ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags32f14 |
|---|---|
| Clone Library Name | barley_pub |
>GCR_SHEEP (P35547) Glucocorticoid receptor (GR) (Fragment)| Length = 314 Score = 30.8 bits (68), Expect = 2.6 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 2/33 (6%) Frame = -1 Query: 320 RSWFSLASSS--LEEDETSLPLSSSAGTGPPPR 228 RS FS SS + D +S P SSSA TGPPP+ Sbjct: 248 RSVFSNGYSSPGMRPDVSSPPSSSSAATGPPPK 280
>GCR_RAT (P06536) Glucocorticoid receptor (GR)| Length = 795 Score = 30.8 bits (68), Expect = 2.6 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 2/33 (6%) Frame = -1 Query: 320 RSWFSLASSS--LEEDETSLPLSSSAGTGPPPR 228 RS FS SS + D +S P SSSA TGPPP+ Sbjct: 406 RSVFSNGYSSPGMRPDVSSPPSSSSAATGPPPK 438
>GCR_PIG (Q9N1U3) Glucocorticoid receptor (GR) (Fragment)| Length = 711 Score = 30.8 bits (68), Expect = 2.6 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 2/33 (6%) Frame = -1 Query: 320 RSWFSLASSS--LEEDETSLPLSSSAGTGPPPR 228 RS FS SS + D +S P SSSA TGPPP+ Sbjct: 351 RSVFSNGYSSPGMRPDVSSPPSSSSAATGPPPK 383
>YKR5_YEAST (P34240) Hypothetical 55.4 kDa protein in STE3-GIN10 intergenic| region Length = 503 Score = 29.6 bits (65), Expect = 5.7 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -3 Query: 132 GIFVAAEHEHDGGDGDNEMFQRRSSATT 49 GI + H H G+GD EM Q SS TT Sbjct: 457 GIGFSDGHHHHQGEGDEEMKQSHSSGTT 484
>HOSC_THET2 (O87198) Homocitrate synthase (EC 2.3.3.14)| Length = 376 Score = 29.6 bits (65), Expect = 5.7 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Frame = -3 Query: 342 DVIGVATTKLVLAGILVARGRRDVASPLLV---GGYRAPAALASAHPVLDGDADHVDDAL 172 D +GVAT + V A LV RR V + + G A+A+A+ ++ A HVD + Sbjct: 165 DTVGVATPRQVYA--LVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDTTI 222 Query: 171 QGV 163 G+ Sbjct: 223 LGI 225
>RPOB2_MYCSM (P60281) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1169 Score = 29.6 bits (65), Expect = 5.7 Identities = 28/78 (35%), Positives = 33/78 (42%) Frame = -3 Query: 294 VARGRRDVASPLLVGGYRAPAALASAHPVLDGDADHVDDALQGVPCDPGPERHGGIFVAA 115 VA G D AS L Y APA A PV DG + L G+ P R G + V A Sbjct: 939 VAAGVPDWASKLPEELYSAPADSTVATPVFDGAQ---EGELAGLLGSTLPNRDGEVMVDA 995 Query: 114 EHEHDGGDGDNEMFQRRS 61 DG + +F RS Sbjct: 996 -------DGKSTLFDGRS 1006
>Y05G_BPT4 (P39242) Hypothetical 38.9 kDa protein in nrdC-mobD intergenic| region Length = 336 Score = 29.3 bits (64), Expect = 7.5 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 7/56 (12%) Frame = -3 Query: 540 NTNNASQSNTENNKEHVKRQKDY-------AKPV*LRCITDNLFTPGRYPVKSNYP 394 NTNN S NT++N +H Y +PV L D L TP VKS+ P Sbjct: 48 NTNNTSSKNTKDNIDHELYSLKYFFKLAADGEPVAL----DMLHTPPELVVKSDLP 99
>GCR_MOUSE (P06537) Glucocorticoid receptor (GR)| Length = 783 Score = 29.3 bits (64), Expect = 7.5 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = -1 Query: 320 RSWFSLASSS--LEEDETSLPLSSSAGTGPPPR 228 RS FS SS + D +S P SSS TGPPP+ Sbjct: 394 RSVFSNGYSSPGMRPDVSSPPSSSSTATGPPPK 426
>GCR_CAVPO (P49115) Glucocorticoid receptor (GR)| Length = 771 Score = 29.3 bits (64), Expect = 7.5 Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = -1 Query: 320 RSWFSLASSS--LEEDETSLPLSSSAGTGPPPR 228 RS FS SS L D +S P SSS TGPPP+ Sbjct: 382 RSVFSNGYSSPGLRPDVSSPPSSSSTTTGPPPK 414
>E75_METEN (O77245) Nuclear hormone receptor E75| Length = 606 Score = 29.3 bits (64), Expect = 7.5 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Frame = -1 Query: 359 RCFAKLT*SVSRPR--SWFSLASSSLEEDETSLPLSSSAGTGPPP--RWLRRIRYSTATQ 192 RC A+L S R SW +S ++ ++ S PPP W RR +T+ Sbjct: 528 RCCARLQRRPSSTRICSWRKPTTSPIKSSVRNVGKRSLTPHSPPPPRSWSRRCLSLHSTR 587 Query: 191 TMWTMHCRAYP 159 +W H +P Sbjct: 588 ALWLRHTPPWP 598
>ADH2_CANAL (O94038) Alcohol dehydrogenase 2 (EC 1.1.1.1)| Length = 348 Score = 29.3 bits (64), Expect = 7.5 Identities = 20/85 (23%), Positives = 36/85 (42%) Frame = +2 Query: 215 CAEASAAGARYPPTRRGEATSRLPLATRMPARTNFVVATPITSVWQSIWSLRIQCSPSYG 394 CAEA +G + + + AT+ A R+PA T+ PI +++ G Sbjct: 112 CAEADLSGYTHDGSFQQYATADAVQAARIPAGTDLANVAPILCAGVTVYKALKTAELEAG 171 Query: 395 G*LDFTGYLPGVKRLSVMHLNYTGF 469 + +G G+ L+V + G+ Sbjct: 172 QWVAISGAAGGLGSLAVQYAKAMGY 196
>FABF_SHIFL (P0AAI8) 3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase II) (Beta-ketoacyl-ACP synthase II) (KAS II) Length = 412 Score = 28.9 bits (63), Expect = 9.7 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = -3 Query: 306 AGILVARGRRDVASPLLVGGYRAPAALASAHPVLDGDADHVDDALQGVPCDPGPERHGGI 127 A ++VA G ++PL VGG+ A AL++ + + D G G G+ Sbjct: 182 ADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDG----AGM 237 Query: 126 FVAAEHEH 103 V E+EH Sbjct: 238 LVLEEYEH 245
>FABF_ECOLI (P0AAI5) 3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase II) (Beta-ketoacyl-ACP synthase II) (KAS II) Length = 412 Score = 28.9 bits (63), Expect = 9.7 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = -3 Query: 306 AGILVARGRRDVASPLLVGGYRAPAALASAHPVLDGDADHVDDALQGVPCDPGPERHGGI 127 A ++VA G ++PL VGG+ A AL++ + + D G G G+ Sbjct: 182 ADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDG----AGM 237 Query: 126 FVAAEHEH 103 V E+EH Sbjct: 238 LVLEEYEH 245
>FABF_ECOL6 (P0AAI6) 3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase II) (Beta-ketoacyl-ACP synthase II) (KAS II) Length = 412 Score = 28.9 bits (63), Expect = 9.7 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = -3 Query: 306 AGILVARGRRDVASPLLVGGYRAPAALASAHPVLDGDADHVDDALQGVPCDPGPERHGGI 127 A ++VA G ++PL VGG+ A AL++ + + D G G G+ Sbjct: 182 ADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDG----AGM 237 Query: 126 FVAAEHEH 103 V E+EH Sbjct: 238 LVLEEYEH 245
>FABF_ECO57 (P0AAI7) 3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase II) (Beta-ketoacyl-ACP synthase II) (KAS II) Length = 412 Score = 28.9 bits (63), Expect = 9.7 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = -3 Query: 306 AGILVARGRRDVASPLLVGGYRAPAALASAHPVLDGDADHVDDALQGVPCDPGPERHGGI 127 A ++VA G ++PL VGG+ A AL++ + + D G G G+ Sbjct: 182 ADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDG----AGM 237 Query: 126 FVAAEHEH 103 V E+EH Sbjct: 238 LVLEEYEH 245
>MA122_DROME (P53625) Mannosyl-oligosaccharide alpha-1,2-mannosidase isoform 2| (EC 3.2.1.113) (Man(9)-alpha-mannosidase) Length = 643 Score = 28.9 bits (63), Expect = 9.7 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = -1 Query: 332 VSRPRSWFSLASSSLEEDETSLPLSSSAGTGPPPRWLRRIRYSTAT 195 +S S FS+ SS+ E TS PLSS PP ++Y+ ++ Sbjct: 124 ISPSTSTFSMRSSAGELTSTSAPLSSIVSVTAPPMPFGGVKYNQSS 169 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,438,583 Number of Sequences: 219361 Number of extensions: 1619245 Number of successful extensions: 5330 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5066 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5317 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
