctat 515
            || || || |||||    |||||||| |  ||||||||  | |||||||| |||||||||
Sbjct: 2533 cacgtttcatctgttggcgaagaggacatcaggacatcctcagcttatctcctgttctat 2592

              
Query: 516  cg 517
            ||
Sbjct: 2593 cg 2594

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>dbj|AK111889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072M05, full
            insert sequence
          Length = 3441

 Score =  365 bits (184), Expect = 1e-97
 Identities = 408/482 (84%), Gaps = 3/482 (0%)
 Strand = Plus / Plus

                                                                        
Query: 36   aagccaggattcttgtcaaagaaaacacggcaagaagcagtcaacttattttcatgcttg 95
            ||||| |||||  ||||||||||||  ||||||||||||||||| |||||||||||||| 
Sbjct: 2396 aagcctggatttatgtcaaagaaaaatcggcaagaagcagtcaatttattttcatgctta 2455

                                                                        
Query: 96   gatgcttttctgaaggacgaacctctaggccctgatgacatgtggtactgtccttgctgc 155
            ||||||||||||||||| |||||||| ||||||||||||||||||||||||||  | |||
Sbjct: 2456 gatgcttttctgaaggatgaacctctgggccctgatgacatgtggtactgtccgagatgc 2515

                                                                        
Query: 156  aaggagcacagacaggctagtaagaaactcgacttgtggaggttgcctgagatattggtg 215
            | ||||||||  || || || || || || ||||| ||||||||||||||||||||||| 
Sbjct: 2516 acggagcacaagcaagccagcaaaaagcttgacttatggaggttgcctgagatattggta 2575

                                                                        
Query: 216  gtccacttaaagaggttttcatacagccgttatatgaaaaataagcttgatacctttgtg 275
            || |||||||| ||||| ||||||||||| | |||||| || ||||||||||||||||| 
Sbjct: 2576 gttcacttaaaaaggttctcatacagccggtttatgaagaacaagcttgatacctttgtc 2635

                                                                        
Query: 276  aactttccaatccatgatctcgatatgagcaaatacgcaaagcacacatcaggaggcgac 335
            |||||||||||||||||||| |||||||| | ||| ||||| |||   ||| |||| || 
Sbjct: 2636 aactttccaatccatgatcttgatatgagtagatatgcaaatcac---tcaagaggtgat 2692

                                                                        
Query: 336  cagccgcacatctatgaactctatgcggtgataaatcattatggtggtttgggaggtggt 395
            ||||| | ||| |||||||||||||| ||||| |||||||| || ||  |||| ||||||
Sbjct: 2693 cagccccccatttatgaactctatgcagtgatcaatcattacggcggaatgggtggtggt 2752

                                                                        
Query: 396  cactattctgcctatgcgaagttaatagaagaagatagctggtatcattttgatgatagt 455
            ||||| ||||| ||||| |||||| ||||||| || || |||||||||||||||||||| 
Sbjct: 2753 cactactctgcgtatgcaaagttagtagaagaggacagttggtatcattttgatgatagc 2812

                                                                        
Query: 456  catgtctcctctgtcaatgaagaggaaacaaggacatctgctgcttatctgctgttctat 515
            || || || |||||    |||||||| |  ||||||||  | |||||||| |||||||||
Sbjct: 2813 cacgtttcatctgttggcgaagaggacatcaggacatcctcagcttatctcctgttctat 2872

              
Query: 516  cg 517
            ||
Sbjct: 2873 cg 2874

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>gb|AC098696.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0050E08, complete sequence
          Length = 180499

 Score =  184 bits (93), Expect = 2e-43
 Identities = 194/227 (85%), Gaps = 3/227 (1%)
 Strand = Plus / Minus

                                                                         
Query: 186   gacttgtggaggttgcctgagatattggtggtccacttaaagaggttttcatacagccgt 245
             ||||| ||||||||||||||||||||||| || |||||||| ||||| ||||||||||| 
Sbjct: 93365 gacttatggaggttgcctgagatattggtagttcacttaaaaaggttctcatacagccgg 93306

                                                                         
Query: 246   tatatgaaaaataagcttgatacctttgtgaactttccaatccatgatctcgatatgagc 305
             | |||||| || ||||||||||||||||| |||||||||||||||||||| |||||||| 
Sbjct: 93305 tttatgaagaacaagcttgatacctttgtcaactttccaatccatgatcttgatatgagt 93246

                                                                         
Query: 306   aaatacgcaaagcacacatcaggaggcgaccagccgcacatctatgaactctatgcggtg 365
             | ||| ||||| |||   ||| |||| || ||||| | ||| |||||||||||||| |||
Sbjct: 93245 agatatgcaaatcac---tcaagaggtgatcagccccccatttatgaactctatgcagtg 93189

                                                            
Query: 366   ataaatcattatggtggtttgggaggtggtcactattctgcctatgc 412
             || |||||||| || ||  |||| ||||||||||| ||||| |||||
Sbjct: 93188 atcaatcattacggcggaatgggtggtggtcactactctgcgtatgc 93142



 Score =  139 bits (70), Expect = 1e-29
 Identities = 97/106 (91%)
 Strand = Plus / Minus

                                                                         
Query: 36    aagccaggattcttgtcaaagaaaacacggcaagaagcagtcaacttattttcatgcttg 95
             ||||| |||||  ||||||||||||  ||||||||||||||||| |||||||||||||| 
Sbjct: 93631 aagcctggatttatgtcaaagaaaaatcggcaagaagcagtcaatttattttcatgctta 93572

                                                           
Query: 96    gatgcttttctgaaggacgaacctctaggccctgatgacatgtggt 141
             ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 93571 gatgcttttctgaaggatgaacctctgggccctgatgacatgtggt 93526



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 84/103 (81%)
 Strand = Plus / Minus

                                                                         
Query: 415   agttaatagaagaagatagctggtatcattttgatgatagtcatgtctcctctgtcaatg 474
             ||||| ||||||| || || |||||||||||||||||||| || || || |||||    |
Sbjct: 93034 agttagtagaagaggacagttggtatcattttgatgatagccacgtttcatctgttggcg 92975

                                                        
Query: 475   aagaggaaacaaggacatctgctgcttatctgctgttctatcg 517
             ||||||| |  ||||||||  | |||||||| |||||||||||
Sbjct: 92974 aagaggacatcaggacatcctcagcttatctcctgttctatcg 92932

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score =  184 bits (93), Expect = 2e-43
 Identities = 194/227 (85%), Gaps = 3/227 (1%)
 Strand = Plus / Minus

                                                                           
Query: 186     gacttgtggaggttgcctgagatattggtggtccacttaaagaggttttcatacagccgt 245
               ||||| ||||||||||||||||||||||| || |||||||| ||||| ||||||||||| 
Sbjct: 3811569 gacttatggaggttgcctgagatattggtagttcacttaaaaaggttctcatacagccgg 3811510

                                                                           
Query: 246     tatatgaaaaataagcttgatacctttgtgaactttccaatccatgatctcgatatgagc 305
               | |||||| || ||||||||||||||||| |||||||||||||||||||| |||||||| 
Sbjct: 3811509 tttatgaagaacaagcttgatacctttgtcaactttccaatccatgatcttgatatgagt 3811450

                                                                           
Query: 306     aaatacgcaaagcacacatcaggaggcgaccagccgcacatctatgaactctatgcggtg 365
               | ||| ||||| |||   ||| |||| || ||||| | ||| |||||||||||||| |||
Sbjct: 3811449 agatatgcaaatcac---tcaagaggtgatcagccccccatttatgaactctatgcagtg 3811393

                                                              
Query: 366     ataaatcattatggtggtttgggaggtggtcactattctgcctatgc 412
               || |||||||| || ||  |||| ||||||||||| ||||| |||||
Sbjct: 3811392 atcaatcattacggcggaatgggtggtggtcactactctgcgtatgc 3811346



 Score =  139 bits (70), Expect = 1e-29
 Identities = 97/106 (91%)
 Strand = Plus / Minus

                                                                           
Query: 36      aagccaggattcttgtcaaagaaaacacggcaagaagcagtcaacttattttcatgcttg 95
               ||||| |||||  ||||||||||||  ||||||||||||||||| |||||||||||||| 
Sbjct: 3811835 aagcctggatttatgtcaaagaaaaatcggcaagaagcagtcaatttattttcatgctta 3811776

                                                             
Query: 96      gatgcttttctgaaggacgaacctctaggccctgatgacatgtggt 141
               ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 3811775 gatgcttttctgaaggatgaacctctgggccctgatgacatgtggt 3811730



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 84/103 (81%)
 Strand = Plus / Minus

                                                                           
Query: 415     agttaatagaagaagatagctggtatcattttgatgatagtcatgtctcctctgtcaatg 474
               ||||| ||||||| || || |||||||||||||||||||| || || || |||||    |
Sbjct: 3811238 agttagtagaagaggacagttggtatcattttgatgatagccacgtttcatctgttggcg 3811179

                                                          
Query: 475     aagaggaaacaaggacatctgctgcttatctgctgttctatcg 517
               ||||||| |  ||||||||  | |||||||| |||||||||||
Sbjct: 3811178 aagaggacatcaggacatcctcagcttatctcctgttctatcg 3811136

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  184 bits (93), Expect = 2e-43
 Identities = 194/227 (85%), Gaps = 3/227 (1%)
 Strand = Plus / Minus

                                                                           
Query: 186     gacttgtggaggttgcctgagatattggtggtccacttaaagaggttttcatacagccgt 245
               ||||| ||||||||||||||||||||||| || |||||||| ||||| ||||||||||| 
Sbjct: 3811490 gacttatggaggttgcctgagatattggtagttcacttaaaaaggttctcatacagccgg 3811431

                                                                           
Query: 246     tatatgaaaaataagcttgatacctttgtgaactttccaatccatgatctcgatatgagc 305
               | |||||| || ||||||||||||||||| |||||||||||||||||||| |||||||| 
Sbjct: 3811430 tttatgaagaacaagcttgatacctttgtcaactttccaatccatgatcttgatatgagt 3811371

                                                                           
Query: 306     aaatacgcaaagcacacatcaggaggcgaccagccgcacatctatgaactctatgcggtg 365
               | ||| ||||| |||   ||| |||| || ||||| | ||| |||||||||||||| |||
Sbjct: 3811370 agatatgcaaatcac---tcaagaggtgatcagccccccatttatgaactctatgcagtg 3811314

                                                              
Query: 366     ataaatcattatggtggtttgggaggtggtcactattctgcctatgc 412
               || |||||||| || ||  |||| ||||||||||| ||||| |||||
Sbjct: 3811313 atcaatcattacggcggaatgggtggtggtcactactctgcgtatgc 3811267



 Score =  139 bits (70), Expect = 1e-29
 Identities = 97/106 (91%)
 Strand = Plus / Minus

                                                                           
Query: 36      aagccaggattcttgtcaaagaaaacacggcaagaagcagtcaacttattttcatgcttg 95
               ||||| |||||  ||||||||||||  ||||||||||||||||| |||||||||||||| 
Sbjct: 3811756 aagcctggatttatgtcaaagaaaaatcggcaagaagcagtcaatttattttcatgctta 3811697

                                                             
Query: 96      gatgcttttctgaaggacgaacctctaggccctgatgacatgtggt 141
               ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 3811696 gatgcttttctgaaggatgaacctctgggccctgatgacatgtggt 3811651



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 84/103 (81%)
 Strand = Plus / Minus

                                                                           
Query: 415     agttaatagaagaagatagctggtatcattttgatgatagtcatgtctcctctgtcaatg 474
               ||||| ||||||| || || |||||||||||||||||||| || || || |||||    |
Sbjct: 3811159 agttagtagaagaggacagttggtatcattttgatgatagccacgtttcatctgttggcg 3811100

                                                          
Query: 475     aagaggaaacaaggacatctgctgcttatctgctgttctatcg 517
               ||||||| |  ||||||||  | |||||||| |||||||||||
Sbjct: 3811099 aagaggacatcaggacatcctcagcttatctcctgttctatcg 3811057

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>ref|NM_103019.2| Arabidopsis thaliana cysteine-type endopeptidase/ ubiquitin
            thiolesterase AT1G32850 mRNA, complete cds
          Length = 2679

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 96/119 (80%)
 Strand = Plus / Plus

                                                                        
Query: 84   ttttcatgcttggatgcttttctgaaggacgaacctctaggccctgatgacatgtggtac 143
            |||||||||||||| || |||||    || || |||||||| || |||||||||||||| 
Sbjct: 2206 ttttcatgcttggaagcctttctagcagaagagcctctaggaccagatgacatgtggtat 2265

                                                                       
Query: 144  tgtccttgctgcaaggagcacagacaggctagtaagaaactcgacttgtggaggttgcc 202
            |||||| | ||||| || || ||||| || |  ||||| || |||||||||| ||||||
Sbjct: 2266 tgtcctggttgcaaagaacatagacaagcgaacaagaagctagacttgtggaagttgcc 2324



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 369  aatcattatggtggtttgggaggtggtcacta 400
            ||||||||||||||  | ||||||||||||||
Sbjct: 2485 aatcattatggtggccttggaggtggtcacta 2516

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>gb|AC006424.5|AC006424 Arabidopsis thaliana chromosome I BAC F9L11 genomic sequence, complete
             sequence
          Length = 122836

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 96/119 (80%)
 Strand = Plus / Plus

                                                                         
Query: 84    ttttcatgcttggatgcttttctgaaggacgaacctctaggccctgatgacatgtggtac 143
             |||||||||||||| || |||||    || || |||||||| || |||||||||||||| 
Sbjct: 25858 ttttcatgcttggaagcctttctagcagaagagcctctaggaccagatgacatgtggtat 25917

                                                                        
Query: 144   tgtccttgctgcaaggagcacagacaggctagtaagaaactcgacttgtggaggttgcc 202
             |||||| | ||||| || || ||||| || |  ||||| || |||||||||| ||||||
Sbjct: 25918 tgtcctggttgcaaagaacatagacaagcgaacaagaagctagacttgtggaagttgcc 25976



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 369   aatcattatggtggtttgggaggtggtcacta 400
             ||||||||||||||  | ||||||||||||||
Sbjct: 26137 aatcattatggtggccttggaggtggtcacta 26168

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>ref|XM_713669.1| Candida albicans SC5314 putative ubiquitin-specific protease
            (CaO19_13639), mRNA
          Length = 4065

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 369  aatcattatggtggtttgggaggtggtcactattctgcct 408
            |||||||||||||| || ||||||||||| ||| ||||||
Sbjct: 3328 aatcattatggtgggttaggaggtggtcattatactgcct 3367

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>ref|XM_387088.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG06912.1)
            partial mRNA
          Length = 4857

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 132  gacatgtggtactgtccttgctgcaaggagca 163
            |||||||||||||||||  |||||||||||||
Sbjct: 3811 gacatgtggtactgtccccgctgcaaggagca 3842

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>ref|NM_180721.1| Arabidopsis thaliana cysteine-type endopeptidase/ ubiquitin
            thiolesterase/ ubiquitin-specific protease AT5G22030
            transcript variant AT5G22030.1 mRNA, complete cds
          Length = 2253

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 117  cctctaggccctgatgacatgtggtactgtcct 149
            ||||| || ||||||||||||||||| ||||||
Sbjct: 1459 cctcttggtcctgatgacatgtggtattgtcct 1491

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>ref|NM_122126.2| Arabidopsis thaliana cysteine-type endopeptidase/ ubiquitin
            thiolesterase/ ubiquitin-specific protease AT5G22030
            transcript variant AT5G22030.2 mRNA, complete cds
          Length = 2321

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 117  cctctaggccctgatgacatgtggtactgtcct 149
            ||||| || ||||||||||||||||| ||||||
Sbjct: 1459 cctcttggtcctgatgacatgtggtattgtcct 1491

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>ref|XM_713754.1| Candida albicans SC5314 putative ubiquitin-specific protease
            (CaO19_6260), mRNA
          Length = 4119

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 369  aatcattatggtggtttgggaggtggtca 397
            |||||||||||||| || |||||||||||
Sbjct: 3328 aatcattatggtgggttaggaggtggtca 3356

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>gb|BT013791.1| Lycopersicon esculentum clone 132711R, mRNA sequence
          Length = 3486

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                        
Query: 225  aagaggttttcatacagccgttatatgaaaaataagcttgatacctttgtgaactttcca 284
            |||||||||||||||||||| |  |||||  ||||||| || || ||||| || ||||| 
Sbjct: 2742 aagaggttttcatacagccggtccatgaagcataagctggaaacttttgtaaattttcct 2801

                     
Query: 285  atccatgat 293
            || ||||||
Sbjct: 2802 attcatgat 2810

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>emb|BX470077.5| Zebrafish DNA sequence from clone CH211-136P17 in linkage group 5,
             complete sequence
          Length = 165851

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 366   ataaatcattatggtggtttg 386
             |||||||||||||||||||||
Sbjct: 99340 ataaatcattatggtggtttg 99320

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>gb|AF302662.1|AF302662 Arabidopsis thaliana ubiquitin-specific protease 8 (UBP8) mRNA,
            partial cds
          Length = 1797

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 117  cctctaggccctgatgacatgtggtactgtcct 149
            ||||| || ||||||||||||||||| ||||||
Sbjct: 1003 cctcttggtcctgatgacatgtggtattgtcct 1035

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>emb|BX942839.9| Zebrafish DNA sequence from clone CH211-93F2 in linkage group 20,
              complete sequence
          Length = 173570

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 47     cttgtcaaagaaaacacggcaagaa 71
              |||||||||||||||||||| ||||
Sbjct: 112472 cttgtcaaagaaaacacggctagaa 112448

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>ref|NM_117125.3| Arabidopsis thaliana cysteine-type endopeptidase/ ubiquitin
            thiolesterase AT4G10570 mRNA, complete cds
          Length = 3289

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                    
Query: 114  gaacctctaggccctgatgacatgtggtactgtccttgctgcaaggagcacagaca 169
            |||||||| || || |||||||||||||  |||||  ||||||| || ||||||||
Sbjct: 2396 gaacctctgggaccagatgacatgtggttttgtccgagctgcaaagaacacagaca 2451

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>ref|NM_117127.1| Arabidopsis thaliana cysteine-type endopeptidase/ ubiquitin
            thiolesterase AT4G10590 transcript variant AT4G10590.1
            mRNA, complete cds
          Length = 3091

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                    
Query: 114  gaacctctaggccctgatgacatgtggtactgtccttgctgcaaggagcacagaca 169
            |||||||| || || |||||||||||||  |||||  ||||||| || ||||||||
Sbjct: 2454 gaacctctgggaccagatgacatgtggttttgtccgagctgcaaagaacacagaca 2509

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>ref|NM_179025.1| Arabidopsis thaliana cysteine-type endopeptidase/ ubiquitin
            thiolesterase AT4G10590 transcript variant AT4G10590.2
            mRNA, complete cds
          Length = 3287

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                    
Query: 114  gaacctctaggccctgatgacatgtggtactgtccttgctgcaaggagcacagaca 169
            |||||||| || || |||||||||||||  |||||  ||||||| || ||||||||
Sbjct: 2454 gaacctctgggaccagatgacatgtggttttgtccgagctgcaaagaacacagaca 2509

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>ref|NM_115445.2| Arabidopsis thaliana anthranilate synthase AT3G55870 mRNA, complete
           cds
          Length = 1963

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  gatgatcttcctgatgtttt 35
           ||||||||||||||||||||
Sbjct: 566 gatgatcttcctgatgtttt 585

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>gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0027P09,
              complete sequence
          Length = 171861

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                      
Query: 86     ttcatgcttggatgcttttctgaaggacgaacctctaggccctgatgacatgtggt 141
              ||||||||||||||||||  |||  || |||||||| |  ||||| ||||||||||
Sbjct: 149185 ttcatgcttggatgctttcttgagagaagaacctcttgttcctgaagacatgtggt 149240

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>emb|Z83127.1|CET23F6 Caenorhabditis elegans Cosmid T23F6, complete sequence
          Length = 21513

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 546  tctgaagttgttccagatga 565
            ||||||||||||||||||||
Sbjct: 7032 tctgaagttgttccagatga 7051

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>gb|AC073322.8| Homo sapiens BAC clone RP11-319G5 from 7, complete sequence
          Length = 72461

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 53   aaagaaaacacggcaagaagcagt 76
            |||||||||||||| |||||||||
Sbjct: 8520 aaagaaaacacggccagaagcagt 8497

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>gb|BT010363.1| Arabidopsis thaliana At4g10590 mRNA, complete cds
          Length = 2733

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                    
Query: 114  gaacctctaggccctgatgacatgtggtactgtccttgctgcaaggagcacagaca 169
            |||||||| || || |||||||||||||  |||||  ||||||| || ||||||||
Sbjct: 2278 gaacctctgggaccagatgacatgtggttttgtccgagctgcaaagaacacagaca 2333

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>emb|AL445217.3| Human DNA sequence from clone RP11-335G18 on chromosome 13 Contains the
             5' end of the EPSTI1 gene for epithelial stromal
             interaction 1 (breast) and the gene for a DNAJ
             domain-containing protein (MCJ), complete sequence
          Length = 161699

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   aggccctgatgacatgtggt 141
             ||||||||||||||||||||
Sbjct: 23071 aggccctgatgacatgtggt 23090

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>gb|BT000615.1| Arabidopsis thaliana anthranilate synthase alpha-1 chain-like
           protein  (At3g55870/F27K19_50) mRNA, complete cds
          Length = 1479

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  gatgatcttcctgatgtttt 35
           ||||||||||||||||||||
Sbjct: 220 gatgatcttcctgatgtttt 239

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>emb|CR628339.1| Legionella pneumophila str. Lens plasmid pLPL, complete sequence
          Length = 59832

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 439   atcattttgatgatagtcat 458
             ||||||||||||||||||||
Sbjct: 28223 atcattttgatgatagtcat 28242

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>emb|AL163832.1|ATF27K19 Arabidopsis thaliana DNA chromosome 3, BAC clone F27K19
          Length = 95111

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    gatgatcttcctgatgtttt 35
             ||||||||||||||||||||
Sbjct: 16547 gatgatcttcctgatgtttt 16566

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>gb|AC020558.4| Homo sapiens BAC clone RP11-524F11 from 17, complete sequence
          Length = 183334

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 493   ctgctgcttatctgctgttc 512
             ||||||||||||||||||||
Sbjct: 57525 ctgctgcttatctgctgttc 57506

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>gb|AF424611.1|AF424611 Arabidopsis thaliana AT3g55870/F27K19_50 mRNA, complete cds
          Length = 1964

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  gatgatcttcctgatgtttt 35
           ||||||||||||||||||||
Sbjct: 566 gatgatcttcctgatgtttt 585

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>gb|AY054463.1| Arabidopsis thaliana putative protein (At4g10590; T4F9.50) mRNA,
            complete cds
          Length = 3092

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                    
Query: 114  gaacctctaggccctgatgacatgtggtactgtccttgctgcaaggagcacagaca 169
            |||||||| || || |||||||||||||  |||||  ||||||| || ||||||||
Sbjct: 2455 gaacctctgggaccagatgacatgtggttttgtccgagctgcaaagaacacagaca 2510

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>ref|NM_070031.2| Caenorhabditis elegans RBD (RNA binding domain) protein family member
            (rbd-1) (rbd-1) mRNA, complete cds
          Length = 2783

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 546  tctgaagttgttccagatga 565
            ||||||||||||||||||||
Sbjct: 1141 tctgaagttgttccagatga 1160

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                        
Query: 86       ttcatgcttggatgcttttctgaaggacgaacctctaggccctgatgacatgtggt 141
                ||||||||||||||||||  |||  || |||||||| |  ||||| ||||||||||
Sbjct: 15739504 ttcatgcttggatgctttcttgagagaagaacctcttgttcctgaagacatgtggt 15739559

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>gb|AC096719.3| Homo sapiens BAC clone RP11-14M23 from 4, complete sequence
          Length = 158398

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   cttaaagaggttttcataca 240
             ||||||||||||||||||||
Sbjct: 29849 cttaaagaggttttcataca 29830

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>gb|AC093650.5| Homo sapiens BAC clone RP11-364I15 from 2, complete sequence
          Length = 83055

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   gtggtactgtccttgctgca 156
             ||||||||||||||||||||
Sbjct: 52214 gtggtactgtccttgctgca 52233

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>gb|AC096560.1| Homo sapiens BAC clone RP11-241F6 from 2, complete sequence
          Length = 57407

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   gttatatgaaaaataagctt 263
             ||||||||||||||||||||
Sbjct: 49852 gttatatgaaaaataagctt 49871

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>gb|BT004132.1| Arabidopsis thaliana clone RAFL15-10-B07 (R20706) At4g10570 mRNA,
            complete sequence
          Length = 3318

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                    
Query: 114  gaacctctaggccctgatgacatgtggtactgtccttgctgcaaggagcacagaca 169
            |||||||| || || |||||||||||||  |||||  ||||||| || ||||||||
Sbjct: 2396 gaacctctgggaccagatgacatgtggttttgtccgagctgcaaagaacacagaca 2451

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>emb|CT573086.9| Mouse DNA sequence from clone RP23-163K5 on chromosome 16, complete
              sequence
          Length = 208384

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 475    aagaggaaacaaggacatctgctg 498
              |||||| |||||||||||||||||
Sbjct: 178686 aagaggcaacaaggacatctgctg 178663

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                        
Query: 86       ttcatgcttggatgcttttctgaaggacgaacctctaggccctgatgacatgtggt 141
                ||||||||||||||||||  |||  || |||||||| |  ||||| ||||||||||
Sbjct: 15826881 ttcatgcttggatgctttcttgagagaagaacctcttgttcctgaagacatgtggt 15826936

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>dbj|AP003155.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-567F3, complete
             sequences
          Length = 157385

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 475   aagaggaaacaaggacatctgctg 498
             |||||| |||||||||||||||||
Sbjct: 72981 aagaggcaacaaggacatctgctg 73004


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,856,519
Number of Sequences: 3902068
Number of extensions: 5856519
Number of successful extensions: 108102
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107897
Number of HSP's gapped (non-prelim): 190
length of query: 587
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 564
effective length of database: 17,143,297,704
effective search space: 9668819905056
effective search space used: 9668819905056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result