ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags31p04 |
|---|---|
| Clone Library Name | barley_pub |
>VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 275 Score = 212 bits (540), Expect = 2e-55 Identities = 109/114 (95%), Positives = 110/114 (96%) Frame = +3 Query: 24 VKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANP 203 VKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANP Sbjct: 68 VKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANP 127 Query: 204 VVNLSAAFGTSALAVGGDVSLDTSTKNFTKYNAAFSYTNQDLIASLNLNNKGDS 365 VVNLS AFGTSALAVG DVSLDT+TKNF KYNAA SYTNQDLIASLNLNNKGDS Sbjct: 128 VVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDS 181
>VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 273 Score = 175 bits (443), Expect = 3e-44 Identities = 88/114 (77%), Positives = 100/114 (87%) Frame = +3 Query: 24 VKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANP 203 VKANS SNV+TT+T D+L PGLK+ILSFAVPDQ+SGK ELQY HDYAG++ASIGLTA+P Sbjct: 67 VKANSDSNVVTTVTVDELT-PGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASP 125 Query: 204 VVNLSAAFGTSALAVGGDVSLDTSTKNFTKYNAAFSYTNQDLIASLNLNNKGDS 365 VVNLS+ FGT ALAVG DVSLDT+T N TKYNA S++N DLIASLNLNNKGDS Sbjct: 126 VVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDS 179
>VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 277 Score = 159 bits (403), Expect = 1e-39 Identities = 75/114 (65%), Positives = 96/114 (84%) Frame = +3 Query: 24 VKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANP 203 VKANS S+++TTIT D+ PGLK+I++ VPDQ+SGK+E QYLH+YAG+NAS+GL +NP Sbjct: 69 VKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNP 128 Query: 204 VVNLSAAFGTSALAVGGDVSLDTSTKNFTKYNAAFSYTNQDLIASLNLNNKGDS 365 +VNLS AFG+ AL+VG DVS DT+T +FTKYNAA S T+ DLIASL+LNN GD+ Sbjct: 129 MVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDT 182
>VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 34) Length = 275 Score = 155 bits (392), Expect = 2e-38 Identities = 76/114 (66%), Positives = 93/114 (81%) Frame = +3 Query: 24 VKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANP 203 +K ++ SN+ TTIT D+ AAPGLKTILSF VPDQ+SGK+E+QYLHDYAGI S+GLTANP Sbjct: 68 IKVDTNSNLFTTITVDE-AAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANP 126 Query: 204 VVNLSAAFGTSALAVGGDVSLDTSTKNFTKYNAAFSYTNQDLIASLNLNNKGDS 365 +VN S GT+ +A+G DVS DT T +FTK NA S+TN DL+ASLNLNNKGD+ Sbjct: 127 IVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDN 180
>VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 36) Length = 275 Score = 147 bits (372), Expect = 5e-36 Identities = 75/114 (65%), Positives = 91/114 (79%) Frame = +3 Query: 24 VKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANP 203 VK ++ SNV TTIT D+ APGLKTI SF VPDQKSGKVELQYLH+YAGIN SIGLTA+P Sbjct: 68 VKVDTNSNVYTTITVDE-PAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASP 126 Query: 204 VVNLSAAFGTSALAVGGDVSLDTSTKNFTKYNAAFSYTNQDLIASLNLNNKGDS 365 +VN S G + +A+G D+S DT+T NFTK NA S+++ DLIASL LN+KGD+ Sbjct: 127 LVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDT 180
>VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin 1| (Voltage-dependent anion-selective channel protein 1) (VDAC 1) Length = 275 Score = 135 bits (340), Expect = 2e-32 Identities = 68/113 (60%), Positives = 84/113 (74%) Frame = +3 Query: 24 VKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANP 203 +K + S + T T D+ AAPGL++I SF VPDQ SGKVELQYLH+YAGI+ S+GLT NP Sbjct: 68 LKVCTDSTFLITATVDE-AAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNP 126 Query: 204 VVNLSAAFGTSALAVGGDVSLDTSTKNFTKYNAAFSYTNQDLIASLNLNNKGD 362 VN S G++ LAVG DVS DT + NFTK NA S+T +DLIASL +N+KGD Sbjct: 127 TVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGD 179
>VDAC_PEA (P42054) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 275 Score = 134 bits (337), Expect = 5e-32 Identities = 66/113 (58%), Positives = 84/113 (74%) Frame = +3 Query: 24 VKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANP 203 +K ++ SN+ TTIT ++ APG+K ILSF VP+Q SGKVELQYLH+YAGI++S+GL ANP Sbjct: 68 IKVDTNSNLFTTITVNE-PAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANP 126 Query: 204 VVNLSAAFGTSALAVGGDVSLDTSTKNFTKYNAAFSYTNQDLIASLNLNNKGD 362 +VN S+ GT+ALA G D+S DT TK NAA ++ DLI SL LN KGD Sbjct: 127 IVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGD 179
>VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin 2| (Voltage-dependent anion-selective channel protein 2) (VDAC 2) Length = 273 Score = 122 bits (305), Expect = 3e-28 Identities = 58/113 (51%), Positives = 82/113 (72%) Frame = +3 Query: 24 VKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANP 203 VK ++ S+++TT+T D+ APGLK I+ +PD KSGK E+QY HDYAGI+ S+G TA P Sbjct: 68 VKVSTDSSLLTTLTFDE-PAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATP 126 Query: 204 VVNLSAAFGTSALAVGGDVSLDTSTKNFTKYNAAFSYTNQDLIASLNLNNKGD 362 +VN S GT+ L++G DV+ +T + NF +NA F++T DL ASL LN+KG+ Sbjct: 127 IVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGE 179
>VDAC_CAEEL (Q21752) Probable voltage-dependent anion-selective channel| Length = 283 Score = 47.0 bits (110), Expect = 1e-05 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Frame = +3 Query: 27 KANSASNVITTITADDLAAPGLKTIL-SFAVPD--QKSGKVELQYLHDYAGINASIGLTA 197 K N+ + + T I ++ GLK L S P ++SGKV+L + A + A +G+T+ Sbjct: 75 KWNTENQLGTVIEVNEQFGRGLKVTLDSLYAPHAGKRSGKVKLDWALPTARVTADVGVTS 134 Query: 198 NPVVNLSAAFGTSALAVGGDVSLDTSTKNFTKYNAAFSY-TNQDLIASLNLNN 353 PV+N + F +G + D+S+ + AF + T Q + S +N+ Sbjct: 135 APVINAAGVFSRDGWLIGAAATFDSSSNKLAATSLAFGHSTPQYTLHSFVINS 187
>POL2_TRSV (Q6UR06) RNA2 polyprotein (P2) [Contains: P2A protein (2A); Movement| protein (2B-MP); Coat protein (2C-CP)] Length = 1101 Score = 31.6 bits (70), Expect = 0.50 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 18/78 (23%) Frame = +3 Query: 117 PDQKSGKVELQ---YLHDYAGINASIGLTANPVVNLSAAFG---------------TSAL 242 PD +G V Y+HD+A +A++ L +NP+ L AA G A Sbjct: 953 PDANTGVVNFDIPGYIHDFASKDATVTLASNPLSWLVAATGWHYGEVDLCISWPRSKQAQ 1012 Query: 243 AVGGDVSLDTSTKNFTKY 296 A G VS+ T+ +++ Y Sbjct: 1013 AQEGSVSITTNYRDWGAY 1030
>LEU2_MYCSM (Q938C9) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 422 Score = 31.6 bits (70), Expect = 0.50 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Frame = +3 Query: 81 APGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSAAFGTSALAVG-GD 257 APG++ I++ A + L YL D A A I + A FG VG G+ Sbjct: 315 APGVRLIVTPASQQVYRDAMRLGYLQDIADAGAVITNST-----CGACFGYHMGVVGPGE 369 Query: 258 VSLDTSTKNFT 290 V L +ST+NFT Sbjct: 370 VCLTSSTRNFT 380
>COAT_TRSV (Q88894) Coat protein precursor (Capsid protein)| Length = 515 Score = 31.6 bits (70), Expect = 0.50 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 18/78 (23%) Frame = +3 Query: 117 PDQKSGKVELQ---YLHDYAGINASIGLTANPVVNLSAAFG---------------TSAL 242 PD +G V Y+HD+A +A++ L +NP+ L AA G A Sbjct: 367 PDANTGVVNFDIPGYIHDFASKDATVTLASNPLSWLVAATGWHYGEVDLCISWSRSKQAQ 426 Query: 243 AVGGDVSLDTSTKNFTKY 296 A G VS+ T+ +++ Y Sbjct: 427 AQEGSVSITTNYRDWGAY 444
>SRP_DROME (P52172) Box A-binding factor (ABF) (GATA-binding factor-B)| (Transcription factor GATA-B) (dGATA-B) (Protein serpent) Length = 1264 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = -3 Query: 273 MYQATHHHQQLEH*FQTQQRG*L--QDWQSSQCLH*YQHNHVSTGA 142 ++Q HHHQQ H Q QQ+ Q Q Q H + HN+ ++ A Sbjct: 406 LHQQQHHHQQQLHHHQQQQQQLYHQQQQQQQQQQHHHHHNNSTSSA 451
>RBF1_CANAL (Q00312) Transcription factor RBF1 (RPG-box-binding factor)| (Repressor-activator protein 1) Length = 527 Score = 30.0 bits (66), Expect = 1.4 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Frame = -3 Query: 267 QATHHHQQLEH*FQTQQRG*LQDWQSSQCL---H*YQHNHVSTGAPPFQISDQEQQSSRW 97 QA HQQL+H +Q QQ+ Q Q SQ L H QH HV + E SR+ Sbjct: 122 QAQREHQQLQHAYQQQQQ-LHQLGQLSQQLAQPHLSQHEHVRDALTTDEFDTNEDLRSRY 180
>VDAC2_YEAST (P40478) Outer mitochondrial membrane protein porin 2| (Voltage-dependent anion-selective channel protein 2) (VDAC 2) Length = 281 Score = 28.9 bits (63), Expect = 3.2 Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 2/109 (1%) Frame = +3 Query: 36 SASNVITTITADDLAAPGLK-TILSFAVPDQ-KSGKVELQYLHDYAGINASIGLTANPVV 209 S N + T APG K + +F P K+ K L Y SI + Sbjct: 76 SNQNRLNTRIEFSKIAPGWKGDVNAFLTPQSIKNAKFNLSYAQKSFAARTSIDILQPKDF 135 Query: 210 NLSAAFGTSALAVGGDVSLDTSTKNFTKYNAAFSYTNQDLIASLNLNNK 356 S G G D++ DT+ +Y + Y ++ L+ NN+ Sbjct: 136 VGSVTLGHRGFVGGTDIAYDTAAGLCARYAMSIGYLAREYSFILSTNNR 184
>IXR1_YEAST (P33417) Intrastrand crosslink recognition protein| (Structure-specific recognition protein) (SSRP) Length = 597 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -3 Query: 267 QATHHHQQLEH*FQTQQRG*LQDWQSSQCLH 175 Q THH QQ++ Q QQ+ LQ Q Q H Sbjct: 283 QLTHHQQQMQQQLQLQQQQQLQQQQQLQQQH 313
>GLTS_HAEIN (P45240) Sodium/glutamate symport carrier protein (Glutamate| permease) Length = 404 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -1 Query: 344 VQGCDKILVSVAKRSIVFGEILGGCIKRHIXXXXXXXXSKRSREVD 207 +QG +I ++ A +VFG I+GG + R + + + EVD Sbjct: 155 LQGATEIAIACATFGLVFGGIIGGPVARFLLNRQKQGENPENDEVD 200
>VN34_ROTBS (P34717) Nonstructural RNA-binding protein 34 (NS34) (NCVP4)| Length = 402 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/55 (21%), Positives = 25/55 (45%) Frame = +3 Query: 198 NPVVNLSAAFGTSALAVGGDVSLDTSTKNFTKYNAAFSYTNQDLIASLNLNNKGD 362 NP++ ++ F + + GD+ L+ K N + N +I + ++N D Sbjct: 308 NPLIVANSKFQIDRILISGDIELNPGPNALVKLNDCITKYNLKIICTFDVNLDDD 362
>CYB6_SKECO (O96801) Cytochrome b6| Length = 215 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/20 (55%), Positives = 17/20 (85%) Frame = +1 Query: 115 FLIRNLERWSSSTYMIMLVL 174 +LIR++ RWS+S ++MLVL Sbjct: 80 WLIRSIHRWSASMMVMMLVL 99
>CYB6_GRATL (Q6B903) Cytochrome b6| Length = 215 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/20 (50%), Positives = 17/20 (85%) Frame = +1 Query: 115 FLIRNLERWSSSTYMIMLVL 174 +LIR++ RWS+S ++ML+L Sbjct: 80 WLIRSIHRWSASMMVLMLIL 99
>CYB6_CYAME (Q85G16) Cytochrome b6| Length = 215 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/20 (50%), Positives = 17/20 (85%) Frame = +1 Query: 115 FLIRNLERWSSSTYMIMLVL 174 +LIR+L RWS+S ++M++L Sbjct: 80 WLIRSLHRWSASMMVLMMIL 99
>CYB6_CYACA (Q9TLZ7) Cytochrome b6| Length = 215 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/20 (50%), Positives = 17/20 (85%) Frame = +1 Query: 115 FLIRNLERWSSSTYMIMLVL 174 +LIR+L RWS+S ++M++L Sbjct: 80 WLIRSLHRWSASMMVLMMIL 99 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,700,969 Number of Sequences: 219361 Number of extensions: 813273 Number of successful extensions: 2462 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2385 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2457 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
