ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags32d23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467767.1| Oryza sativa (japonica cultivar-group), mRNA 151 9e-34
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 151 9e-34
3dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic D... 151 9e-34
4dbj|AK103517.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 9e-34
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 70 3e-09
6dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic D... 70 3e-09
7dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic D... 70 3e-09
8dbj|AK073517.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 3e-09
9dbj|AK066970.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 3e-09
10gb|AY107779.1| Zea mays PCO127499 mRNA sequence 70 3e-09
11ref|XM_618110.2| PREDICTED: Bos taurus similar to Tumor necrosis... 40 2.3
12gb|AY525329.1| Trichophyton rubrum actin (ACT) gene, complete cds 40 2.3
13ref|XM_580425.2| PREDICTED: Bos taurus similar to Thrombospondin... 40 2.3
14ref|XM_882196.1| PREDICTED: Bos taurus similar to Thrombospondin... 40 2.3
15ref|XM_882180.1| PREDICTED: Bos taurus similar to Thrombospondin... 40 2.3
16ref|XM_882163.1| PREDICTED: Bos taurus similar to Thrombospondin... 40 2.3
17ref|XM_882152.1| PREDICTED: Bos taurus similar to Thrombospondin... 40 2.3
18gb|AC008071.2| Homo sapiens BAC clone RP11-388L11 from 7, comple... 40 2.3
19gb|AC146630.25| Medicago truncatula clone mth2-7f22, complete se... 40 2.3
20gb|DQ214016.1| Taeniopygia guttata clone 0061P0012F10 protease s... 38 9.0
21ref|NM_001003360.2| Canis familiaris ATP-binding cassette, sub-f... 38 9.0
22gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 38 9.0
23gb|AC162793.8| Mus musculus chromosome 3, clone RP24-347H11, com... 38 9.0
24gb|AY427779.1| Canis familiaris isolate P1117 ABCA4 mRNA, comple... 38 9.0
25gb|AY427778.1| Canis familiaris isolate AS23 ABCA4 mRNA, complet... 38 9.0
26gb|AY427777.1| Canis familiaris isolate AS22 ABCA4 mRNA, complet... 38 9.0
27gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 9.0
28gb|AC124704.4| Mus musculus BAC clone RP23-480H24 from chromosom... 38 9.0
29gb|DQ423159.2| Solanum lycopersicoides cultivar LA2777 ATP-bindi... 38 9.0
30emb|AL358552.19| Human DNA sequence from clone RP11-10O5 on chro... 38 9.0
31emb|AL162853.17| Human DNA sequence from clone RP11-363G2 on chr... 38 9.0
32gb|AY142108.1| Gallus gallus tankyrase 1 mRNA, complete cds 38 9.0
33emb|BX842652.1| Bdellovibrio bacteriovorus complete genome, stra... 38 9.0
34ref|NM_007378.1| Mus musculus ATP-binding cassette, sub-family A... 38 9.0
35emb|BX569691.1| Synechococcus sp. WH8102 complete genome; segmen... 38 9.0
36gb|AC022746.10| Homo sapiens chromosome 10, clone RP11-567F2, co... 38 9.0
37gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chr... 38 9.0
38emb|AJ784316.1| Canis familiaris mRNA for retinal-specific ATP-b... 38 9.0
39emb|AJ639834.1| Canis familiaris partial abca4 gene for RIM ABC ... 38 9.0
40gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare str... 38 9.0
41dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 38 9.0
42gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 38 9.0
43ref|NM_080005.2| Drosophila melanogaster Rab-related protein 4 C... 38 9.0
44gb|AY075329.1| Drosophila melanogaster GH11193 full length cDNA 38 9.0
45gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome... 38 9.0
46dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.0
47ref|NM_204340.1| Gallus gallus tankyrase, TRF1-interacting ankyr... 38 9.0
48gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genom... 38 9.0
49dbj|AK065282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 9.0
50gb|AC101764.11| Mus musculus chromosome 3, clone RP24-471B15, co... 38 9.0
51gb|AE000512.1| Thermotoga maritima MSB8, complete genome 38 9.0
52gb|AF000149.1|MMAF000149 Mus musculus ATP-binding cassette trans... 38 9.0
53gb|BC057853.1| Mus musculus ATP-binding cassette, sub-family A (... 38 9.0
54dbj|D84317.1| Drosophila melanogaster mRNA for rab-related prote... 38 9.0 
>ref|XM_467767.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2018

 Score =  151 bits (76), Expect = 9e-34
 Identities = 142/164 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccggagtgcttccagaacagcgtgtttgggttgcccaaggggaagatagatgtggtgg 60
           |||||||||||||||||||  | |||||||| ||||| ||||||||||| ||||||||||
Sbjct: 525 agccggagtgcttccagaatggtgtgtttggcttgcctaaggggaagatcgatgtggtgg 584

                                                                       
Query: 61  agaagatccgaccaggggcgaagctgttcctgtatgactttgatctgaagcttctctatg 120
           |||||||||  |||||||| || |||||||| |||||||| || |||||||| |||||||
Sbjct: 585 agaagatccagccaggggcaaaactgttcctctatgacttcgacctgaagctgctctatg 644

                                                       
Query: 121 gggtgtacaaggcaacggcaaaaggagggatggatcttgtgcga 164
           || | |||||||| | | |||| |||||| | ||||||||||||
Sbjct: 645 ggatatacaaggccaagacaaagggagggttagatcttgtgcga 688
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  151 bits (76), Expect = 9e-34
 Identities = 142/164 (86%)
 Strand = Plus / Plus

                                                                            
Query: 1        agccggagtgcttccagaacagcgtgtttgggttgcccaaggggaagatagatgtggtgg 60
                |||||||||||||||||||  | |||||||| ||||| ||||||||||| ||||||||||
Sbjct: 31310241 agccggagtgcttccagaatggtgtgtttggcttgcctaaggggaagatcgatgtggtgg 31310300

                                                                            
Query: 61       agaagatccgaccaggggcgaagctgttcctgtatgactttgatctgaagcttctctatg 120
                |||||||||  |||||||| || |||||||| |||||||| || |||||||| |||||||
Sbjct: 31310301 agaagatccagccaggggcaaaactgttcctctatgacttcgacctgaagctgctctatg 31310360

                                                            
Query: 121      gggtgtacaaggcaacggcaaaaggagggatggatcttgtgcga 164
                || | |||||||| | | |||| |||||| | ||||||||||||
Sbjct: 31310361 ggatatacaaggccaagacaaagggagggttagatcttgtgcga 31310404
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>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1118_G04
          Length = 134464

 Score =  151 bits (76), Expect = 9e-34
 Identities = 142/164 (86%)
 Strand = Plus / Plus

                                                                         
Query: 1     agccggagtgcttccagaacagcgtgtttgggttgcccaaggggaagatagatgtggtgg 60
             |||||||||||||||||||  | |||||||| ||||| ||||||||||| ||||||||||
Sbjct: 80109 agccggagtgcttccagaatggtgtgtttggcttgcctaaggggaagatcgatgtggtgg 80168

                                                                         
Query: 61    agaagatccgaccaggggcgaagctgttcctgtatgactttgatctgaagcttctctatg 120
             |||||||||  |||||||| || |||||||| |||||||| || |||||||| |||||||
Sbjct: 80169 agaagatccagccaggggcaaaactgttcctctatgacttcgacctgaagctgctctatg 80228

                                                         
Query: 121   gggtgtacaaggcaacggcaaaaggagggatggatcttgtgcga 164
             || | |||||||| | | |||| |||||| | ||||||||||||
Sbjct: 80229 ggatatacaaggccaagacaaagggagggttagatcttgtgcga 80272
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>dbj|AK103517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131H10, full
           insert sequence
          Length = 2019

 Score =  151 bits (76), Expect = 9e-34
 Identities = 142/164 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccggagtgcttccagaacagcgtgtttgggttgcccaaggggaagatagatgtggtgg 60
           |||||||||||||||||||  | |||||||| ||||| ||||||||||| ||||||||||
Sbjct: 526 agccggagtgcttccagaatggtgtgtttggcttgcctaaggggaagatcgatgtggtgg 585

                                                                       
Query: 61  agaagatccgaccaggggcgaagctgttcctgtatgactttgatctgaagcttctctatg 120
           |||||||||  |||||||| || |||||||| |||||||| || |||||||| |||||||
Sbjct: 586 agaagatccagccaggggcaaaactgttcctctatgacttcgacctgaagctgctctatg 645

                                                       
Query: 121 gggtgtacaaggcaacggcaaaaggagggatggatcttgtgcga 164
           || | |||||||| | | |||| |||||| | ||||||||||||
Sbjct: 646 ggatatacaaggccaagacaaagggagggttagatcttgtgcga 689
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                           
Query: 60      gagaagatccgaccaggggcgaagctgttcctgtatgactttgatctgaagcttctctat 119
               ||||||||||||||||||  || | ||||||| ||||| |||||  ||||||| || |||
Sbjct: 6612026 gagaagatccgaccagggatgaggttgttcctctatgattttgacttgaagctactttat 6611967

                              
Query: 120     ggggtgtacaaggca 134
               |||||||||||||||
Sbjct: 6611966 ggggtgtacaaggca 6611952
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>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0425F05
          Length = 162858

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                         
Query: 60    gagaagatccgaccaggggcgaagctgttcctgtatgactttgatctgaagcttctctat 119
             ||||||||||||||||||  || | ||||||| ||||| |||||  ||||||| || |||
Sbjct: 46152 gagaagatccgaccagggatgaggttgttcctctatgattttgacttgaagctactttat 46093

                            
Query: 120   ggggtgtacaaggca 134
             |||||||||||||||
Sbjct: 46092 ggggtgtacaaggca 46078
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>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0690H04
          Length = 137319

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                          
Query: 60     gagaagatccgaccaggggcgaagctgttcctgtatgactttgatctgaagcttctctat 119
              ||||||||||||||||||  || | ||||||| ||||| |||||  ||||||| || |||
Sbjct: 128402 gagaagatccgaccagggatgaggttgttcctctatgattttgacttgaagctactttat 128343

                             
Query: 120    ggggtgtacaaggca 134
              |||||||||||||||
Sbjct: 128342 ggggtgtacaaggca 128328
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>dbj|AK073517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040I03, full
            insert sequence
          Length = 2636

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                        
Query: 60   gagaagatccgaccaggggcgaagctgttcctgtatgactttgatctgaagcttctctat 119
            ||||||||||||||||||  || | ||||||| ||||| |||||  ||||||| || |||
Sbjct: 1095 gagaagatccgaccagggatgaggttgttcctctatgattttgacttgaagctactttat 1154

                           
Query: 120  ggggtgtacaaggca 134
            |||||||||||||||
Sbjct: 1155 ggggtgtacaaggca 1169
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>dbj|AK066970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089B21, full
            insert sequence
          Length = 2977

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                        
Query: 60   gagaagatccgaccaggggcgaagctgttcctgtatgactttgatctgaagcttctctat 119
            ||||||||||||||||||  || | ||||||| ||||| |||||  ||||||| || |||
Sbjct: 1047 gagaagatccgaccagggatgaggttgttcctctatgattttgacttgaagctactttat 1106

                           
Query: 120  ggggtgtacaaggca 134
            |||||||||||||||
Sbjct: 1107 ggggtgtacaaggca 1121
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>gb|AY107779.1| Zea mays PCO127499 mRNA sequence
          Length = 1395

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                       
Query: 72  ccaggggcgaagctgttcctgtatgactttgatctgaagcttctctatggggtgtacaag 131
           |||||||  ||||||||||||||||| |||||  |||||||||| ||||| |||||||||
Sbjct: 139 ccaggggtcaagctgttcctgtatgattttgacttgaagcttctgtatggtgtgtacaag 198

              
Query: 132 gca 134
           |||
Sbjct: 199 gca 201
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>ref|XM_618110.2| PREDICTED: Bos taurus similar to Tumor necrosis factor receptor
           superfamily member 21 precursor (TNFR-related death
           receptor-6) (Death receptor 6) (LOC537922), mRNA
          Length = 1991

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 51  gatgtggtggagaagatccg 70
           ||||||||||||||||||||
Sbjct: 295 gatgtggtggagaagatccg 314
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>gb|AY525329.1| Trichophyton rubrum actin (ACT) gene, complete cds
          Length = 3429

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 128  caaggcaacggcaaaaggag 147
            ||||||||||||||||||||
Sbjct: 3059 caaggcaacggcaaaaggag 3040
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>ref|XM_580425.2| PREDICTED: Bos taurus similar to Thrombospondin-3 precursor,
           transcript variant 1 (LOC504323), mRNA
          Length = 3143

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 47  gatagatgtggtggagaagatccg 70
           ||||| ||||||||||||||||||
Sbjct: 151 gatagctgtggtggagaagatccg 174
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>ref|XM_882196.1| PREDICTED: Bos taurus similar to Thrombospondin-3 precursor,
           transcript variant 6 (LOC504323), mRNA
          Length = 3030

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 47  gatagatgtggtggagaagatccg 70
           ||||| ||||||||||||||||||
Sbjct: 151 gatagctgtggtggagaagatccg 174
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>ref|XM_882180.1| PREDICTED: Bos taurus similar to Thrombospondin-3 precursor,
           transcript variant 5 (LOC504323), mRNA
          Length = 2265

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 47  gatagatgtggtggagaagatccg 70
           ||||| ||||||||||||||||||
Sbjct: 151 gatagctgtggtggagaagatccg 174
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>ref|XM_882163.1| PREDICTED: Bos taurus similar to Thrombospondin-3 precursor,
           transcript variant 4 (LOC504323), mRNA
          Length = 1425

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 47  gatagatgtggtggagaagatccg 70
           ||||| ||||||||||||||||||
Sbjct: 151 gatagctgtggtggagaagatccg 174
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>ref|XM_882152.1| PREDICTED: Bos taurus similar to Thrombospondin-3 precursor,
           transcript variant 3 (LOC504323), mRNA
          Length = 2822

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 47  gatagatgtggtggagaagatccg 70
           ||||| ||||||||||||||||||
Sbjct: 151 gatagctgtggtggagaagatccg 174
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>gb|AC008071.2| Homo sapiens BAC clone RP11-388L11 from 7, complete sequence
          Length = 129938

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    gatagatgtggtggagaaga 66
             ||||||||||||||||||||
Sbjct: 98455 gatagatgtggtggagaaga 98474
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>gb|AC146630.25| Medicago truncatula clone mth2-7f22, complete sequence
          Length = 124189

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 44   gaagatagatgtggtggagaagat 67
            ||||| ||||||||||||||||||
Sbjct: 6371 gaagaaagatgtggtggagaagat 6394
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>gb|DQ214016.1| Taeniopygia guttata clone 0061P0012F10 protease serine 11 variant
           3-like mRNA, complete sequence
          Length = 1252

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 50  agatgtggtggagaagatc 68
           |||||||||||||||||||
Sbjct: 186 agatgtggtggagaagatc 204
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>ref|NM_001003360.2| Canis familiaris ATP-binding cassette, sub-family A (ABC1), member 4
            (ABCA4), mRNA
          Length = 7259

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 48   atagatgtggtggagaaga 66
            |||||||||||||||||||
Sbjct: 1771 atagatgtggtggagaaga 1789
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>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBb0024B16 map S2606, complete sequence
          Length = 124140

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   agatccgaccaggggcgaa 82
            |||||||||||||||||||
Sbjct: 9947 agatccgaccaggggcgaa 9965
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>gb|AC162793.8| Mus musculus chromosome 3, clone RP24-347H11, complete sequence
          Length = 154379

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 48   atagatgtggtggagaaga 66
            |||||||||||||||||||
Sbjct: 2178 atagatgtggtggagaaga 2160
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>gb|AY427779.1| Canis familiaris isolate P1117 ABCA4 mRNA, complete cds
          Length = 6810

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 48   atagatgtggtggagaaga 66
            |||||||||||||||||||
Sbjct: 1723 atagatgtggtggagaaga 1741
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>gb|AY427778.1| Canis familiaris isolate AS23 ABCA4 mRNA, complete cds
          Length = 6810

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 48   atagatgtggtggagaaga 66
            |||||||||||||||||||
Sbjct: 1723 atagatgtggtggagaaga 1741
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>gb|AY427777.1| Canis familiaris isolate AS22 ABCA4 mRNA, complete cds
          Length = 6810

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 48   atagatgtggtggagaaga 66
            |||||||||||||||||||
Sbjct: 1723 atagatgtggtggagaaga 1741
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 64       agatccgaccaggggcgaa 82
                |||||||||||||||||||
Sbjct: 27765818 agatccgaccaggggcgaa 27765836



 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 37       ccaaggggaagatagatgt 55
                |||||||||||||||||||
Sbjct: 14207749 ccaaggggaagatagatgt 14207767
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>gb|AC124704.4| Mus musculus BAC clone RP23-480H24 from chromosome 6, complete sequence
          Length = 185099

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    cagaacagcgtgtttgggt 33
             |||||||||||||||||||
Sbjct: 37236 cagaacagcgtgtttgggt 37218
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>gb|DQ423159.2| Solanum lycopersicoides cultivar LA2777 ATP-binding protein
           (At1g60440) gene, intron
          Length = 698

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 113 tctctatggggtgtacaag 131
           |||||||||||||||||||
Sbjct: 135 tctctatggggtgtacaag 153
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>emb|AL358552.19| Human DNA sequence from clone RP11-10O5 on chromosome 10, complete
              sequence
          Length = 164142

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 91     tgtatgactttgatctgaa 109
              |||||||||||||||||||
Sbjct: 111608 tgtatgactttgatctgaa 111626
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>emb|AL162853.17| Human DNA sequence from clone RP11-363G2 on chromosome 13 Contains a
              ribosomal protein L7a (RPL7A) pseudogene, a pseudogene
              similar to part of inositol hexakisphosphate kinase 1
              (IHPK1) (KIAA0263), a novel pseudogene, a novel gene and 2
              CpG islands, complete sequence
          Length = 123693

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     ttgggttgcccaaggggaa 46
              |||||||||||||||||||
Sbjct: 116527 ttgggttgcccaaggggaa 116509
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>gb|AY142108.1| Gallus gallus tankyrase 1 mRNA, complete cds
          Length = 3804

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 38  caaggggaagatagatgtg 56
           |||||||||||||||||||
Sbjct: 690 caaggggaagatagatgtg 708
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>emb|BX842652.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 7/11
          Length = 346148

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 74     aggggcgaagctgttcctg 92
              |||||||||||||||||||
Sbjct: 119367 aggggcgaagctgttcctg 119349
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>ref|NM_007378.1| Mus musculus ATP-binding cassette, sub-family A (ABC1), member 4
            (Abca4), mRNA
          Length = 7268

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 48   atagatgtggtggagaaga 66
            |||||||||||||||||||
Sbjct: 1810 atagatgtggtggagaaga 1828
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>emb|BX569691.1| Synechococcus sp. WH8102 complete genome; segment 3/7
          Length = 347365

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 55     tggtggagaagatccgacc 73
              |||||||||||||||||||
Sbjct: 295623 tggtggagaagatccgacc 295605
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>gb|AC022746.10| Homo sapiens chromosome 10, clone RP11-567F2, complete sequence
          Length = 168998

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 91    tgtatgactttgatctgaa 109
             |||||||||||||||||||
Sbjct: 50355 tgtatgactttgatctgaa 50337
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>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete
              sequence
          Length = 1632307

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 105    ctgaagcttctctatgggg 123
              |||||||||||||||||||
Sbjct: 119778 ctgaagcttctctatgggg 119796
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>emb|AJ784316.1| Canis familiaris mRNA for retinal-specific ATP-binding cassette
            transporter (abcr gene)
          Length = 7259

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 48   atagatgtggtggagaaga 66
            |||||||||||||||||||
Sbjct: 1771 atagatgtggtggagaaga 1789
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>emb|AJ639834.1| Canis familiaris partial abca4 gene for RIM ABC transporter, exons
           12-13
          Length = 1013

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 48  atagatgtggtggagaaga 66
           |||||||||||||||||||
Sbjct: 169 atagatgtggtggagaaga 187
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>gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0012F18, from chromosome 3, complete sequence
          Length = 122903

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    ccaaggggaagatagatgt 55
             |||||||||||||||||||
Sbjct: 82040 ccaaggggaagatagatgt 82058
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 56     ggtggagaagatccgaccagggg 78
              |||||||||||||| ||||||||
Sbjct: 126543 ggtggagaagatccaaccagggg 126565
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 52     atgtggtggagaagatccg 70
              |||||||||||||||||||
Sbjct: 487778 atgtggtggagaagatccg 487760
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>ref|NM_080005.2| Drosophila melanogaster Rab-related protein 4 CG3129-RA (Rab-RP4),
           mRNA
          Length = 835

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 50  agatgtggtggagaagatc 68
           |||||||||||||||||||
Sbjct: 625 agatgtggtggagaagatc 643
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>gb|AY075329.1| Drosophila melanogaster GH11193 full length cDNA
          Length = 811

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 50  agatgtggtggagaagatc 68
           |||||||||||||||||||
Sbjct: 583 agatgtggtggagaagatc 601
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>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNAb0012F18, complete sequence
          Length = 122159

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    ccaaggggaagatagatgt 55
             |||||||||||||||||||
Sbjct: 19137 ccaaggggaagatagatgt 19155
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 64       agatccgaccaggggcgaa 82
                |||||||||||||||||||
Sbjct: 27857141 agatccgaccaggggcgaa 27857159



 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 37       ccaaggggaagatagatgt 55
                |||||||||||||||||||
Sbjct: 14202724 ccaaggggaagatagatgt 14202742
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>ref|NM_204340.1| Gallus gallus tankyrase, TRF1-interacting ankyrin-related
           ADP-ribose polymerase (TNKS), mRNA
          Length = 3804

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 38  caaggggaagatagatgtg 56
           |||||||||||||||||||
Sbjct: 690 caaggggaagatagatgtg 708
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>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete
             sequence
          Length = 119329

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 64    agatccgaccaggggcgaa 82
             |||||||||||||||||||
Sbjct: 48076 agatccgaccaggggcgaa 48058
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>dbj|AK065282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M02, full
            insert sequence
          Length = 2733

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 37   ccaaggggaagatagatgt 55
            |||||||||||||||||||
Sbjct: 1750 ccaaggggaagatagatgt 1768
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>gb|AC101764.11| Mus musculus chromosome 3, clone RP24-471B15, complete sequence
          Length = 151388

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 48    atagatgtggtggagaaga 66
             |||||||||||||||||||
Sbjct: 25385 atagatgtggtggagaaga 25403
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>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 49     tagatgtggtggagaagat 67
              |||||||||||||||||||
Sbjct: 277750 tagatgtggtggagaagat 277732
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>gb|AF000149.1|MMAF000149 Mus musculus ATP-binding cassette transporter (ABCR) mRNA, complete
            cds
          Length = 7268

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 48   atagatgtggtggagaaga 66
            |||||||||||||||||||
Sbjct: 1810 atagatgtggtggagaaga 1828
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>gb|BC057853.1| Mus musculus ATP-binding cassette, sub-family A (ABC1), member 4,
            mRNA (cDNA clone MGC:62660 IMAGE:6492139), complete cds
          Length = 7319

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 48   atagatgtggtggagaaga 66
            |||||||||||||||||||
Sbjct: 1810 atagatgtggtggagaaga 1828
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>dbj|D84317.1| Drosophila melanogaster mRNA for rab-related protein 4, complete
           cds
          Length = 807

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 50  agatgtggtggagaagatc 68
           |||||||||||||||||||
Sbjct: 597 agatgtggtggagaagatc 615


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,403,710
Number of Sequences: 3902068
Number of extensions: 1403710
Number of successful extensions: 89352
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88998
Number of HSP's gapped (non-prelim): 354
length of query: 183
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 161
effective length of database: 17,147,199,772
effective search space: 2760699163292
effective search space used: 2760699163292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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