Clone Information

BLAST Search Result

Clone Name	bags31o21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL6_MESCR (P34091) 60S ribosomal protein L6 (YL16-like)	184	1e-51
2	RL6B_YEAST (P05739) 60S ribosomal protein L6-B (L17) (YL16) (RP18)	137	1e-32
3	RL6A_YEAST (Q02326) 60S ribosomal protein L6-A (L17) (YL16) (RP18)	137	2e-32
4	RL6_PIG (Q2YGT9) 60S ribosomal protein L6	134	1e-31
5	RL6_BOVIN (Q58DQ3) 60S ribosomal protein L6	132	4e-31
6	RL6_CHILA (Q6QMZ4) 60S ribosomal protein L6	132	5e-31
7	RL6_HUMAN (Q02878) 60S ribosomal protein L6 (TAX-responsive enha...	131	1e-30
8	RL6_MOUSE (P47911) 60S ribosomal protein L6 (TAX-responsive enha...	130	1e-30
9	RL6_RAT (P21533) 60S ribosomal protein L6 (Neoplasm-related prot...	129	6e-30
10	RL6_CAEEL (P47991) 60S ribosomal protein L6	117	2e-26
11	RL6_SCHPO (P79071) 60S ribosomal protein L6	115	6e-26
12	RL14E_SULAC (Q4JAJ9) 50S ribosomal protein L14e	47	4e-05
13	RL14E_SULSO (Q980C1) 50S ribosomal protein L14e	45	1e-04
14	RL14E_SULTO (Q975L7) 50S ribosomal protein L14e	43	5e-04
15	RL14E_PYRAE (Q8ZYB4) 50S ribosomal protein L14e	42	0.001
16	RL14E_METKA (Q8TX43) 50S ribosomal protein L14e	39	0.006
17	RL14E_AERPE (Q9YDD7) 50S ribosomal protein L14e	39	0.008
18	RL6_ENTHI (O15595) 60S ribosomal protein L6 (Fragment)	38	0.013
19	RL14E_PYRFU (Q8U2L5) 50S ribosomal protein L14e	35	0.11
20	RL14E_PYRHO (P59937) 50S ribosomal protein L14e	33	0.42
21	RL14E_PYRAB (Q9UZJ5) 50S ribosomal protein L14e	33	0.42
22	RL27_YEAST (P38706) 60S ribosomal protein L27	32	0.72
23	RL27_RAT (P61354) 60S ribosomal protein L27	32	0.72
24	RL27_MOUSE (P61358) 60S ribosomal protein L27	32	0.72
25	RL27_HUMAN (P61353) 60S ribosomal protein L27	32	0.72
26	RL27_CHICK (P61355) 60S ribosomal protein L27	32	0.72
27	RL27_CERNI (P61357) 60S ribosomal protein L27	32	0.72
28	RL27_CANFA (Q9XSU7) 60S ribosomal protein L27	32	0.72
29	RL27_BOVIN (P61356) 60S ribosomal protein L27	32	0.72
30	RL27_HIPCM (P61359) 60S ribosomal protein L27	32	0.94
31	RL27_BRARE (Q7ZV82) 60S ribosomal protein L27	32	0.94
32	RL17_ICTPU (Q90YU1) 60S ribosomal protein L27	32	0.94
33	RL14E_PYRKO (Q5JJE4) 50S ribosomal protein L14e	31	1.6
34	RL27_CAEEL (P91914) 60S ribosomal protein L27	30	2.7
35	NAR4_HUMAN (Q93070) Ecto-ADP-ribosyltransferase 4 precursor (EC ...	30	2.7
36	CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-...	30	3.6
37	SLAP2_CLOTM (Q06853) Cell surface glycoprotein 2 precursor (S-la...	30	3.6
38	RL27_PEA (Q05462) 60S ribosomal protein L27	30	3.6
39	ELL_MOUSE (O08856) RNA polymerase II elongation factor ELL (Elev...	30	3.6
40	NAMA_LISMO (Q8Y4H1) NADPH dehydrogenase (EC 1.6.99.1) (Xenobioti...	30	4.7
41	YLD2_CAEEL (Q03567) Hypothetical protein C38C10.2 in chromosome III	30	4.7
42	RL27A_SCHPO (O14388) 60S ribosomal protein L27-A	29	6.1
43	NAR4_PANTR (Q95NE0) Ecto-ADP-ribosyltransferase 4 precursor (EC ...	29	6.1
44	SYT_NITEU (Q82VV1) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon...	29	7.9
45	V51K_BPL79 (P24125) 51.5 kDa protein	29	7.9
46	NAMA_LISMF (Q71WV6) NADPH dehydrogenase (EC 1.6.99.1) (Xenobioti...	29	7.9
47	GPSM3_HUMAN (Q9Y4H4) G-protein signaling modulator 3 (Activator ...	29	7.9

>RL6_MESCR (P34091) 60S ribosomal protein L6 (YL16-like)|
          Length = 234

 Score =  184 bits (466), Expect(2) = 1e-51
 Identities = 90/118 (76%), Positives = 102/118 (86%)
 Frame = +2

Query: 131 YPADDVKPRTASTRKPKPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPF 310
           YPADDVK    + RKPKPTKLR++ITPGTVLI+LAGR+ GKRVVFLKQL SGLLL+TGPF
Sbjct: 66  YPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPF 125

Query: 311 KINGVPVRRVNQAYVIATSTKVDISGVKVEKFDDKYFARDKKARAKKTEGELFETEKE 484
           K+NGVP+RRVNQAYVIATSTKVDISGV VEKFDDKYF +  + + KK EGE FE EK+
Sbjct: 126 KVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKK 183



 Score = 38.9 bits (89), Expect(2) = 1e-51
 Identities = 18/29 (62%), Positives = 20/29 (68%)
 Frame = +1

Query: 7   GIKRASRSHSYHRRGLWAIKAKXRRSLPK 93
           GI + SRS  YH+RGLWAIKAK     PK
Sbjct: 20  GIGKYSRSKMYHKRGLWAIKAKNGGVFPK 48

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>RL6B_YEAST (P05739) 60S ribosomal protein L6-B (L17) (YL16) (RP18)|
          Length = 175

 Score =  137 bits (346), Expect = 1e-32
 Identities = 65/117 (55%), Positives = 88/117 (75%)
 Frame = +2

Query: 131 YPADDVKPRTASTRKPKPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPF 310
           YP++DV     + +  +P KLR+++ PGTVLILLAGR+ GKRVV+LK L+   LL+TGPF
Sbjct: 9   YPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPF 68

Query: 311 KINGVPVRRVNQAYVIATSTKVDISGVKVEKFDDKYFARDKKARAKKTEGELFETEK 481
           K+NGVP+RRVN  YVIATSTKV + GV VEKF+ +YFA++K  + +K E  LF  ++
Sbjct: 69  KVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQ 125

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>RL6A_YEAST (Q02326) 60S ribosomal protein L6-A (L17) (YL16) (RP18)|
          Length = 175

 Score =  137 bits (344), Expect = 2e-32
 Identities = 65/117 (55%), Positives = 88/117 (75%)
 Frame = +2

Query: 131 YPADDVKPRTASTRKPKPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPF 310
           YP++DV     + +  +P KLR+++ PGTVLILLAGR+ GKRVV+LK L+   LLI+GPF
Sbjct: 9   YPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPF 68

Query: 311 KINGVPVRRVNQAYVIATSTKVDISGVKVEKFDDKYFARDKKARAKKTEGELFETEK 481
           K+NGVP+RRVN  YVIATSTKV + GV VEKF+ +YFA++K  + +K E  LF  ++
Sbjct: 69  KVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQ 125

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>RL6_PIG (Q2YGT9) 60S ribosomal protein L6|
          Length = 283

 Score =  134 bits (337), Expect = 1e-31
 Identities = 70/124 (56%), Positives = 90/124 (72%), Gaps = 6/124 (4%)
 Frame = +2

Query: 131 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 295
           YP +DV PR   +   KP      KLR++ITPGT+LI+L GR+ GKRV+FLKQL SGLLL
Sbjct: 111 YPTEDV-PRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLL 169

Query: 296 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKV-EKFDDKYFARDKKARAKKTEGELFE 472
           +TGP  +N VP+RR +Q +VIATSTK+DISGVK+ E   D YF + K  + +  EGE+F+
Sbjct: 170 VTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFD 229

Query: 473 TEKE 484
           TEKE
Sbjct: 230 TEKE 233

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>RL6_BOVIN (Q58DQ3) 60S ribosomal protein L6|
          Length = 286

 Score =  132 bits (333), Expect = 4e-31
 Identities = 70/124 (56%), Positives = 90/124 (72%), Gaps = 6/124 (4%)
 Frame = +2

Query: 131 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 295
           YP +DV PR   +   KP      KLR++ITPGT+LI+L GR+ GKRVVFLKQL SGLLL
Sbjct: 114 YPTEDV-PRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLL 172

Query: 296 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKV-EKFDDKYFARDKKARAKKTEGELFE 472
           +TGP  +N VP+RR +Q +VIATSTK+DISGVK+ E   D YF + K  + +  EGE+F+
Sbjct: 173 VTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFD 232

Query: 473 TEKE 484
           TE+E
Sbjct: 233 TERE 236

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>RL6_CHILA (Q6QMZ4) 60S ribosomal protein L6|
          Length = 287

 Score =  132 bits (332), Expect = 5e-31
 Identities = 71/124 (57%), Positives = 89/124 (71%), Gaps = 6/124 (4%)
 Frame = +2

Query: 131 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 295
           YP +DV PR   +   KP      KLR++ITPGTVLI+L GR+ GKRVVFLKQL SGLLL
Sbjct: 115 YPTEDV-PRKLLSHGKKPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLL 173

Query: 296 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKVEK-FDDKYFARDKKARAKKTEGELFE 472
           +TGP  +N VP+RR +Q +VIATSTK+DIS VK+ K   D YF + K  + +  EGE+F+
Sbjct: 174 VTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFD 233

Query: 473 TEKE 484
           TEKE
Sbjct: 234 TEKE 237

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>RL6_HUMAN (Q02878) 60S ribosomal protein L6 (TAX-responsive enhancer|
           element-binding protein 107) (TAXREB107)
           (Neoplasm-related protein C140)
          Length = 287

 Score =  131 bits (329), Expect = 1e-30
 Identities = 70/124 (56%), Positives = 89/124 (71%), Gaps = 6/124 (4%)
 Frame = +2

Query: 131 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 295
           YP +DV PR   +   KP      KLR++ITPGT+LI+L GR+ GKRVVFLKQL SGLLL
Sbjct: 115 YPTEDV-PRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLL 173

Query: 296 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKVEK-FDDKYFARDKKARAKKTEGELFE 472
           +TGP  +N VP+RR +Q +VIATSTK+DIS VK+ K   D YF + K  + +  EGE+F+
Sbjct: 174 VTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFD 233

Query: 473 TEKE 484
           TEKE
Sbjct: 234 TEKE 237

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>RL6_MOUSE (P47911) 60S ribosomal protein L6 (TAX-responsive enhancer|
           element-binding protein 107) (TAXREB107)
          Length = 295

 Score =  130 bits (328), Expect = 1e-30
 Identities = 72/124 (58%), Positives = 89/124 (71%), Gaps = 6/124 (4%)
 Frame = +2

Query: 131 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 295
           YP +DV PR   +   KP      +LRS+ITPGTVLI+L GR+ GKRVVFLKQL SGLLL
Sbjct: 123 YPTEDV-PRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLL 181

Query: 296 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKVEK-FDDKYFARDKKARAKKTEGELFE 472
           +TGP  IN VP+RR +Q +VIATSTKVDIS VK+ K   D YF + +  + +  EGE+F+
Sbjct: 182 VTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFD 241

Query: 473 TEKE 484
           TEKE
Sbjct: 242 TEKE 245

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>RL6_RAT (P21533) 60S ribosomal protein L6 (Neoplasm-related protein C140)|
          Length = 297

 Score =  129 bits (323), Expect = 6e-30
 Identities = 71/124 (57%), Positives = 88/124 (70%), Gaps = 6/124 (4%)
 Frame = +2

Query: 131 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 295
           YP +DV PR   +   KP      +LRS+ITPGTVLI+L GR+ GKRVVFLKQL SGLLL
Sbjct: 125 YPTEDV-PRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLL 183

Query: 296 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKVEK-FDDKYFARDKKARAKKTEGELFE 472
           +TGP  +N VP+RR +Q +VIATSTKVDIS VK+ K   D YF +    + +  EGE+F+
Sbjct: 184 VTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFD 243

Query: 473 TEKE 484
           TEKE
Sbjct: 244 TEKE 247

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>RL6_CAEEL (P47991) 60S ribosomal protein L6|
          Length = 217

 Score =  117 bits (293), Expect = 2e-26
 Identities = 64/103 (62%), Positives = 81/103 (78%), Gaps = 2/103 (1%)
 Frame = +2

Query: 179 KPTKLRSTITPGTVLILLAGRYMGKRVVFLKQL-KSGLLLITGPFKINGVPVRRVNQAYV 355
           K   LR T+TPGTVLI+LAGR+ GKRVVFLKQL +SGLLL+TGP KING P+RR+ QA+V
Sbjct: 63  KTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFV 122

Query: 356 IATSTKVDISGVKV-EKFDDKYFARDKKARAKKTEGELFETEK 481
           IATS KV++SGVK+ E  +D+YF R  K+ A+KT   +F + K
Sbjct: 123 IATSLKVNVSGVKIPEHINDEYFKR--KSTAQKTGKNIFASGK 163

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>RL6_SCHPO (P79071) 60S ribosomal protein L6|
          Length = 194

 Score =  115 bits (288), Expect = 6e-26
 Identities = 63/123 (51%), Positives = 83/123 (67%), Gaps = 1/123 (0%)
 Frame = +2

Query: 131 YPADDVKPRTASTRKPKPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPF 310
           YPA        + +  +PTKLR+++ PGTV ILLAGR+ GKRVV L QL+   L++TGP+
Sbjct: 27  YPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED-TLVVTGPY 85

Query: 311 KINGVPVRRVNQAYVIATST-KVDISGVKVEKFDDKYFARDKKARAKKTEGELFETEKEA 487
           K+NGVP+RRVN  YVIATS  K+D+SGV VEKF   YFA+ K++   K +   F   + A
Sbjct: 86  KVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQKRSGPVKKDEAFF--AENA 143

Query: 488 TKN 496
            KN
Sbjct: 144 PKN 146

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>RL14E_SULAC (Q4JAJ9) 50S ribosomal protein L14e|
          Length = 96

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 23/58 (39%), Positives = 35/58 (60%)
 Frame = +2

Query: 212 GTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDIS 385
           G + +   GR  GK+ V +  + S  +L+TGP +INGV  RRVN  ++  T  KV+I+
Sbjct: 7   GRICVKTRGREAGKKCVIVDIIDSNFVLVTGPKEINGVKRRRVNILHIEPTDKKVEIN 64

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>RL14E_SULSO (Q980C1) 50S ribosomal protein L14e|
          Length = 96

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 30/97 (30%), Positives = 45/97 (46%)
 Frame = +2

Query: 203 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 382
           I  G + + + GR  G + V +  +    +L+TGP  I GV  RRVN  ++  T  K+DI
Sbjct: 4   IEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDI 63

Query: 383 SGVKVEKFDDKYFARDKKARAKKTEGELFETEKEATK 493
                     +  A D++ + K  E  L E  KE  K
Sbjct: 64  ----------QKGASDEEVKKKLEESNLTEYMKEKIK 90

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>RL14E_SULTO (Q975L7) 50S ribosomal protein L14e|
          Length = 96

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 28/94 (29%), Positives = 43/94 (45%)
 Frame = +2

Query: 212 GTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDISGV 391
           G + +   GR  GK+ V +  +    +L+TGP  +N V  RRVN  ++  T  K+DI+  
Sbjct: 7   GRICVKTRGREAGKKCVIVDIIDENFVLVTGPKDVNKVKRRRVNILHLEPTDKKIDIN-- 64

Query: 392 KVEKFDDKYFARDKKARAKKTEGELFETEKEATK 493
                     A D + + K  E  L E  K+  K
Sbjct: 65  --------KGASDDEVKKKLEEAGLIEFMKQDVK 90

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>RL14E_PYRAE (Q8ZYB4) 50S ribosomal protein L14e|
          Length = 103

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 21/57 (36%), Positives = 33/57 (57%)
 Frame = +2

Query: 212 GTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 382
           G V++ + GR  G++ V +  +    ++ITGP  I GV  RRVN  ++  T  K+DI
Sbjct: 8   GRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64

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>RL14E_METKA (Q8TX43) 50S ribosomal protein L14e|
          Length = 94

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 22/60 (36%), Positives = 31/60 (51%)
 Frame = +2

Query: 203 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 382
           I  G + +  AGR  GK  V +  +    ++ITGP  + GV  RR N  ++  T  KVDI
Sbjct: 5   IEVGRICVKTAGREAGKYCVVVDIVDENFVIITGPKDVTGVKRRRCNIKHLEPTPEKVDI 64

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>RL14E_AERPE (Q9YDD7) 50S ribosomal protein L14e|
          Length = 100

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +2

Query: 191 LRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATST 370
           +   +  G + +   GR  G++ V +  +    +L+TGP  + GV  RRVN  ++     
Sbjct: 1   MAKVVEVGRICVKTRGREAGRKCVIVDIIDENFVLVTGPKSLTGVRRRRVNIDHIEILDK 60

Query: 371 KVDI 382
           KVDI
Sbjct: 61  KVDI 64

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>RL6_ENTHI (O15595) 60S ribosomal protein L6 (Fragment)|
          Length = 92

 Score = 38.1 bits (87), Expect = 0.013
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 14/60 (23%)
 Frame = +2

Query: 131 YPADDV---KPRTASTRK-------PKP----TKLRSTITPGTVLILLAGRYMGKRVVFL 268
           YP DD+   + +   TRK        KP     KLR +I PG +LI++ G+Y GK+VV L
Sbjct: 20  YPTDDMIQEQKKKLRTRKGAKITALDKPGWNLEKLRKSIVPGAILIIVGGKYAGKKVVSL 79

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>RL14E_PYRFU (Q8U2L5) 50S ribosomal protein L14e|
          Length = 83

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 19/60 (31%), Positives = 34/60 (56%)
 Frame = +2

Query: 203 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 382
           I  G + +++AGR  G++VV +  +    +L+TG   +N V  RR+N  ++     K+DI
Sbjct: 4   IDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHIEPLPQKIDI 62

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>RL14E_PYRHO (P59937) 50S ribosomal protein L14e|
          Length = 82

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +2

Query: 203 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 382
           I  G + +++AGR  G++ V +  +    +L+TG   +N V  RR+N  ++     K+DI
Sbjct: 4   IDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGA-GLNKVKRRRMNIKHLEPLPEKIDI 62

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>RL14E_PYRAB (Q9UZJ5) 50S ribosomal protein L14e|
          Length = 82

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +2

Query: 203 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 382
           I  G + +++AGR  G++ V +  +    +L+TG   +N V  RR+N  ++     K+DI
Sbjct: 4   IDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGA-GLNKVKRRRMNIKHLEPLPEKIDI 62

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>RL27_YEAST (P38706) 60S ribosomal protein L27|
          Length = 136

 Score = 32.3 bits (72), Expect = 0.72
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 25/120 (20%)
 Frame = +2

Query: 212 GTVLILLAGRYMGKRVVFLKQLKSGL-------LLITG----PFKI---NGVP------- 328
           G V +++ GRY GK+VV +K    G         L+ G    P K+   +G         
Sbjct: 8   GKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTK 67

Query: 329 ----VRRVNQAYVIATSTKVDISGVKVEKFDDKYFARDKKARAKKTEGELFETEKEATKN 496
               ++ VN  +++ T   +D+   K     + +    ++  AKK   + FE   +A KN
Sbjct: 68  IKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKN 127

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>RL27_RAT (P61354) 60S ribosomal protein L27|
          Length = 135

 Score = 32.3 bits (72), Expect = 0.72
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 209 PGTVLILLAGRYMGKRVVFLKQLKSG 286
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVLVLAGRYSGRKAVIVKNIDDG 31

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>RL27_MOUSE (P61358) 60S ribosomal protein L27|
          Length = 135

 Score = 32.3 bits (72), Expect = 0.72
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 209 PGTVLILLAGRYMGKRVVFLKQLKSG 286
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVLVLAGRYSGRKAVIVKNIDDG 31

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>RL27_HUMAN (P61353) 60S ribosomal protein L27|
          Length = 135

 Score = 32.3 bits (72), Expect = 0.72
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 209 PGTVLILLAGRYMGKRVVFLKQLKSG 286
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVLVLAGRYSGRKAVIVKNIDDG 31

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>RL27_CHICK (P61355) 60S ribosomal protein L27|
          Length = 135

 Score = 32.3 bits (72), Expect = 0.72
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 209 PGTVLILLAGRYMGKRVVFLKQLKSG 286
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVLVLAGRYSGRKAVIVKNIDDG 31

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>RL27_CERNI (P61357) 60S ribosomal protein L27|
          Length = 135

 Score = 32.3 bits (72), Expect = 0.72
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 209 PGTVLILLAGRYMGKRVVFLKQLKSG 286
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVLVLAGRYSGRKAVIVKNIDDG 31

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>RL27_CANFA (Q9XSU7) 60S ribosomal protein L27|
          Length = 135

 Score = 32.3 bits (72), Expect = 0.72
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 209 PGTVLILLAGRYMGKRVVFLKQLKSG 286
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVLVLAGRYSGRKAVIVKNIDDG 31

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>RL27_BOVIN (P61356) 60S ribosomal protein L27|
          Length = 135

 Score = 32.3 bits (72), Expect = 0.72
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 209 PGTVLILLAGRYMGKRVVFLKQLKSG 286
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVLVLAGRYSGRKAVIVKNIDDG 31

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>RL27_HIPCM (P61359) 60S ribosomal protein L27|
          Length = 135

 Score = 32.0 bits (71), Expect = 0.94
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 209 PGTVLILLAGRYMGKRVVFLKQLKSG 286
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVMVLAGRYAGRKAVIVKNIDDG 31

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>RL27_BRARE (Q7ZV82) 60S ribosomal protein L27|
          Length = 135

 Score = 32.0 bits (71), Expect = 0.94
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 209 PGTVLILLAGRYMGKRVVFLKQLKSG 286
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVMVLAGRYAGRKAVIVKNIDDG 31

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>RL17_ICTPU (Q90YU1) 60S ribosomal protein L27|
          Length = 135

 Score = 32.0 bits (71), Expect = 0.94
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 209 PGTVLILLAGRYMGKRVVFLKQLKSG 286
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVMVLAGRYAGRKAVIVKNIDDG 31

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>RL14E_PYRKO (Q5JJE4) 50S ribosomal protein L14e|
          Length = 83

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +2

Query: 203 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 382
           I  G + +++AGR  G++VV    +    +L+TG   +N V  RR+N  ++     +V+I
Sbjct: 4   IEVGRIAVVIAGRRAGQKVVVADIIDKNFVLVTGA-GLNKVKRRRMNVKHLEPLPERVNI 62

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>RL27_CAEEL (P91914) 60S ribosomal protein L27|
          Length = 136

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 209 PGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKI 316
           PG V+++L G+Y G++ V +KQ   G+   T P  I
Sbjct: 7   PGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAI 42

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>NAR4_HUMAN (Q93070) Ecto-ADP-ribosyltransferase 4 precursor (EC 2.4.2.31)|
           (NAD(P)(+)--arginine ADP-ribosyltransferase 4)
           (Mono(ADP-ribosyl)transferase 4) (Dombrock blood group
           carrier molecule) (CD297 antigen)
          Length = 314

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 29/106 (27%), Positives = 44/106 (41%)
 Frame = +2

Query: 179 KPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVI 358
           K   L +T+ P T+ I L G            L   LLL++G        ++R  +   +
Sbjct: 9   KKILLPTTVPPATMRIWLLGG-----------LLPFLLLLSG--------LQRPTEGSEV 49

Query: 359 ATSTKVDISGVKVEKFDDKYFARDKKARAKKTEGELFETEKEATKN 496
           A     D +      FDD+Y    K+   K T+G+ F  + EA KN
Sbjct: 50  AIKIDFDFAP---GSFDDQYQGCSKQVMEKLTQGDYFTKDIEAQKN 92

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>CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)|
           (Chromatin assembly factor I p150 subunit) (CAF-I 150
           kDa subunit) (CAF-Ip150)
          Length = 911

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 263 FLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVD 379
           FL  LKS L L +GP ++ G     +N+  VI  S+KVD
Sbjct: 487 FLSDLKSRLPLRSGPTRVCGHDTDIMNRDVVIVESSKVD 525

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>SLAP2_CLOTM (Q06853) Cell surface glycoprotein 2 precursor (S-layer protein 2)|
          Length = 688

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
 Frame = +2

Query: 8   ASSARRGRTPTTAAGSGPSRPXNGGXXXXXXXXXXXXXXXXYPADDVKPRTASTRKPKPT 187
           A +  +  TP+   G G   P  GG                 P    KP   +T+KP+PT
Sbjct: 412 AVTPTQSATPSDPGGGGGGLPGGGGGAVNPSASPT-------PTPTSKPTPTATKKPEPT 464

Query: 188 KLR--STITPGTV 220
           ++       PGTV
Sbjct: 465 EIEEPEPEIPGTV 477

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>RL27_PEA (Q05462) 60S ribosomal protein L27|
          Length = 135

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 29/122 (23%)
 Frame = +2

Query: 203 ITPGTVLILLAGRYMGKRVVFLKQLKSGL-------LLITGPFKINGVPVRR-------- 337
           + P   +ILL GRY GK+ V +K    G         L+ G  K     +++        
Sbjct: 5   LKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAK 64

Query: 338 ----------VNQAYVIATSTKVDISGVKVEKFDDKYFARDKKARA----KKTEGELFET 475
                     VN  +++ T   +D+  +K     D   ++DKK  A    KK+  E F+T
Sbjct: 65  KSRVKAFVKLVNYQHLMPTRYTLDVD-LKDAVVPDVLQSKDKKVTALKETKKSLEERFKT 123

Query: 476 EK 481
            K
Sbjct: 124 GK 125

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>ELL_MOUSE (O08856) RNA polymerase II elongation factor ELL (Eleven-nineteen|
           lysine-rich leukemia protein)
          Length = 602

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
 Frame = +2

Query: 149 KPRTASTRKPKPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVP 328
           K R +  +  + T+ RS I     +I   GRYMGK+V F K           P   + VP
Sbjct: 129 KARQSMAQAEEETRSRSAI-----VIKAGGRYMGKKVQFRK---------PAPGAADAVP 174

Query: 329 VRR----VNQAYVIATSTKVDISGVKVEKFDDK 415
            R+    +N A  I  S+    S V    F D+
Sbjct: 175 SRKRATPINLASAIRKSSGSGASSVVQRPFRDR 207

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>NAMA_LISMO (Q8Y4H1) NADPH dehydrogenase (EC 1.6.99.1) (Xenobiotic reductase)|
          Length = 338

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 23/84 (27%), Positives = 39/84 (46%)
 Frame = +2

Query: 242 YMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDISGVKVEKFDDKYF 421
           + G +V F  +++ G  + TG   +    + R  QA  I  + + D+  V  E   + YF
Sbjct: 260 FPGYQVPFADEIRRGAGIATGALGL----ITRGEQAEEILCNERADLIIVGRELLRNPYF 315

Query: 422 ARDKKARAKKTEGELFETEKEATK 493
           A+D    A K  GE  E  K+ ++
Sbjct: 316 AKD----AAKQLGETIEAPKQYSR 335

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>YLD2_CAEEL (Q03567) Hypothetical protein C38C10.2 in chromosome III|
          Length = 493

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +2

Query: 230 LAGRYMGKRVVFLKQLKSGLLLITGP 307
           LA RY GKRVVF+  L S LL +  P
Sbjct: 104 LASRYGGKRVVFVTILGSALLTLLNP 129

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>RL27A_SCHPO (O14388) 60S ribosomal protein L27-A|
          Length = 136

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 25/123 (20%)
 Frame = +2

Query: 203 ITPGTVLILLAGRYMGKRVVFLKQLKSGL-------LLITG----PFKINGVP------- 328
           + PG V ++  GR+ GK+VV L+ +  G         ++ G    P K+           
Sbjct: 5   LKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAR 64

Query: 329 -------VRRVNQAYVIATSTKVDISGVKVEKFDDKYFARDKKARAKKTEGELFETEKEA 487
                  ++ VN  +++ T   +++  +K     D +    +++ A+KT  + FE + ++
Sbjct: 65  RSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQS 124

Query: 488 TKN 496
            K+
Sbjct: 125 GKS 127

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>NAR4_PANTR (Q95NE0) Ecto-ADP-ribosyltransferase 4 precursor (EC 2.4.2.31)|
           (NAD(P)(+)--arginine ADP-ribosyltransferase 4)
           (Mono(ADP-ribosyl)transferase 4) (Dombrock molecule 1)
          Length = 314

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 28/106 (26%), Positives = 44/106 (41%)
 Frame = +2

Query: 179 KPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVI 358
           K   L +T+ P T+ I L G  +             LLL++G        ++R  +   +
Sbjct: 9   KKILLPTTVPPATMRIWLLGGPL-----------PFLLLLSG--------LQRPTEGSEV 49

Query: 359 ATSTKVDISGVKVEKFDDKYFARDKKARAKKTEGELFETEKEATKN 496
           A     D +      FDD+Y    K+   K T+G+ F  + EA KN
Sbjct: 50  AIKIDFDFAP---GSFDDQYQGCSKQVMEKLTQGDYFTKDIEAQKN 92

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>SYT_NITEU (Q82VV1) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 635

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +2

Query: 188 KLRSTITPGTVLILLAGRYMGKRVVFLKQLK--SGLLLITGPFKINGVPVRRVNQAYVIA 361
           ++  +I+PG     LAG+  GK V   +Q++  S L+LIT      G+ + R + A+++A
Sbjct: 22  EVAESISPGLARAALAGKLNGKLVDLSEQIETDSDLVLITDK-DSEGLEIIRHSCAHLLA 80

Query: 362 TSTKVDISGVKV 397
            + K    G +V
Sbjct: 81  HAVKELFPGTQV 92

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>V51K_BPL79 (P24125) 51.5 kDa protein|
          Length = 452

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 248 GKRVVFLKQLKSGLLLITGPFKINGVPVRRV 340
           G RV+FL   K  +  IT  FK++GVP+ +V
Sbjct: 25  GGRVLFLVHRKELIDQITNSFKVHGVPLNQV 55

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>NAMA_LISMF (Q71WV6) NADPH dehydrogenase (EC 1.6.99.1) (Xenobiotic reductase)|
          Length = 338

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 23/84 (27%), Positives = 39/84 (46%)
 Frame = +2

Query: 242 YMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDISGVKVEKFDDKYF 421
           + G +V F  +++ G  + TG   +    + R  QA  I  + + D+  V  E   + YF
Sbjct: 260 FPGYQVPFADEIRRGAGIATGALGL----ITRGEQAEEILCNERADLIIVGRELLRNPYF 315

Query: 422 ARDKKARAKKTEGELFETEKEATK 493
           A+D    A K  GE  E  K+ ++
Sbjct: 316 AKD----AAKQLGETIEGPKQYSR 335

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>GPSM3_HUMAN (Q9Y4H4) G-protein signaling modulator 3 (Activator of G-protein|
           signaling 4) (Protein G18) (G18.1b)
          Length = 160

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 220 ADPARWEVHGEARGVPQAAQVWPAPHHWTFQDQWCPSSPGEPGLCH 357
           A+  + E  GE +G PQ  + WP P+  T   +  P SP  PG  H
Sbjct: 3   AERPQEEEDGE-QGPPQDEEGWPPPNSTTRPWRSAPPSPPPPGTRH 47


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,892,052
Number of Sequences: 219361
Number of extensions: 1096103
Number of successful extensions: 3714
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 3569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3702
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result