| Clone Name | bags31p04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X77733.1|TAVDAC1 T.aestivum VDAC 1 mRNA Length = 1159 Score = 527 bits (266), Expect = e-147 Identities = 336/358 (93%), Gaps = 1/358 (0%) Strand = Plus / Plus Query: 8 aacatcaccgtagnatgtgaaggcaaactcggcatcaaatgtcattacaacaattaccgc 67 |||||||| |||| |||||||||| ||||| ||||| ||||||||||| |||||||| || Sbjct: 238 aacatcactgtag-atgtgaaggccaactcagcatcgaatgtcattactacaattactgc 296 Query: 68 tgacgatcttgcagcgccagggctgaagaccatcttgagctttgctgttcctgatcagaa 127 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 297 tgacgatcttgcagcaccaggcctgaagaccatcttgagctttgctgttcctgatcagaa 356 Query: 128 atctggaaaggtggagctccagtacttacatgattatgctggtattaatgcaagcattgg 187 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 357 atctggaaaggttgagctccagtacttgcatgattatgctggtattaatgcaagcattgg 416 Query: 188 cttgactgccaatcctgtagtcaacctctctgctgcgtttggaactagtgctctagctgt 247 |||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| Sbjct: 417 cttgactgccaatcctgtagtcaacctctccggcgcgttcggaactagtgctctagctgt 476 Query: 248 tggtggtgatgtgtcgcttgatacatccaccaagaatttcaccaaatacaatgctgcgtt 307 ||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||| | Sbjct: 477 tggtgctgacgtgtcgcttgatacagccaccaagaatttcgccaaatacaatgctgcact 536 Query: 308 tagctacactaaccaagatcttatcgcatccctgaacctgaacaacaagggagacagc 365 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 537 tagctacactaaccaggatcttatcgcatccctgaacctgaacaacaagggagacagc 594
>gb|AY104870.1| Zea mays PCO081914 mRNA sequence Length = 1445 Score = 254 bits (128), Expect = 2e-64 Identities = 290/344 (84%) Strand = Plus / Plus Query: 22 atgtgaaggcaaactcggcatcaaatgtcattacaacaattaccgctgacgatcttgcag 81 ||||||| |||||||||| |||||| ||||||| |||||||| | ||| || ||||| Sbjct: 403 atgtgaaagcaaactcggagtcaaatatcattacgacaattactgttgatgagattgcaa 462 Query: 82 cgccagggctgaagaccatcttgagctttgctgttcctgatcagaaatctggaaaggtgg 141 | |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| | Sbjct: 463 caccagggctgaagaccatcttaagctttgctgttcctgatcagagatctggaaaggttg 522 Query: 142 agctccagtacttacatgattatgctggtattaatgcaagcattggcttgactgccaatc 201 |||||||||| || |||||||||||||| ||||||||||||| || |||| ||||||| Sbjct: 523 agctccagtatttgcatgattatgctggagttaatgcaagcatcggtctgacagccaatc 582 Query: 202 ctgtagtcaacctctctgctgcgtttggaactagtgctctagctgttggtggtgatgtgt 261 |||||||||||||||||||||| ||||| |||| ||| | || ||||||| ||| | | Sbjct: 583 ctgtagtcaacctctctgctgcctttggtactaaggctgttgcagttggtgccgatatct 642 Query: 262 cgcttgatacatccaccaagaatttcaccaaatacaatgctgcgtttagctacactaacc 321 | |||||||| | || ||| || || |||||||||||||| | || | |||| | Sbjct: 643 cacttgatactgcaactgggaacttgactaaatacaatgctgcactgaggttcactcatg 702 Query: 322 aagatcttatcgcatccctgaacctgaacaacaagggagacagc 365 |||| ||| ||||||||||||||||||||||||||||||||||| Sbjct: 703 aagaccttgtcgcatccctgaacctgaacaacaagggagacagc 746
>gb|BT016888.1| Zea mays clone Contig721 mRNA sequence Length = 1209 Score = 248 bits (125), Expect = 1e-62 Identities = 284/337 (84%) Strand = Plus / Minus Query: 22 atgtgaaggcaaactcggcatcaaatgtcattacaacaattaccgctgacgatcttgcag 81 ||||||| |||||||||| |||||| |||||||||||||||| | ||| || ||||| Sbjct: 901 atgtgaaagcaaactcggagtcaaatatcattacaacaattactgttgatgagattgcaa 842 Query: 82 cgccagggctgaagaccatcttgagctttgctgttcctgatcagaaatctggaaaggtgg 141 | |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| | Sbjct: 841 caccagggctgaagaccatcttaagctttgctgttcctgatcagagatctggaaaggttg 782 Query: 142 agctccagtacttacatgattatgctggtattaatgcaagcattggcttgactgccaatc 201 |||||||||| || |||||||||||||| ||||||||||||| || |||| ||||||| Sbjct: 781 agctccagtatttgcatgattatgctggagttaatgcaagcatcggtctgacagccaatc 722 Query: 202 ctgtagtcaacctctctgctgcgtttggaactagtgctctagctgttggtggtgatgtgt 261 |||||||||||||||||||||| ||||| |||| ||| | || ||||||| ||| | | Sbjct: 721 ctgtagtcaacctctctgctgcctttggtactaaggctgttgcagttggtgccgatatct 662 Query: 262 cgcttgatacatccaccaagaatttcaccaaatacaatgctgcgtttagctacactaacc 321 | |||||||| | || ||| || || |||||||||||||| | || | |||| | Sbjct: 661 cacttgatactgcaactgggaacttgactaaatacaatgctgcactgaggttcactcatg 602 Query: 322 aagatcttatcgcatccctgaacctgaacaacaaggg 358 |||| ||| |||||||||||||||||||||||||||| Sbjct: 601 aagaccttgtcgcatccctgaacctgaacaacaaggg 565
>gb|AF178950.1|AF178950 Zea mays voltage-dependent anion channel protein 1a (vdac1a) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1179 Score = 246 bits (124), Expect = 4e-62 Identities = 289/344 (84%) Strand = Plus / Plus Query: 22 atgtgaaggcaaactcggcatcaaatgtcattacaacaattaccgctgacgatcttgcag 81 ||||||| |||||||||| |||||| ||||||| |||||||| | ||| || ||||| Sbjct: 292 atgtgaaagcaaactcggagtcaaatatcattacgacaattactgttgatgagattgcaa 351 Query: 82 cgccagggctgaagaccatcttgagctttgctgttcctgatcagaaatctggaaaggtgg 141 | |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| | Sbjct: 352 caccagggctgaagaccatcttaagctttgctgttcctgatcagagatctggaaaggttg 411 Query: 142 agctccagtacttacatgattatgctggtattaatgcaagcattggcttgactgccaatc 201 |||||||||| || |||||||||||||| ||||||||||||| || |||| ||||||| Sbjct: 412 agctccagtatttgcatgattatgctggagttaatgcaagcatcggtctgacagccaatc 471 Query: 202 ctgtagtcaacctctctgctgcgtttggaactagtgctctagctgttggtggtgatgtgt 261 |||||||||||||||||||||| ||||| |||| ||| | || |||||| ||| | | Sbjct: 472 ctgtagtcaacctctctgctgcctttggtactaaggctgttgcacttggtgccgatatct 531 Query: 262 cgcttgatacatccaccaagaatttcaccaaatacaatgctgcgtttagctacactaacc 321 | |||||||| | || ||| || || |||||||||||||| | || | |||| | Sbjct: 532 cacttgatactgcaactgggaacttgactaaatacaatgctgcactgaggttcactcatg 591 Query: 322 aagatcttatcgcatccctgaacctgaacaacaagggagacagc 365 |||| ||| ||||||||||||||||||||||||||||||||||| Sbjct: 592 aagaccttgtcgcatccctgaacctgaacaacaagggagacagc 635
>gb|BT016491.1| Zea mays clone Contig324 mRNA sequence Length = 1330 Score = 167 bits (84), Expect = 3e-38 Identities = 231/280 (82%) Strand = Plus / Plus Query: 84 ccagggctgaagaccatcttgagctttgctgttcctgatcagaaatctggaaaggtggag 143 ||||| |||||||| ||||| |||||||||||||||||||||| |||||||||||| ||| Sbjct: 414 ccaggactgaagactatcttaagctttgctgttcctgatcagagatctggaaaggttgag 473 Query: 144 ctccagtacttacatgattatgctggtattaatgcaagcattggcttgactgccaatcct 203 || ||||| || |||||||||||||| ||||||||||| || | |||| ||||||||| Sbjct: 474 cttcagtatttgcatgattatgctggagttaatgcaagcgttagtctgacagccaatcct 533 Query: 204 gtagtcaacctctctgctgcgtttggaactagtgctctagctgttggtggtgatgtgtcg 263 |||| ||||||||||||||| ||||| |||| ||||| || ||||||| || | || Sbjct: 534 gtagccaacctctctgctgcttttggcactaaggctctcgcagttggtgcagagatctca 593 Query: 264 cttgatacatccaccaagaatttcaccaaatacaatgctgcgtttagctacactaaccaa 323 ||||| | |||| ||| ||||||||||||||||||| || | | |||| | || Sbjct: 594 tttgattctgccactgggaacttcaccaaatacaatgctggattgatgttcactcatgaa 653 Query: 324 gatcttatcgcatccctgaacctgaacaacaagggagaca 363 || |||||||||||||| || |||||||||||||||||| Sbjct: 654 gaccttatcgcatcccttaatatgaacaacaagggagaca 693
>ref|XM_450604.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1124 Score = 165 bits (83), Expect = 1e-37 Identities = 224/271 (82%) Strand = Plus / Plus Query: 91 tgaagaccatcttgagctttgctgttcctgatcagaaatctggaaaggtggagctccagt 150 ||||| |||||||||||||||||||||| ||||| | |||||||||| | ||||| || | Sbjct: 355 tgaagtccatcttgagctttgctgttccggatcaaagatctggaaagtttgagcttcaat 414 Query: 151 acttacatgattatgctggtattaatgcaagcattggcttgactgccaatcctgtagtca 210 ||| ||||||||||||||| ||| |||||| ||||| |||||||||| ||||||||||| Sbjct: 415 actcgcatgattatgctggtgttagtgcaagtattggtttgactgccagtcctgtagtca 474 Query: 211 acctctctgctgcgtttggaactagtgctctagctgttggtggtgatgtgtcgcttgata 270 | ||||| || |||||||| | ||||| |||||||||| |||||| || ||||||| Sbjct: 475 atctctccagtgtttttggaaccaaggctcttgctgttggtgctgatgtctcacttgata 534 Query: 271 catccaccaagaatttcaccaaatacaatgctgcgtttagctacactaaccaagatctta 330 | |||| ||| || |||||||| ||||||| || |||| || ||| | ||||||| Sbjct: 535 ccgccacggggaacttgaccaaatataatgctggattgagcttcagtaatgatgatctta 594 Query: 331 tcgcatccctgaacctgaacaacaagggaga 361 |||| || |||||||||||||||||||||| Sbjct: 595 tcgcgtcattgaacctgaacaacaagggaga 625
>emb|Y18104.1|OSA18104 Oryza sativa mRNA for voltage-dependent anion channel Length = 1093 Score = 165 bits (83), Expect = 1e-37 Identities = 224/271 (82%) Strand = Plus / Plus Query: 91 tgaagaccatcttgagctttgctgttcctgatcagaaatctggaaaggtggagctccagt 150 ||||| |||||||||||||||||||||| ||||| | |||||||||| | ||||| || | Sbjct: 292 tgaagtccatcttgagctttgctgttccggatcaaagatctggaaagtttgagcttcaat 351 Query: 151 acttacatgattatgctggtattaatgcaagcattggcttgactgccaatcctgtagtca 210 ||| ||||||||||||||| ||| |||||| ||||| |||||||||| ||||||||||| Sbjct: 352 actcgcatgattatgctggtgttagtgcaagtattggtttgactgccagtcctgtagtca 411 Query: 211 acctctctgctgcgtttggaactagtgctctagctgttggtggtgatgtgtcgcttgata 270 | ||||| || |||||||| | ||||| |||||||||| |||||| || ||||||| Sbjct: 412 atctctccagtgtttttggaaccaaggctcttgctgttggtgctgatgtctcacttgata 471 Query: 271 catccaccaagaatttcaccaaatacaatgctgcgtttagctacactaaccaagatctta 330 | |||| ||| || |||||||| ||||||| || |||| || ||| | ||||||| Sbjct: 472 ccgccacggggaacttgaccaaatataatgctggattgagcttcagtaatgatgatctta 531 Query: 331 tcgcatccctgaacctgaacaacaagggaga 361 |||| || |||||||||||||||||||||| Sbjct: 532 tcgcgtcattgaacctgaacaacaagggaga 562
>dbj|AK061261.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-C01, full insert sequence Length = 1125 Score = 165 bits (83), Expect = 1e-37 Identities = 224/271 (82%) Strand = Plus / Plus Query: 91 tgaagaccatcttgagctttgctgttcctgatcagaaatctggaaaggtggagctccagt 150 ||||| |||||||||||||||||||||| ||||| | |||||||||| | ||||| || | Sbjct: 355 tgaagtccatcttgagctttgctgttccggatcaaagatctggaaagtttgagcttcaat 414 Query: 151 acttacatgattatgctggtattaatgcaagcattggcttgactgccaatcctgtagtca 210 ||| ||||||||||||||| ||| |||||| ||||| |||||||||| ||||||||||| Sbjct: 415 actcgcatgattatgctggtgttagtgcaagtattggtttgactgccagtcctgtagtca 474 Query: 211 acctctctgctgcgtttggaactagtgctctagctgttggtggtgatgtgtcgcttgata 270 | ||||| || |||||||| | ||||| |||||||||| |||||| || ||||||| Sbjct: 475 atctctccagtgtttttggaaccaaggctcttgctgttggtgctgatgtctcacttgata 534 Query: 271 catccaccaagaatttcaccaaatacaatgctgcgtttagctacactaaccaagatctta 330 | |||| ||| || |||||||| ||||||| || |||| || ||| | ||||||| Sbjct: 535 ccgccacggggaacttgaccaaatataatgctggattgagcttcagtaatgatgatctta 594 Query: 331 tcgcatccctgaacctgaacaacaagggaga 361 |||| || |||||||||||||||||||||| Sbjct: 595 tcgcgtcattgaacctgaacaacaagggaga 625
>dbj|AK060652.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H05, full insert sequence Length = 1242 Score = 165 bits (83), Expect = 1e-37 Identities = 224/271 (82%) Strand = Plus / Plus Query: 91 tgaagaccatcttgagctttgctgttcctgatcagaaatctggaaaggtggagctccagt 150 ||||| |||||||||||||||||||||| ||||| | |||||||||| | ||||| || | Sbjct: 369 tgaagtccatcttgagctttgctgttccggatcaaagatctggaaagtttgagcttcaat 428 Query: 151 acttacatgattatgctggtattaatgcaagcattggcttgactgccaatcctgtagtca 210 ||| ||||||||||||||| ||| |||||| ||||| |||||||||| ||||||||||| Sbjct: 429 actcgcatgattatgctggtgttagtgcaagtattggtttgactgccagtcctgtagtca 488 Query: 211 acctctctgctgcgtttggaactagtgctctagctgttggtggtgatgtgtcgcttgata 270 | ||||| || |||||||| | ||||| |||||||||| |||||| || ||||||| Sbjct: 489 atctctccagtgtttttggaaccaaggctcttgctgttggtgctgatgtctcacttgata 548 Query: 271 catccaccaagaatttcaccaaatacaatgctgcgtttagctacactaaccaagatctta 330 | |||| ||| || |||||||| ||||||| || |||| || ||| | ||||||| Sbjct: 549 ccgccacggggaacttgaccaaatataatgctggattgagcttcagtaatgatgatctta 608 Query: 331 tcgcatccctgaacctgaacaacaagggaga 361 |||| || |||||||||||||||||||||| Sbjct: 609 tcgcgtcattgaacctgaacaacaagggaga 639
>gb|AF178951.1|AF178951 Zea mays voltage-dependent anion channel protein 1b (vdac1b) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1175 Score = 159 bits (80), Expect = 8e-36 Identities = 230/280 (82%) Strand = Plus / Plus Query: 84 ccagggctgaagaccatcttgagctttgctgttcctgatcagaaatctggaaaggtggag 143 ||||| |||||||| ||||| |||||||||||||||||||||| |||||||||||| ||| Sbjct: 409 ccaggactgaagactatcttaagctttgctgttcctgatcagagatctggaaaggttgag 468 Query: 144 ctccagtacttacatgattatgctggtattaatgcaagcattggcttgactgccaatcct 203 || ||||| || |||||||||||||| ||||||||||| || | |||| ||||||||| Sbjct: 469 cttcagtatttgcatgattatgctggagttaatgcaagcgttagtctgacagccaatcct 528 Query: 204 gtagtcaacctctctgctgcgtttggaactagtgctctagctgttggtggtgatgtgtcg 263 |||| |||||||||||||| ||||| |||| ||||| || ||||||| || | || Sbjct: 529 gtagccaacctctctgctggctttggcactaaggctctcgcagttggtgcagaaatctca 588 Query: 264 cttgatacatccaccaagaatttcaccaaatacaatgctgcgtttagctacactaaccaa 323 ||||| | |||| ||| ||||||||||||||||||| || | | |||| | || Sbjct: 589 tttgattctgccactgggaacttcaccaaatacaatgctggattgatgttcactcatgaa 648 Query: 324 gatcttatcgcatccctgaacctgaacaacaagggagaca 363 || |||||||||||||| || |||||||||||||||||| Sbjct: 649 gaccttatcgcatcccttaatatgaacaacaagggagaca 688
>dbj|AK072129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126C04, full insert sequence Length = 3071 Score = 137 bits (69), Expect = 3e-29 Identities = 153/181 (84%) Strand = Plus / Plus Query: 91 tgaagaccatcttgagctttgctgttcctgatcagaaatctggaaaggtggagctccagt 150 ||||| |||||||||||||||||||||| ||||| | |||||||||| | ||||| || | Sbjct: 1658 tgaagtccatcttgagctttgctgttccggatcaaagatctggaaagtttgagcttcaat 1717 Query: 151 acttacatgattatgctggtattaatgcaagcattggcttgactgccaatcctgtagtca 210 ||| ||||||||||||||| ||| |||||| ||||| |||||||||| ||||||||||| Sbjct: 1718 actcgcatgattatgctggtgttagtgcaagtattggtttgactgccagtcctgtagtca 1777 Query: 211 acctctctgctgcgtttggaactagtgctctagctgttggtggtgatgtgtcgcttgata 270 | ||||| || |||||||| | ||||| |||||||||| |||||| || ||||||| Sbjct: 1778 atctctccagtgtttttggaaccaaggctcttgctgttggtgctgatgtctcacttgata 1837 Query: 271 c 271 | Sbjct: 1838 c 1838
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 87.7 bits (44), Expect = 2e-14 Identities = 98/116 (84%) Strand = Plus / Plus Query: 156 catgattatgctggtattaatgcaagcattggcttgactgccaatcctgtagtcaacctc 215 ||||||||||||||| ||| |||||| ||||| |||||||||| |||||||||||| ||| Sbjct: 11753818 catgattatgctggtgttagtgcaagtattggtttgactgccagtcctgtagtcaatctc 11753877 Query: 216 tctgctgcgtttggaactagtgctctagctgttggtggtgatgtgtcgcttgatac 271 || || |||||||| | ||||| |||||||||| |||||| || |||||||| Sbjct: 11753878 tccagtgtttttggaaccaaggctcttgctgttggtgctgatgtctcacttgatac 11753933 Score = 65.9 bits (33), Expect = 8e-08 Identities = 45/49 (91%) Strand = Plus / Plus Query: 91 tgaagaccatcttgagctttgctgttcctgatcagaaatctggaaaggt 139 ||||| |||||||||||||||||||||| ||||| | |||||||||||| Sbjct: 11753666 tgaagtccatcttgagctttgctgttccggatcaaagatctggaaaggt 11753714
>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711F01 Length = 193091 Score = 87.7 bits (44), Expect = 2e-14 Identities = 98/116 (84%) Strand = Plus / Plus Query: 156 catgattatgctggtattaatgcaagcattggcttgactgccaatcctgtagtcaacctc 215 ||||||||||||||| ||| |||||| ||||| |||||||||| |||||||||||| ||| Sbjct: 188452 catgattatgctggtgttagtgcaagtattggtttgactgccagtcctgtagtcaatctc 188511 Query: 216 tctgctgcgtttggaactagtgctctagctgttggtggtgatgtgtcgcttgatac 271 || || |||||||| | ||||| |||||||||| |||||| || |||||||| Sbjct: 188512 tccagtgtttttggaaccaaggctcttgctgttggtgctgatgtctcacttgatac 188567 Score = 65.9 bits (33), Expect = 8e-08 Identities = 45/49 (91%) Strand = Plus / Plus Query: 91 tgaagaccatcttgagctttgctgttcctgatcagaaatctggaaaggt 139 ||||| |||||||||||||||||||||| ||||| | |||||||||||| Sbjct: 188300 tgaagtccatcttgagctttgctgttccggatcaaagatctggaaaggt 188348
>gb|AF093538.1|AF093538 Zea mays voltage-dependent anion-selective channel protein mRNA, partial cds Length = 321 Score = 87.7 bits (44), Expect = 2e-14 Identities = 111/132 (84%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 8 aacatcaccgtagnatgtgaaggcaaactcggcatcaaatgtcattacaacaattaccgc 67 ||||| ||||||| ||||||| |||||||| | |||||| ||||||| ||| |||| || Sbjct: 187 aacatgaccgtag-atgtgaaagcaaactcagagtcaaatatcattactacagttactgc 245 Query: 68 tgacgatcttgcagcgccagggctgaagaccatcttgagctttgctgttcctgatcagaa 127 | || ||||| | ||||| |||||||| ||||| |||||||||||||||||||||| Sbjct: 246 acatgagattgcaacaccaggactgaagactatcttaagctttgctgttcctgatcagag 305 Query: 128 atctggaaaggt 139 |||||||||||| Sbjct: 306 atctggaaaggt 317
>gb|BT014102.1| Lycopersicon esculentum clone 133206R, mRNA sequence Length = 1133 Score = 73.8 bits (37), Expect = 3e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 81 gcgccagggctgaagaccatcttgagctttgctgttcctgatcagaaatctggaaaggtg 140 |||||||| || ||||| || || ||||||| ||| || || ||||| ||||||||||| Sbjct: 335 gcgccaggactcaagacaattttcagctttgttgtaccagaccagaagtctggaaaggta 394 Query: 141 gagctccagtacttacatgattatgctgg 169 |||||||||||||| ||||| |||||||| Sbjct: 395 gagctccagtacttgcatgagtatgctgg 423
>gb|AY316737.1| Lotus corniculatus var. japonicus VDAC1.1 mRNA, complete cds Length = 1203 Score = 61.9 bits (31), Expect = 1e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 114 gttcctgatcagaaatctggaaaggtggagctccagtacttacatgattatgctggtat 172 ||||||||||| | ||||||||||||||||| || ||||| ||||| ||||||||||| Sbjct: 371 gttcctgatcaaaggtctggaaaggtggagcttcaatacttgcatgactatgctggtat 429
>emb|X80388.1|STPORIN3 S.tuberosum pPOM36I mRNA for 36kDA porinI Length = 1030 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 123 cagaaatctggaaaggtggagctccagtacttacatgattatgctgg 169 ||||| ||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 304 cagaagtctggaaaggtagagctccagtacttgcatgagtatgctgg 350
>emb|X80387.1|STPORIN2 S.tuberosum pPOM36II mRNA for 36kDa porinII Length = 1060 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 123 cagaaatctggaaaggtggagctccagtacttacatgattatgctgg 169 ||||| ||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 344 cagaagtctggaaaggtagagctccagtacttgcatgagtatgctgg 390
>gb|AF139498.1|AF139498 Prunus armeniaca porin (mPOR) mRNA, nuclear gene encoding mitochondrial product, complete cds Length = 1119 Score = 58.0 bits (29), Expect = 2e-05 Identities = 92/113 (81%) Strand = Plus / Plus Query: 90 ctgaagaccatcttgagctttgctgttcctgatcagaaatctggaaaggtggagctccag 149 |||||| | ||||| |||||| ||| ||||| |||| |||||| |||||||||||||| Sbjct: 332 ctgaaggcaatctttagctttattgtacctgaccagagatctggcaaggtggagctccaa 391 Query: 150 tacttacatgattatgctggtattaatgcaagcattggcttgactgccaatcc 202 || ||||| |||||||| || | | | |||||||| |||||||||||||| Sbjct: 392 tatcagcatgagtatgctggaataagtactagcattgggttgactgccaatcc 444
>gb|U50900.1|SOU50900 Spinacia oleracea voltage-dependent anion channel protein (SVDAC1) mRNA, complete cds Length = 1180 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 113 tgttcctgatcagaaatctggaaaggtggagctccagtacttacatgattatgctgg 169 |||||||||||||| |||||| ||||| ||||| ||||| || ||||| |||||||| Sbjct: 355 tgttcctgatcagagatctggcaaggttgagcttcagtatttgcatgagtatgctgg 411
>gb|AY316739.1| Lotus corniculatus var. japonicus VDAC1.3 mRNA, complete cds Length = 1069 Score = 56.0 bits (28), Expect = 8e-05 Identities = 67/80 (83%) Strand = Plus / Plus Query: 90 ctgaagaccatcttgagctttgctgttcctgatcagaaatctggaaaggtggagctccag 149 |||||||| || || |||||| | |||| |||||||||||||| |||||||| ||||| Sbjct: 296 ctgaagacaatttttagctttatttttccagatcagaaatctggcaaggtggaactccaa 355 Query: 150 tacttacatgattatgctgg 169 ||| |||||| |||||||| Sbjct: 356 taccaacatgaatatgctgg 375
>gb|AY316738.1| Lotus corniculatus var. japonicus VDAC1.2 mRNA, complete cds Length = 1103 Score = 56.0 bits (28), Expect = 8e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 114 gttcctgatcagaaatctggaaaggtggagctccagtacttacatgattatgctgg 169 ||||||||||| | |||||||||||||| || |||||||| ||||| |||||||| Sbjct: 319 gttcctgatcaaaggtctggaaaggtggaacttcagtacttgcatgactatgctgg 374
>gb|DQ072165.1| Phaseolus coccineus mitochrondrial voltage-dependent anion-selective channel mRNA, complete cds; nuclear gene for mitochondrial product Length = 831 Score = 56.0 bits (28), Expect = 8e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 114 gttcctgatcagaaatctggaaaggtggagctccagtacttacatgattatgctgg 169 |||||||| |||| |||||||||||||| || |||||||| ||||| |||||||| Sbjct: 292 gttcctgaccagaggtctggaaaggtggaacttcagtacttgcatgactatgctgg 347
>gb|DQ296180.1| Brassica rapa clone 219 unknown mRNA Length = 1117 Score = 56.0 bits (28), Expect = 8e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 117 cctgatcagaaatctggaaaggtggagctccagtacttacatgattatgctggtat 172 ||||||||||||||||| ||||| ||||||||||| | || || ||||||||||| Sbjct: 355 cctgatcagaaatctggcaaggttgagctccagtatctgcacgactatgctggtat 410
>emb|X82149.1|TAVDAC2 T.aestivum VDAC2 mRNA for voltage dependent anion channel Length = 1174 Score = 50.1 bits (25), Expect = 0.005 Identities = 61/73 (83%) Strand = Plus / Plus Query: 285 ttcaccaaatacaatgctgcgtttagctacactaaccaagatcttatcgcatccctgaac 344 |||||||| |||||||||| | ||| |||||||||||||||||| || || |||| Sbjct: 460 ttcaccaagtacaatgctggactgagccacactaaccaagatcttactgcttcgttgaat 519 Query: 345 ctgaacaacaagg 357 ||||||||||||| Sbjct: 520 ctgaacaacaagg 532
>emb|AL845158.5| Mouse DNA sequence from clone RP23-147E6 on chromosome 4 Contains a component of oligomeric golgi complex 1 (Cog5) pseudogene and part of the Ptprd gene for receptor type protein tyrosine phosphatase D, complete sequence Length = 198523 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 141 gagctccagtacttacatgatt 162 |||||||||||||||||||||| Sbjct: 18195 gagctccagtacttacatgatt 18216
>ref|NM_121513.3| Arabidopsis thaliana voltage-gated ion-selective channel AT5G15090 mRNA, complete cds Length = 1254 Score = 42.1 bits (21), Expect = 1.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 120 gatcagaaatctggaaaggtggagctccagtacttacatgattatgctggtat 172 ||||| ||||||||||||| ||| | ||||| || ||||| ||||||||||| Sbjct: 381 gatcacaaatctggaaaggctgaggttcagtatttccatgactatgctggtat 433
>ref|XM_475771.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 843 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 ctgaacaacaagggagacagc 365 ||||||||||||||||||||| Sbjct: 541 ctgaacaacaagggagacagc 561
>emb|AL162273.13| Human DNA sequence from clone RP11-215N21 on chromosome 10 Contains the 3' end of a novel gene and a CpG island, complete sequence Length = 103011 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 150 tacttacatgattatgctggtattaatgc 178 ||||||||| |||||| |||||||||||| Sbjct: 47336 tacttacatcattatgatggtattaatgc 47308
>gb|AY122918.1| Arabidopsis thaliana putative voltage-dependent anion-selective channel protein hsr2 (At5g15090) mRNA, complete cds Length = 856 Score = 42.1 bits (21), Expect = 1.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 120 gatcagaaatctggaaaggtggagctccagtacttacatgattatgctggtat 172 ||||| ||||||||||||| ||| | ||||| || ||||| ||||||||||| Sbjct: 298 gatcacaaatctggaaaggctgaggttcagtatttccatgactatgctggtat 350
>gb|AY063891.1| Arabidopsis thaliana putative voltage-dependent anion-selective channel protein hsr2 (At5g15090) mRNA, complete cds Length = 1250 Score = 42.1 bits (21), Expect = 1.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 120 gatcagaaatctggaaaggtggagctccagtacttacatgattatgctggtat 172 ||||| ||||||||||||| ||| | ||||| || ||||| ||||||||||| Sbjct: 369 gatcacaaatctggaaaggctgaggttcagtatttccatgactatgctggtat 421
>gb|AC009386.14| Homo sapiens 12 BAC RP11-447I10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164012 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 150 tacttacatgattatgctggtattaatgc 178 ||||||||| |||||| |||||||||||| Sbjct: 83913 tacttacatcattatgatggtattaatgc 83885
>emb|BX829828.1|CNS0A1JA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB3ZC12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1028 Score = 42.1 bits (21), Expect = 1.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 120 gatcagaaatctggaaaggtggagctccagtacttacatgattatgctggtat 172 ||||| ||||||||||||| ||| | ||||| || ||||| ||||||||||| Sbjct: 345 gatcacaaatctggaaaggctgaggttcagtatttccatgactatgctggtat 397
>emb|BX829727.1|CNS0A1A1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB31ZF07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1029 Score = 42.1 bits (21), Expect = 1.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 120 gatcagaaatctggaaaggtggagctccagtacttacatgattatgctggtat 172 ||||| ||||||||||||| ||| | ||||| || ||||| ||||||||||| Sbjct: 342 gatcacaaatctggaaaggctgaggttcagtatttccatgactatgctggtat 394
>emb|BX829477.1|CNS0A1F7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB16ZB10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1503 Score = 42.1 bits (21), Expect = 1.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 120 gatcagaaatctggaaaggtggagctccagtacttacatgattatgctggtat 172 ||||| ||||||||||||| ||| | ||||| || ||||| ||||||||||| Sbjct: 840 gatcacaaatctggaaaggctgaggttcagtatttccatgactatgctggtat 892
>gb|AY085248.1| Arabidopsis thaliana clone 1417 mRNA, complete sequence Length = 1111 Score = 42.1 bits (21), Expect = 1.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 120 gatcagaaatctggaaaggtggagctccagtacttacatgattatgctggtat 172 ||||| ||||||||||||| ||| | ||||| || ||||| ||||||||||| Sbjct: 370 gatcacaaatctggaaaggctgaggttcagtatttccatgactatgctggtat 422
>emb|AJ251562.1|OSA251562 Oryza sativa mRNA for voltage-dependent anion channel (VDAC2 gene) Length = 1189 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 ctgaacaacaagggagacagc 365 ||||||||||||||||||||| Sbjct: 580 ctgaacaacaagggagacagc 600
>emb|AJ131391.1|ATH131391 Arabidopsis thaliana mRNA for voltage-dependent anion-selective channel protein Length = 1107 Score = 42.1 bits (21), Expect = 1.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 120 gatcagaaatctggaaaggtggagctccagtacttacatgattatgctggtat 172 ||||| ||||||||||||| ||| | ||||| || ||||| ||||||||||| Sbjct: 352 gatcacaaatctggaaaggctgaggttcagtatttccatgactatgctggtat 404
>dbj|AK071833.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121K13, full insert sequence Length = 1231 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 ctgaacaacaagggagacagc 365 ||||||||||||||||||||| Sbjct: 624 ctgaacaacaagggagacagc 644
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 atccctgaacctgaacaacaa 355 ||||||||||||||||||||| Sbjct: 3828902 atccctgaacctgaacaacaa 3828882
>dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT40C04, TM0199, complete sequence Length = 123325 Score = 42.1 bits (21), Expect = 1.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 136 aggtggagctccagtacttacatgattatgctggtat 172 |||||||||| || ||||| ||||| ||||||||||| Sbjct: 120305 aggtggagcttcaatacttgcatgactatgctggtat 120269
>dbj|AP004901.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT13M13, TM0051b, complete sequence Length = 54022 Score = 42.1 bits (21), Expect = 1.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 136 aggtggagctccagtacttacatgattatgctggtat 172 |||||||||| || ||||| ||||| ||||||||||| Sbjct: 7913 aggtggagcttcaatacttgcatgactatgctggtat 7949
>emb|CR405683.10| Zebrafish DNA sequence from clone CH211-157B13 in linkage group 2, complete sequence Length = 166899 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gctacactaaccaagatctt 329 |||||||||||||||||||| Sbjct: 7438 gctacactaaccaagatctt 7419
>emb|AL353707.14| Human DNA sequence from clone RP11-553J6 on chromosome 9 Contains a ribosomal protein S19 (RPS19) pseudogene, complete sequence Length = 125373 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 accaagaatttcaccaaata 295 |||||||||||||||||||| Sbjct: 37039 accaagaatttcaccaaata 37058
>emb|AL136231.12| Human DNA sequence from clone RP11-6J24 on chromosome 9p24.1-24.3 Contains the 3' end of the SLC1A1 gene for solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), the 5' end of a novel gene (FLJ10058), the gene for Hsp90-associating relative of Cdc37 (HARC) (FLJ20639), the 3' end of the AK3L1 gene for adenylate kinase 3 like 1 (AK3), a ribosomal protein S6 (RPS6) pseudogene and 3 CpG islands, complete sequence Length = 160012 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 tttagctacactaaccaaga 325 |||||||||||||||||||| Sbjct: 89494 tttagctacactaaccaaga 89513
>emb|BX663493.8| Zebrafish DNA sequence from clone DKEY-183G16 in linkage group 2, complete sequence Length = 34449 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gaaggcaaactcggcatcaa 45 |||||||||||||||||||| Sbjct: 13500 gaaggcaaactcggcatcaa 13481
>gb|AF295653.1| Beta vulgaris voltage-dependent anion channel (por) gene, partial cds Length = 770 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 113 tgttcctgatcagaaatctggaaaggtg 140 |||||||||||||| |||||| |||||| Sbjct: 573 tgttcctgatcagagatctggcaaggtg 600
>gb|AC117231.4| Mus musculus BAC clone RP23-394M5 from 8, complete sequence Length = 195936 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 tttagctacactaaccaaga 325 |||||||||||||||||||| Sbjct: 61868 tttagctacactaaccaaga 61849
>emb|AL954379.17| Mouse DNA sequence from clone RP24-162K15 on chromosome 4, complete sequence Length = 72483 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tgaagaccatcttgagcttt 110 |||||||||||||||||||| Sbjct: 53286 tgaagaccatcttgagcttt 53305
>dbj|AP000484.5| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-14B22, complete sequences Length = 105149 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 tttagctacactaaccaaga 325 |||||||||||||||||||| Sbjct: 89307 tttagctacactaaccaaga 89288
>gb|BC082227.1| Xenopus laevis hypothetical LOC494637, mRNA (cDNA clone MGC:99384 IMAGE:7205622), complete cds Length = 772 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ttgagctttgctgttcctga 121 |||||||||||||||||||| Sbjct: 582 ttgagctttgctgttcctga 563 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,880,343 Number of Sequences: 3902068 Number of extensions: 2880343 Number of successful extensions: 80665 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80547 Number of HSP's gapped (non-prelim): 113 length of query: 365 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 343 effective length of database: 17,147,199,772 effective search space: 5881489521796 effective search space used: 5881489521796 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)