ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags32f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1V040_FOWPV (Q9J5G3) Putative serpin-like protein FPV040 33 0.70
2ELM1_YEAST (P32801) Serine/threonine-protein kinase ELM1 (EC 2.7... 32 2.0
3BPH1_YEAST (P25356) Beige protein homolog 1 31 3.5
4DNAE2_BRAJA (Q89QU8) Error-prone DNA polymerase (EC 2.7.7.7) 31 3.5
5NUDH_RHOPA (P61786) Probable (di)nucleoside polyphosphate hydrol... 30 7.7
6HEM6_DROME (Q9V3D2) Coproporphyrinogen III oxidase (EC 1.3.3.3) ... 30 7.7

>V040_FOWPV (Q9J5G3) Putative serpin-like protein FPV040|
          Length = 337

 Score = 33.1 bits (74), Expect = 0.70
 Identities = 27/82 (32%), Positives = 36/82 (43%)
 Frame = -2

Query: 385 LGLDRICKRAPAHDVRYDVIEG*YNDCIFSFGYRDVYVLINIQKTVLNTEVEKATIPIWR 206
           L + +I     + D+ Y    G  N CI     R   +L N  KT    E E  +I    
Sbjct: 65  LYMKKINDNMNSSDIDYFCKLGLNNVCI---NQRTKNILYNCYKTCTVDETEGCSIKFKN 121

Query: 205 WLNFENLAHFPFVAPSLERIMK 140
            L FE L + PF AP+ E+I K
Sbjct: 122 VLEFEALWNRPFTAPTEEQIRK 143



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>ELM1_YEAST (P32801) Serine/threonine-protein kinase ELM1 (EC 2.7.11.1)|
          Length = 640

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +2

Query: 74  FSLSVWEMGTLLTLGLTDSCEFFHD-PFKGRSDEGKVRKVLKVEPTPDGNGRFFNLSVQN 250
           F L +W      +LG+T  C  +++ PF G ++     K+++V  +   NG   N  V  
Sbjct: 333 FKLDIW------SLGVTLYCLLYNELPFFGENEFETYHKIIEVSLSSKINGNTLNDLVIK 386

Query: 251 RLLNVDENIYIPI 289
           RLL  D  + I I
Sbjct: 387 RLLEKDVTLRISI 399



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>BPH1_YEAST (P25356) Beige protein homolog 1|
          Length = 2167

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +2

Query: 230 FNLSVQNRLLNVDENIYIPITKGEYAVIVSTFNYII 337
           FN    NR++ ++ +IY+ I +G++   +S  NYII
Sbjct: 248 FNSVTSNRIMTIERHIYLEIKEGQFC--ISNDNYII 281



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>DNAE2_BRAJA (Q89QU8) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1151

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +1

Query: 277 IHPYNQRRICSHCINLQLHHTAHHGLEHVYK-FYQARGVAAIQ*AAVLARIGVAKVKNDD 453
           +HPY +RR     +N       H   + +YK  ++ +GV   Q  A+   I  AK  +++
Sbjct: 627 VHPYLRRRNGQEKVNYPSPSPEHGPADELYKVLHKTKGVPLFQEQAMRIAIEAAKFTSEE 686

Query: 454 --GSRREMA 474
             G RR MA
Sbjct: 687 ANGLRRSMA 695



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>NUDH_RHOPA (P61786) Probable (di)nucleoside polyphosphate hydrolase (EC|
           3.6.1.-)
          Length = 168

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 229 KATIPIWRWLNFENLAHF--PFVAPSLERIMKELARI 125
           KA    WRW    NL     PF  P  ER++KE +++
Sbjct: 128 KAEFTSWRWEPMHNLPELIVPFKRPVYERVVKEFSQL 164



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>HEM6_DROME (Q9V3D2) Coproporphyrinogen III oxidase (EC 1.3.3.3)|
           (Coproporphyrinogenase) (Coprogen oxidase) (COX)
          Length = 390

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +2

Query: 104 LLTLGLTDSCEFFHDPFKGRSDEGKVRKVLK 196
           L++L L    E+ H+P K +S+EGK+ KVLK
Sbjct: 355 LMSLPLHARWEYMHEP-KSQSEEGKLMKVLK 384


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,878,917
Number of Sequences: 219361
Number of extensions: 2048632
Number of successful extensions: 6309
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6309
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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