ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags32d22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STS3_ARATH (P92976) Strictosidine synthase 3 precursor (EC 4.3.3... 40 0.001
2STS1_ARATH (P94111) Strictosidine synthase 1 precursor (EC 4.3.3... 39 0.003
3STSY_CATRO (P18417) Strictosidine synthase precursor (EC 4.3.3.2) 37 0.015
4APMAP_MOUSE (Q9D7N9) Adipocyte plasma membrane-associated protei... 29 4.2
5APMAP_HUMAN (Q9HDC9) Adipocyte plasma membrane-associated protei... 28 7.1
6YPFJ_ECOLI (P64429) Hypothetical protein ypfJ 28 9.3
7YPFJ_ECOL6 (P64430) Hypothetical protein ypfJ 28 9.3
8YPFJ_ECO57 (P64431) Hypothetical protein ypfJ 28 9.3

>STS3_ARATH (P92976) Strictosidine synthase 3 precursor (EC 4.3.3.2) (SS-3)|
          Length = 329

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = +1

Query: 4   SNGVSLSKDGSFFVFCEGSRGRLSRYWLKGEKAGTVDLF 120
           S G ++S DGSF +  + ++  + RYW+KG KAGT + F
Sbjct: 206 SAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAGTSEDF 244



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>STS1_ARATH (P94111) Strictosidine synthase 1 precursor (EC 4.3.3.2) (SS-1)|
          Length = 335

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +1

Query: 4   SNGVSLSKDGSFFVFCEGSRGRLSRYWLKGEKAGTVDLF 120
           S G ++S DGSF +  + ++  + RYW+KG KAG+ + F
Sbjct: 204 SAGCAVSSDGSFVLVSQFTKSNIKRYWIKGPKAGSSEDF 242



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>STSY_CATRO (P18417) Strictosidine synthase precursor (EC 4.3.3.2)|
          Length = 352

 Score = 37.0 bits (84), Expect = 0.015
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 1   ISNGVSLSKDGSFFVFCEGSRGRLSRYWLKGEKAGTVD 114
           +  G  +S DGSF V  E    R+ +YWL+G K G+ +
Sbjct: 214 VPGGAEISADGSFVVVAEFLSNRIVKYWLEGPKKGSAE 251



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>APMAP_MOUSE (Q9D7N9) Adipocyte plasma membrane-associated protein (Protein|
           DD16)
          Length = 415

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 7   NGVSLSKDGSFFVFCEGSRGRLSRYWLKGEKAGTVDLF 120
           NGV LS +  F +  E +  R+ R ++ G   G  D+F
Sbjct: 259 NGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMF 296



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>APMAP_HUMAN (Q9HDC9) Adipocyte plasma membrane-associated protein (BSCv|
           protein)
          Length = 416

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 7   NGVSLSKDGSFFVFCEGSRGRLSRYWLKGEKAGTVDLF 120
           NGV LS    F +  E +  R+ R ++ G   G  DLF
Sbjct: 260 NGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLF 297



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>YPFJ_ECOLI (P64429) Hypothetical protein ypfJ|
          Length = 287

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -1

Query: 114 IDGSCLLTFQPVSAQPSTRSFTEDEE 37
           +D + L+T QPVS Q STRS + +E+
Sbjct: 52  VDLTGLMTGQPVSQQQSTRSISPNED 77



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>YPFJ_ECOL6 (P64430) Hypothetical protein ypfJ|
          Length = 287

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -1

Query: 114 IDGSCLLTFQPVSAQPSTRSFTEDEE 37
           +D + L+T QPVS Q STRS + +E+
Sbjct: 52  VDLTGLMTGQPVSQQQSTRSISPNED 77



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>YPFJ_ECO57 (P64431) Hypothetical protein ypfJ|
          Length = 287

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -1

Query: 114 IDGSCLLTFQPVSAQPSTRSFTEDEE 37
           +D + L+T QPVS Q STRS + +E+
Sbjct: 52  VDLTGLMTGQPVSQQQSTRSISPNED 77


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,657,515
Number of Sequences: 219361
Number of extensions: 205736
Number of successful extensions: 730
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 80,573,946
effective HSP length: 15
effective length of database: 77,283,531
effective search space used: 1854804744
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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