ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags31n23 |
|---|---|
| Clone Library Name | barley_pub |
>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 40.0 bits (92), Expect = 0.004 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = +2 Query: 275 ESRATVERPRLNLKPRS---NTVGQSGESAAKERPSLFGGARPREQVLRDRGVD 427 + R +RPRLNLKPRS + S + S+FGGA+P + R+R V+ Sbjct: 324 DDRGPPQRPRLNLKPRSAPKEDDASASTSQSSRAASIFGGAKPVDTAAREREVE 377 Score = 30.0 bits (66), Expect = 4.0 Identities = 29/110 (26%), Positives = 39/110 (35%), Gaps = 15/110 (13%) Frame = +2 Query: 83 PERPKLKLLPRSKPIESPAPSPTYVEEKQ------VLPVPVIASVMQVEVVHEVRQNVIV 244 P+RP+L L PRS P E A + T + PV A +VE + Q + Sbjct: 329 PQRPRLNLKPRSAPKEDDASASTSQSSRAASIFGGAKPVDTAAREREVEERLQKEQEKLQ 388 Query: 245 AKMGVAGADA---------ESRATVERPRLNLKPRSNTVGQSGESAAKER 367 ++ D S T ER R S+ G S S R Sbjct: 389 RQLDEPKLDRRPRERHPSWRSEETQERERSRTGSESSQTGASATSGRNTR 438
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 40.0 bits (92), Expect = 0.004 Identities = 23/46 (50%), Positives = 29/46 (63%) Frame = +2 Query: 275 ESRATVERPRLNLKPRSNTVGQSGESAAKERPSLFGGARPREQVLR 412 E RA +RPRL LKPR TV A ++FGGARPRE+V++ Sbjct: 202 EERA--QRPRLQLKPR--TVATPLNQVANPNSAIFGGARPREEVVQ 243
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 40.0 bits (92), Expect = 0.004 Identities = 23/46 (50%), Positives = 29/46 (63%) Frame = +2 Query: 275 ESRATVERPRLNLKPRSNTVGQSGESAAKERPSLFGGARPREQVLR 412 E RA +RPRL LKPR TV A ++FGGARPRE+V++ Sbjct: 202 EERA--QRPRLQLKPR--TVATPLNQVANPNSAIFGGARPREEVVQ 243
>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 38.9 bits (89), Expect = 0.009 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = +2 Query: 275 ESRATVERPRLNLKPRSNTV---GQSGESAAKERPSLFGGARPREQVLRDRGVD 427 + R +RP+LNLKPRS + S + S+FGGA+P + R+R V+ Sbjct: 324 DDRGPPQRPKLNLKPRSTPEEDDSSASTSQSTRAASIFGGAKPVDTAAREREVE 377
>PDXA_RHILO (Q984S6) 4-hydroxythreonine-4-phosphate dehydrogenase (EC| 1.1.1.262) (4-(phosphohydroxy)-L-threonine dehydrogenase) Length = 342 Score = 38.1 bits (87), Expect = 0.015 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 3/91 (3%) Frame = +2 Query: 179 VPVIASVMQVEVVHEVRQNVIVAKMGVAGADAESRATVERPRLNLKPRSNTVGQSGESAA 358 VPV + EV + +IVA + AD R + RPRL + + G+ G Sbjct: 169 VPVTIHIALAEVPKALTTELIVATARITAADLAGRFGIARPRLAIAGLNPHAGEGGSLGL 228 Query: 359 KERPSLFGGARPREQVLRDRGVDA---LASD 442 ++ + RP +LR G+DA LA+D Sbjct: 229 EDEHIV----RPAVDILRAEGIDAFGPLAAD 255
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 35.8 bits (81), Expect = 0.074 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%) Frame = +2 Query: 281 RATVERPRLNLKPRSN-------TVGQSGESAAKERPSLFGGARPREQVLRDRGVDALAS 439 R + ERPRLNLKPRS+ T + +++K + FGGA+P Sbjct: 236 RESSERPRLNLKPRSSSNVNTEATPSATTTTSSKPKRDPFGGAKP--------------- 280 Query: 440 DLENTSPVGRSKNEFAKVEQ 499 ++NTS + R + + AK Q Sbjct: 281 -VDNTSVLQRVEEKLAKRTQ 299
>PDXA2_BRAJA (Q89MT9) 4-hydroxythreonine-4-phosphate dehydrogenase 2 (EC| 1.1.1.262) (4-(phosphohydroxy)-L-threonine dehydrogenase 2) Length = 345 Score = 33.9 bits (76), Expect = 0.28 Identities = 20/84 (23%), Positives = 41/84 (48%) Frame = +2 Query: 179 VPVIASVMQVEVVHEVRQNVIVAKMGVAGADAESRATVERPRLNLKPRSNTVGQSGESAA 358 VPV V + + ++ +IV+ + + + +SR + RPR+ + + G+ G Sbjct: 177 VPVTIHVSLRDALSQLTSELIVSTVRIVATELKSRFGIARPRIAVSGLNPHAGEDGSLGH 236 Query: 359 KERPSLFGGARPREQVLRDRGVDA 430 +E+ + P + LR+ G+DA Sbjct: 237 EEQTII----APALKTLRNDGIDA 256
>PSMA_METMP (Q6M0L9) Proteasome alpha subunit (EC 3.4.25.1) (Multicatalytic| endopeptidase complex alpha subunit) Length = 259 Score = 32.7 bits (73), Expect = 0.62 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 8/117 (6%) Frame = +2 Query: 188 IASVMQVEVVHEVRQNVIVAKMGVAGADAESRATVERPRLNLKPRSNTVGQSGESAA--- 358 + V +E + ++ +++ A G+ A++R ++R R+ + + G++ A Sbjct: 60 LIDVSSIEKIFQIDDHIVAATSGLV---ADARVLIDRARIEAQMNRVSYGEAITVEALAK 116 Query: 359 -----KERPSLFGGARPREQVLRDRGVDALASDLENTSPVGRSKNEFAKVEQKVEAM 514 K+ + GGARP L G+D ++ L T P G A +E K A+ Sbjct: 117 KICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSG------ALIEYKATAI 167
>COATA_BPPF1 (P25129) Probable coat protein A precursor| Length = 437 Score = 32.7 bits (73), Expect = 0.62 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 4/91 (4%) Frame = -2 Query: 384 PPK--RDGLSFAALSPD*PTVLERGFRF--SRGRSTVALLSASAPATPILATITFWRTS* 217 PPK ++G F A PD P V G + G T S P A+ + S Sbjct: 131 PPKECKEGELFPAKGPDSPVVTSGGRNYVGDGGAPTACYQSCEYGGNPSPASCYLVKGST 190 Query: 216 TTSTCMTLAITGTGRTCFSST*VGDGAGDSI 124 TT C + + GTG++C + + GDS+ Sbjct: 191 TTGFCNYI-LKGTGQSCGADSYTFSQTGDSL 220
>IF2_BACTN (Q8A2A1) Translation initiation factor IF-2| Length = 1040 Score = 32.7 bits (73), Expect = 0.62 Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 9/174 (5%) Frame = +2 Query: 14 KGVEPV--RPASHEGRVGEGKIGEVP--ERPKLKLLPRSKPIESPAPSPTYVEEKQVLPV 181 K VEPV +P E V E + E P E K P+ + +E AP P VE+ V P Sbjct: 132 KKVEPVVEQPVV-EQPVAEKTVVEKPVVESEVKKEEPKVEKVEVIAPKPAPVEQPVVAPK 190 Query: 182 PVI-ASVMQVE--VVHEVRQN--VIVAKMGVAGADAESRATVERPRLNLKPRSNTVGQSG 346 P + ++VE VV EV++ +V V + + T E P + Sbjct: 191 PAVETKPVEVEKVVVEEVKKEEPKVVETAPVKAEERKVERTAEVTATVTTPTEENASKEN 250 Query: 347 ESAAKERPSLFGGARPREQVLRDRGVDALASDLENTSPVGRSKNEFAKVEQKVE 508 E +P L GA+ + G LA+ ++T P +SK E + ++ E Sbjct: 251 EVFKIRQPEL--GAK-----INVIGQIDLAALNQSTRPKKKSKEEKRREREEKE 297
>RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 1002 Score = 32.7 bits (73), Expect = 0.62 Identities = 20/54 (37%), Positives = 23/54 (42%) Frame = +2 Query: 38 ASHEGRVGEGKIGEVPERPKLKLLPRSKPIESPAPSPTYVEEKQVLPVPVIASV 199 AS V I +P P L LP PI P P PT V P+P + SV Sbjct: 179 ASPMNTVPPPPIPPIPAMPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVPSV 232
>PSMA_METKA (Q8TYB7) Proteasome alpha subunit (EC 3.4.25.1) (Multicatalytic| endopeptidase complex alpha subunit) Length = 246 Score = 32.3 bits (72), Expect = 0.81 Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 10/114 (8%) Frame = +2 Query: 155 VEEKQVLPVP--VIASVMQVEVVHEVRQNVIVAKMGVAGADAESRATVERPRLNLKPRSN 328 VEE VL V V + +++ E + +V Q AG A++R VER R+ + Sbjct: 44 VEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRY 103 Query: 329 TVGQSGESAA--------KERPSLFGGARPREQVLRDRGVDALASDLENTSPVG 466 T G+ + K+ + GG RP L GVD L T P G Sbjct: 104 TYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVDTKGCRLFETDPSG 157
>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 32.0 bits (71), Expect = 1.1 Identities = 19/54 (35%), Positives = 23/54 (42%) Frame = +2 Query: 38 ASHEGRVGEGKIGEVPERPKLKLLPRSKPIESPAPSPTYVEEKQVLPVPVIASV 199 AS V I +P P L +P PI P P PT V P+P + SV Sbjct: 179 ASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSV 232
>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 32.0 bits (71), Expect = 1.1 Identities = 19/54 (35%), Positives = 23/54 (42%) Frame = +2 Query: 38 ASHEGRVGEGKIGEVPERPKLKLLPRSKPIESPAPSPTYVEEKQVLPVPVIASV 199 AS V I +P P L +P PI P P PT V P+P + SV Sbjct: 179 ASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSV 232
>MURD_PHOLL (Q7N145) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 436 Score = 31.6 bits (70), Expect = 1.4 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = +2 Query: 335 GQSGESAAKERPSLFGGARPREQVLRDRGVDALASDLENTSPVGRSKNEFAKVEQKVEAM 514 G+ G+ A+ RP + EQ +RD +A D+ SP S ++F EQ+ Sbjct: 369 GRDGKQLAQLRPEIATLTETMEQAIRDIAPRLVAGDMVLLSPACASLDQFRNFEQRGHEF 428 Query: 515 T 517 T Sbjct: 429 T 429
>Y103_STRA5 (Q8E294) UPF0340 protein SAG0103| Length = 189 Score = 31.2 bits (69), Expect = 1.8 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +2 Query: 239 IVAKMGVAGADAESRATVERPRLNLKPRSNTVGQSGESAAKERPSLFGGAR 391 IVA G+ D ++R ++ L P S +G + +A RP L GGAR Sbjct: 128 IVAHAGIDIGDTSIGMHIKRVQVPLIPISRELGGAHVTALASRPKLIGGAR 178
>Y102_STRA3 (Q8E7Q2) UPF0340 protein gbs0102| Length = 189 Score = 31.2 bits (69), Expect = 1.8 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +2 Query: 239 IVAKMGVAGADAESRATVERPRLNLKPRSNTVGQSGESAAKERPSLFGGAR 391 IVA G+ D ++R ++ L P S +G + +A RP L GGAR Sbjct: 128 IVAHAGIDIGDTSIGMHIKRVQVPLIPISRELGGAHVTALASRPKLIGGAR 178
>COPB2_MOUSE (O55029) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 31.2 bits (69), Expect = 1.8 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Frame = +2 Query: 8 WXKGVEPVRPASHEGRVGEGKIGEVPERPKLKLLPRSKPIESP---APSPTYVEEKQVLP 178 W P+ + E V E G P RP + P KP SP A T+ EEK +L Sbjct: 819 WPAKQYPLVTPNEERNVMEEAKGFQPSRPTAQQEPDGKPASSPVIMASQTTHKEEKSLLE 878 Query: 179 VPVIASVMQVE 211 + V +++E Sbjct: 879 LEVDLDNLELE 889
>Y1894_STRT2 (Q5M2E4) UPF0340 protein stu1894| Length = 187 Score = 31.2 bits (69), Expect = 1.8 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = +2 Query: 239 IVAKMGVAGADAESRATVERPRLNLKPRSNTVGQSGESAAKERPSLFGGAR 391 I+A+ G+ D V+R ++ L+P + +G + +A RP L GGAR Sbjct: 126 ILAQAGIDIGDTSIGMHVKRVQVPLRPIISELGGAHVTALASRPKLIGGAR 176
>Y1894_STRT1 (Q5LXU2) UPF0340 protein str1894| Length = 187 Score = 31.2 bits (69), Expect = 1.8 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = +2 Query: 239 IVAKMGVAGADAESRATVERPRLNLKPRSNTVGQSGESAAKERPSLFGGAR 391 I+A+ G+ D V+R ++ L+P + +G + +A RP L GGAR Sbjct: 126 ILAQAGIDIGDTSIGMHVKRVQVPLRPIISELGGAHVTALASRPKLIGGAR 176
>Y489_LACLA (Q9CI77) UPF0340 protein LL0489| Length = 180 Score = 30.8 bits (68), Expect = 2.4 Identities = 21/64 (32%), Positives = 30/64 (46%) Frame = +2 Query: 206 VEVVHEVRQNVIVAKMGVAGADAESRATVERPRLNLKPRSNTVGQSGESAAKERPSLFGG 385 VEV H IVA G+ D V+ ++ ++P +G + +A K RP L GG Sbjct: 121 VEVEH------IVANAGLDIGDTSIGMHVKHVQIPVRPILRELGGAHVTALKSRPKLIGG 174 Query: 386 ARPR 397 R R Sbjct: 175 ERAR 178
>PROQ_YERPE (Q8ZFJ9) ProP effector| Length = 237 Score = 30.8 bits (68), Expect = 2.4 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +2 Query: 74 GEVPERPKLKLLPRSKPIESPAPSPTYVEEKQVLPVPVIASVMQVEVVHEVR 229 G PE K + PR + + P P VEE Q PVPV + ++++ E++ Sbjct: 151 GAAPENRKPRQSPRPQQVRPPRPQ---VEENQPRPVPV-TDISKLQIGQEIK 198
>IF2_AZOSE (Q5NZS1) Translation initiation factor IF-2| Length = 945 Score = 30.8 bits (68), Expect = 2.4 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 5/154 (3%) Frame = +2 Query: 65 GKIGEVPE-----RPKLKLLPRSKPIESPAPSPTYVEEKQVLPVPVIASVMQVEVVHEVR 229 G+I PE P + +P +P+ P P P + E + P P Q E E R Sbjct: 123 GEIEPTPEPENIVEPVAEAIPEPEPVREPEPEPEPIVEPEPEPEPEPEPEPQPE--PEPR 180 Query: 230 QNVIVAKMGVAGADAESRATVERPRLNLKPRSNTVGQSGESAAKERPSLFGGARPREQVL 409 A + +GA A+ A V P + P ++ E AA+ER AR +++ Sbjct: 181 PEPEPATV-ESGAPAKPEAPVRAP--SRPPLRVSILSDEERAARERE-----ARRHQELR 232 Query: 410 RDRGVDALASDLENTSPVGRSKNEFAKVEQKVEA 511 + D A + ++ A+ E +V A Sbjct: 233 ARQAADLKAKQDREAAARAAAEARRAEEEARVRA 266
>Y078_SYMTH (Q67TD0) UPF0340 protein STH78| Length = 177 Score = 30.4 bits (67), Expect = 3.1 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Frame = +2 Query: 107 LPRSKPIESPAPSPTYVEEKQVLPVPVIASVMQVEVVHEVRQNVIVAKMGV-AGADAESR 283 L R+ +E A E V+PVP + + + V+V ++ AG D Sbjct: 73 LNRALVVERAAAERYDWERVTVVPVPRAGGALAARAMRRLPDAVVVEEIKADAGLDIGLT 132 Query: 284 AT---VERPRLNLKPRSNTVGQSGESAAKERPSLFGGAR 391 + R + ++ ++ +G + AA+ RP L GGAR Sbjct: 133 LIGMHLRRVAVPVRLKTAAIGHARVVAARTRPKLIGGAR 171
>ARGJ_CHLCH (Q3ASI6) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 429 Score = 30.4 bits (67), Expect = 3.1 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 9/122 (7%) Frame = +2 Query: 128 ESPAPSPTYVEEKQVLPVPVI---------ASVMQVEVVHEVRQNVIVAKMGVAGADAES 280 +SPA + PV+ A+ M+ V + N K G+A A A + Sbjct: 66 DSPASAAALFTTNLCCAAPVVLSRNHLQQSAASMRAIVCNSGNANAATGKQGMADAQAMA 125 Query: 281 RATVERPRLNLKPRSNTVGQSGESAAKERPSLFGGARPREQVLRDRGVDALASDLENTSP 460 A E+ L++KP V +G + G P E+V G+ AL + L++ S Sbjct: 126 DAVAEQ--LSIKPEEVLVASTG---------VIGQLLPMERV--HAGIVALPATLQSNSV 172 Query: 461 VG 466 +G Sbjct: 173 LG 174
>POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 1063 Score = 30.4 bits (67), Expect = 3.1 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +2 Query: 71 IGEVPERPKLKLLPRSKPIESPAPSPTYVEEKQVLPVPVIAS 196 +G PERP+L+L+ P+ AP P +V PVI S Sbjct: 828 VGATPERPRLRLVDADDPLLRTAPGP-----GEVWVTPVIGS 864
>POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 992 Score = 30.4 bits (67), Expect = 3.1 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +2 Query: 71 IGEVPERPKLKLLPRSKPIESPAPSPTYVEEKQVLPVPVIAS 196 +G PERP+L+L+ P+ AP P +V PVI S Sbjct: 826 VGATPERPRLRLVDADDPLLRTAPGP-----GEVWVTPVIGS 862
>POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 1063 Score = 30.4 bits (67), Expect = 3.1 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +2 Query: 71 IGEVPERPKLKLLPRSKPIESPAPSPTYVEEKQVLPVPVIAS 196 +G PERP+L+L+ P+ AP P +V PVI S Sbjct: 828 VGATPERPRLRLVDADDPLLRTAPGP-----GEVWVTPVIGS 864
>YPJA_ECOLI (P52143) Hypothetical outer membrane protein ypjA| Length = 1569 Score = 30.0 bits (66), Expect = 4.0 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = +2 Query: 89 RPKLKLLPRSKPIESPAPSPTYVEEKQVLP--VPVIASVMQVEVVHEVRQNVIVAKMGVA 262 +P K P KP +P P+PT V EK++ P V+ + +V + N I ++ + Sbjct: 1240 KPDPKPDPNPKPDPTPDPTPTPVPEKRITPSTAAVLNMAATLPLVFDAELNSIRERLNIM 1299 Query: 263 GA 268 A Sbjct: 1300 KA 1301
>POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 1063 Score = 30.0 bits (66), Expect = 4.0 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +2 Query: 71 IGEVPERPKLKLLPRSKPIESPAPSPTYVEEKQVLPVPVIAS 196 +G PERP+L+L+ P+ AP P +V PVI S Sbjct: 828 VGVTPERPRLRLVDADDPLLRTAPGP-----GEVWVTPVIGS 864
>Y044_UREPA (Q9PRA1) Hypothetical protein UU044| Length = 782 Score = 29.6 bits (65), Expect = 5.3 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = +2 Query: 77 EVPERPKLKLLPRSKPIESPAPSPTYVEEKQVLP 178 E P++P++K P+ +PI PAP ++++LP Sbjct: 111 EEPKKPEIKPEPKPEPIPQPAPPIETKPKEELLP 144
>RK12_ORYSA (O22386) 50S ribosomal protein L12, chloroplast precursor (CL12)| (Fragment) Length = 158 Score = 29.6 bits (65), Expect = 5.3 Identities = 26/66 (39%), Positives = 34/66 (51%) Frame = -2 Query: 513 IASTFCSTXANSFFDLPTGEVFSRSLAKASTPRSLRTCSRGRAPPKRDGLSFAALSPD*P 334 +AST S+ A S LP+ S + A A+ PRS SR R P+R A+ + D P Sbjct: 1 MASTALSS-AFSLLSLPSSS--SPAAAAAAAPRSFAVPSRAR--PRRAVAVVASTATDSP 55 Query: 333 TVLERG 316 VLE G Sbjct: 56 KVLELG 61
>IF2_BACFR (Q64ZR4) Translation initiation factor IF-2| Length = 1015 Score = 29.6 bits (65), Expect = 5.3 Identities = 47/187 (25%), Positives = 70/187 (37%), Gaps = 23/187 (12%) Frame = +2 Query: 23 EPVRPASHE-GRVGEGKIGEVPERPKLKLLPRSKPIESPAPSPTYVEEKQVLP--VPVIA 193 E VRP G++ K+ E+ +K E P P P EEK+V PV+ Sbjct: 102 EDVRPKFKPVGKIDLDKLNRKVEKEPVK--------EEPKPQPVAAEEKKVAEEVKPVVN 153 Query: 194 SVMQVEV-----------VHEVRQNVIVAKMGVAGADAESRATVERPRLNLKPRSNTVGQ 340 V + EV V E + V+V K E P++ + P + Sbjct: 154 EVKKEEVTVTPATSEPKPVKEEPKPVVVEKPVETEKKVVEEVKKEEPKVVVSPEKTEKKE 213 Query: 341 SGESA-------AKERPSLFGGARPREQVLRDR--GVDALASDLENTSPVGRSKNEFAKV 493 A KE +F RP E V + G LA+ ++T P +SK E K Sbjct: 214 EKPVAEAPVTPVEKEEEGVF-KIRPTEFVSKINVIGQIDLAALNQSTRPKKKSKEEKRKE 272 Query: 494 EQKVEAM 514 ++ E + Sbjct: 273 REEKEKL 279
>IF2_BACFN (Q5LIN1) Translation initiation factor IF-2| Length = 1015 Score = 29.6 bits (65), Expect = 5.3 Identities = 47/187 (25%), Positives = 70/187 (37%), Gaps = 23/187 (12%) Frame = +2 Query: 23 EPVRPASHE-GRVGEGKIGEVPERPKLKLLPRSKPIESPAPSPTYVEEKQVLP--VPVIA 193 E VRP G++ K+ E+ +K E P P P EEK+V PV+ Sbjct: 102 EDVRPKFKPVGKIDLDKLNRKVEKEPVK--------EEPKPQPVAAEEKKVAEEVKPVVN 153 Query: 194 SVMQVEV-----------VHEVRQNVIVAKMGVAGADAESRATVERPRLNLKPRSNTVGQ 340 V + EV V E + V+V K E P++ + P + Sbjct: 154 EVKKEEVTVTPATSEPKPVKEEPKPVVVEKPVETEKKVVEEVKKEEPKVVVSPEKTEKKE 213 Query: 341 SGESA-------AKERPSLFGGARPREQVLRDR--GVDALASDLENTSPVGRSKNEFAKV 493 A KE +F RP E V + G LA+ ++T P +SK E K Sbjct: 214 EKPVAEAPVTPVEKEEEGVF-KIRPTEFVSKINVIGQIDLAALNQSTRPKKKSKEEKRKE 272 Query: 494 EQKVEAM 514 ++ E + Sbjct: 273 REEKEKL 279
>BMP2K_MOUSE (Q91Z96) BMP-2-inducible protein kinase (EC 2.7.11.1) (BIKe)| Length = 1138 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 4/58 (6%) Frame = -3 Query: 503 PSARPXQTHFLTCQLE----RCSQGHLPKHPHHDL*ELVPGAEHHQRGMASPSQHFHQ 342 P +P Q H + QL+ R Q HL +HPHH HHQ+ Q Q Sbjct: 423 PPQQPPQQHRVLQQLQQGDWRLQQLHLHRHPHH----------HHQQQQQQQQQQQQQ 470
>Y3766_BACHD (Q9K6G3) UPF0340 protein BH3766| Length = 188 Score = 29.3 bits (64), Expect = 6.9 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%) Frame = +2 Query: 158 EEKQVLPVPVIASVMQVEVVHEVRQNVIV----AKMGVAGADAESRATVERPRLNLKPRS 325 EE V+PV M + R VIV A G+ D ++R + ++ Sbjct: 93 EEVAVIPVRKAGGAMATYAFTQFRDPVIVEQIRADAGIDIGDTFIGMHLKRVAVPVRSSI 152 Query: 326 NTVGQSGESAAKERPSLFGGAR 391 + +G + + A RP L GG R Sbjct: 153 SAIGDAHVTMAYSRPKLIGGVR 174
>ZN179_RAT (O70418) Zinc finger protein 179 (Brain finger protein)| Length = 631 Score = 29.3 bits (64), Expect = 6.9 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 8/58 (13%) Frame = +2 Query: 29 VRPASHEGRVGEGKIGEV--------PERPKLKLLPRSKPIESPAPSPTYVEEKQVLP 178 VR +SH + G+G +G++ P+ +L L R++ PAP +V + Q P Sbjct: 316 VRDSSHHNKSGQGHVGDILQKLSGKYPKVQELLLGKRARCYLLPAPERQWVNKGQASP 373
>NUAK1_HUMAN (O60285) NUAK family, SNF1-like kinase 1 (EC 2.7.11.1)| (AMPK-related protein kinase 5) Length = 661 Score = 29.3 bits (64), Expect = 6.9 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Frame = +2 Query: 245 AKMGVAGADAESRATVERPR-LNLKPRSNTVGQSGESAAKERPSLFGGARPR 397 AKM S +ER R L + N QSG+ A E PS RP+ Sbjct: 347 AKMKGLAKPTTSEVMLERQRSLKKSKKENDFAQSGQDAVPESPSKLSSKRPK 398
>TF7L1_HUMAN (Q9HCS4) Transcription factor 7-like 1 (HMG box transcription| factor 3) (TCF-3) Length = 588 Score = 29.3 bits (64), Expect = 6.9 Identities = 15/53 (28%), Positives = 24/53 (45%) Frame = +2 Query: 62 EGKIGEVPERPKLKLLPRSKPIESPAPSPTYVEEKQVLPVPVIASVMQVEVVH 220 EG + ++P ++ LP KP +SPA S + + P +AS H Sbjct: 444 EGALASKSKKPCVQYLPPEKPCDSPASSHGSMLDSPATPSAALASPAAPAATH 496
>DIP2_YEAST (Q12220) DOM34-interacting protein 2 (U3 small nucleolar| RNA-associated protein 12) (U3 snoRNA-associated protein 12) Length = 943 Score = 29.3 bits (64), Expect = 6.9 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = -1 Query: 235 ILAHFMNNLNLHDTRYHRDRKDLLLFNIGR*WCRGFDWLGTRKQLQLGSLWDL 77 I+ + + L+ R H+D +I WC+G DWL + + + LWDL Sbjct: 146 IVWDLVGEVGLYKLRSHKD-------SITGFWCQGEDWLISTSKDGMIKLWDL 191
>FOXM1_RAT (P97691) Forkhead box protein M1 (Winged helix factor from INS-1| cells) (INS-1 winged helix) Length = 759 Score = 29.3 bits (64), Expect = 6.9 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 10/83 (12%) Frame = +2 Query: 89 RPKLK-LLPRSK----PIESPAPSPTYVEEKQVLPVPVIASVMQVEVVH-----EVRQNV 238 R K+K LLPR PI+ P ++ +P+P+ AS+M E+ + V Sbjct: 363 RRKMKPLLPRVSSYLVPIQFPVNQSLVLQPSVKVPLPLAASLMSSELARHSKRVRIAPKV 422 Query: 239 IVAKMGVAGADAESRATVERPRL 307 +++ G+A A E+P L Sbjct: 423 LLSNEGIAPLPATEPMKEEKPLL 445
>FOLR2_HUMAN (P14207) Folate receptor beta precursor (FR-beta) (Folate receptor| 2) (Folate receptor, fetal/placental) (Placental folate-binding protein) (FBP) Length = 255 Score = 29.3 bits (64), Expect = 6.9 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -1 Query: 142 WCRGFDWLGTRKQLQLGSLWDLSDFPFPNPAFMRCRPHWFHT 17 W RG+DW + G+L + FP PA + C W H+ Sbjct: 150 WHRGWDWTSGVNKCPAGALCRTFESYFPTPAAL-CEGLWSHS 190
>TF7L1_MOUSE (Q9Z1J1) Transcription factor 7-like 1 (HMG box transcription| factor 3) (TCF-3) (mTCF-3) Length = 584 Score = 29.3 bits (64), Expect = 6.9 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = +2 Query: 62 EGKIGEVPERPKLKLLPRSKPIESPAPSPTYVEEKQVLPVPVIASVMQVEVVH 220 EG + ++P ++ LP KP +SPA S + P +AS H Sbjct: 440 EGALASKSKKPCIQYLPPEKPCDSPASSHGSALDSPATPSAALASPAAPAATH 492
>SEPT9_HUMAN (Q9UHD8) Septin-9 (MLL septin-like fusion protein) (MLL septin-like| fusion protein MSF-A) (Ovarian/Breast septin) (Ov/Br septin) (Septin D1) Length = 586 Score = 28.9 bits (63), Expect = 9.0 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 2/123 (1%) Frame = +2 Query: 20 VEPVRPASHEGRVGEGKIGEVPERPKLKLLPRSKPIESPAP--SPTYVEEKQVLPVPVIA 193 V+P A K+ EVP P P+ I+ P P +PT Q L A Sbjct: 155 VKPQESAHRRMEPPASKVPEVPTAPATDAAPKRVEIQMPKPAEAPTAPSPAQTLENSEPA 214 Query: 194 SVMQVEVVHEVRQNVIVAKMGVAGADAESRATVERPRLNLKPRSNTVGQSGESAAKERPS 373 V Q++ E + VA+ +A A + PR + Q+ S ++ P Sbjct: 215 PVSQLQSRLEPKPQPPVAEATPRSQEATEAAPSCVGDMADTPRDAGLKQAPASRNEKAPV 274 Query: 374 LFG 382 FG Sbjct: 275 DFG 277
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 28.9 bits (63), Expect = 9.0 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +2 Query: 92 PKLKLLPRSKPIESPAPSPTYVEEKQVLPVP 184 P L+L+P+S+P+ S P + + Q LP P Sbjct: 978 PPLQLMPQSQPLPSSPAQPPGLTQSQSLPPP 1008
>Y1015_HAEIN (P71364) Hypothetical permease HI1015| Length = 488 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/33 (39%), Positives = 23/33 (69%) Frame = -2 Query: 336 PTVLERGFRFSRGRSTVALLSASAPATPILATI 238 P ++ RF +G TVA+++A++ ++PILA I Sbjct: 358 PFIVSTLVRFIQGSGTVAMITAASISSPILAQI 390
>GLNB_AZOBR (P21193) Nitrogen regulatory protein P-II| Length = 112 Score = 28.9 bits (63), Expect = 9.0 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = +2 Query: 14 KGVEPVRPASHEGRVGEGKIGEVP 85 + +E ++ A+H GR+G+GKI P Sbjct: 72 RAIEAIQQAAHTGRIGDGKIFVTP 95
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +2 Query: 26 PVRPASHEGRVGEGKIGEVPERPKLKLLPRSKPIESPAPSP 148 P +PA R G + P P +L PR+ P +P P P Sbjct: 2354 PQKPARSVQRERRGLVLSPPPPPPGELAPRAHPARTPRPGP 2394
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 28.9 bits (63), Expect = 9.0 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +2 Query: 92 PKLKLLPRSKPIESPAPSPTYVEEKQVLPVP 184 P L+L+P+S+P+ S P + + Q LP P Sbjct: 977 PPLQLMPQSQPLPSSPAQPPGLTQSQSLPPP 1007
>CCNB1_HUMAN (P14635) G2/mitotic-specific cyclin-B1| Length = 433 Score = 28.9 bits (63), Expect = 9.0 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Frame = +2 Query: 2 LPWXKGVEPVRPASHEGRVGEGKIGEVPER-PKLKLLPRSKPIESPAPSPT--YVEEKQV 172 +P K +P S G+V + K+ + E+ P L +P S+P+ P P P V+E+++ Sbjct: 60 MPMKKEAKP----SATGKVIDKKLPKPLEKVPMLVPVPVSEPVPEPEPEPEPEPVKEEKL 115 Query: 173 LPVPVI 190 P P++ Sbjct: 116 SPEPIL 121
>ARHGC_MOUSE (Q8R4H2) Rho guanine nucleotide exchange factor 12| (Leukemia-associated RhoGEF) Length = 1543 Score = 28.9 bits (63), Expect = 9.0 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Frame = +2 Query: 116 SKPIESPAPSPTYVEEKQVLPVPVIASVMQVEVVHEVRQNVIVAKMGVAGADAESRAT-V 292 +KPI P P P + + P +++V H + VAG + R + Sbjct: 1139 TKPIPLPQPPPCEGDNDEEEPA-------KLKVEHH--------DLSVAGLQSPDRVLGL 1183 Query: 293 ERPRLNLKPRSNTVGQSGESAAK 361 E P ++ KP+S+++ G+SAA+ Sbjct: 1184 ESPLISSKPQSHSLNTPGKSAAE 1206 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,057,345 Number of Sequences: 219361 Number of extensions: 1805279 Number of successful extensions: 6541 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 5882 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6449 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
