ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags32c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 188 2e-44
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 188 2e-44
3dbj|AK069816.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 2e-44
4dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic D... 188 2e-44
5gb|AY109085.1| Zea mays PCO124752 mRNA sequence 180 4e-42
6dbj|AK058465.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
7gb|AY105283.1| Zea mays PCO124753 mRNA sequence 103 7e-19
8ref|XM_493822.1| Oryza sativa (japonica cultivar-group), predic... 86 2e-13
9emb|AL596326.5| Human DNA sequence from clone RP11-373J16 on chr... 44 0.55
10gb|L43057.1|XELINTA3S Xenopus laevis integrin alpha 3 subunit mR... 44 0.55
11gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 2.2
12ref|NM_060296.2| Caenorhabditis elegans ZC247.2 (ZC247.2) mRNA, ... 42 2.2
13dbj|BS000227.1| Pan troglodytes chromosome 22 clone:PTB-059D22, ... 42 2.2
14emb|Z80221.2|CEZC247 Caenorhabditis elegans Cosmid ZC247, comple... 42 2.2
15ref|NM_020651.2| Homo sapiens pellino homolog 1 (Drosophila) (PE... 40 8.6
16ref|XM_615035.2| PREDICTED: Bos taurus similar to pellino protei... 40 8.6
17gb|AY915712.1| Schistosoma japonicum SJCHGC08867 protein mRNA, p... 40 8.6
18ref|XM_536015.2| PREDICTED: Canis familiaris similar to CG9410-P... 40 8.6
19gb|AF461903.1| Homo sapiens FP7162 mRNA, complete cds 40 8.6
20gb|BC063611.1| Homo sapiens pellino homolog 1 (Drosophila), mRNA... 40 8.6
21ref|XM_538508.2| PREDICTED: Canis familiaris similar to pellino ... 40 8.6
22gb|AC123807.4| Mus musculus BAC clone RP24-157J13 from chromosom... 40 8.6
23gb|AY364257.1| Homo sapiens clone peg2514 pellino (PELI1) mRNA, ... 40 8.6
24gb|BC050533.1| Homo sapiens pellino homolog 1 (Drosophila), mRNA... 40 8.6
25emb|AL590822.36| Human DNA sequence from clone RP11-181G12 on ch... 40 8.6
26emb|AL445237.16| Human DNA sequence from clone RP13-238F13 on ch... 40 8.6
27emb|AL441985.9| Human DNA sequence from clone RP11-417D4 on chro... 40 8.6
28gb|AC164578.5| Mus musculus BAC RP23-15E20 (Roswell Park Cancer... 40 8.6
29gb|AF300987.1| Homo sapiens pellino related intracellular signal... 40 8.6
30gb|BC050019.1| Homo sapiens pellino homolog 1 (Drosophila), mRNA... 40 8.6
31gb|BC042957.1| Homo sapiens cDNA clone IMAGE:5278322 40 8.6
32dbj|AK126870.1| Homo sapiens cDNA FLJ44922 fis, clone BRAMY3011865 40 8.6
33dbj|AK027668.1| Homo sapiens cDNA FLJ14762 fis, clone NT2RP30034... 40 8.6
34gb|AC008453.6| Homo sapiens chromosome 5 clone CTC-345K18, compl... 40 8.6
35gb|AC011383.6| Homo sapiens chromosome 5 clone CTB-140J7, comple... 40 8.6
36gb|AF302505.1|AF302505 Homo sapiens pellino 1 (PELI1) mRNA, comp... 40 8.6
37gb|AC116104.7| Mus musculus chromosome 5, clone RP23-18K20, comp... 40 8.6
38gb|AC012368.6| Homo sapiens BAC clone RP11-547M24 from 2, comple... 40 8.6
39emb|BX649152.1|HSM809304 Homo sapiens mRNA; cDNA DKFZp686C18116 ... 40 8.6
40gb|AC005411.1|AC005411 Homo sapiens chromosome 17, clone hRPK.72... 40 8.6
41emb|AJ278859.1|HSA278859 Homo sapiens mRNA for Pellino protein (... 40 8.6
42emb|CR392029.12| Zebrafish DNA sequence from clone DKEY-188H10 i... 40 8.6 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  188 bits (95), Expect = 2e-44
 Identities = 274/329 (83%), Gaps = 6/329 (1%)
 Strand = Plus / Minus

                                                                           
Query: 15      cattctttgacgattccgttcca-gttcccctgcatacacgtctggattctcaccgaagt 73
               |||||||||| ||||| |||||| |||| ||||||||||| |||||||||||||| || |
Sbjct: 1700550 cattctttgatgattctgttccaagttcacctgcatacacatctggattctcaccaaaat 1700491

                                                                           
Query: 74      tcggtgaaagtcgtgacgacagctcctcctataacttcggaaggtttgattccttcagat 133
               || ||||||| || || || |||||||| |||||||| |||||||| |||||||||||||
Sbjct: 1700490 tcagtgaaagccgcgatgatagctcctcatataacttaggaaggttcgattccttcagat 1700431

                                                                           
Query: 134     cccaggacagcg---ccgtcccacaggaaagtcgcttttccaggttcgactctgtaacca 190
               ||||||| ||||    | |||| ||||||||||| ||||||||||| |||||  ||| ||
Sbjct: 1700430 cccaggagagcggattcttccctcaggaaagtcgtttttccaggtttgactccataaaca 1700371

                                                                           
Query: 191     gctccaaaggcgagagcgcagcaggatttgactcatcaaacagctcgagaaattttggcc 250
                ||||||||| ||||  | | | ||||| || ||| | || ||||| | |||||| || |
Sbjct: 1700370 actccaaaggtgagaatgtaactggattcgattcaccgaaaagctcaacaaatttcggtc 1700311

                                                                           
Query: 251     ggttcgattcttttgatgaagctgatcctttcggttccactgggccttttaaagcatcag 310
               |||| |||||||||||||| || ||||| || ||||| | ||| || |||||||||||||
Sbjct: 1700310 ggtttgattcttttgatgatgccgatccatttggttcaagtggaccctttaaagcatcag 1700251

                                            
Query: 311     g-agcacggtcgccccccaaattctgata 338
               | |||| |||| |||||||||||||||||
Sbjct: 1700250 gtagca-ggtctccccccaaattctgata 1700223
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  188 bits (95), Expect = 2e-44
 Identities = 274/329 (83%), Gaps = 6/329 (1%)
 Strand = Plus / Minus

                                                                           
Query: 15      cattctttgacgattccgttcca-gttcccctgcatacacgtctggattctcaccgaagt 73
               |||||||||| ||||| |||||| |||| ||||||||||| |||||||||||||| || |
Sbjct: 1700548 cattctttgatgattctgttccaagttcacctgcatacacatctggattctcaccaaaat 1700489

                                                                           
Query: 74      tcggtgaaagtcgtgacgacagctcctcctataacttcggaaggtttgattccttcagat 133
               || ||||||| || || || |||||||| |||||||| |||||||| |||||||||||||
Sbjct: 1700488 tcagtgaaagccgcgatgatagctcctcatataacttaggaaggttcgattccttcagat 1700429

                                                                           
Query: 134     cccaggacagcg---ccgtcccacaggaaagtcgcttttccaggttcgactctgtaacca 190
               ||||||| ||||    | |||| ||||||||||| ||||||||||| |||||  ||| ||
Sbjct: 1700428 cccaggagagcggattcttccctcaggaaagtcgtttttccaggtttgactccataaaca 1700369

                                                                           
Query: 191     gctccaaaggcgagagcgcagcaggatttgactcatcaaacagctcgagaaattttggcc 250
                ||||||||| ||||  | | | ||||| || ||| | || ||||| | |||||| || |
Sbjct: 1700368 actccaaaggtgagaatgtaactggattcgattcaccgaaaagctcaacaaatttcggtc 1700309

                                                                           
Query: 251     ggttcgattcttttgatgaagctgatcctttcggttccactgggccttttaaagcatcag 310
               |||| |||||||||||||| || ||||| || ||||| | ||| || |||||||||||||
Sbjct: 1700308 ggtttgattcttttgatgatgccgatccatttggttcaagtggaccctttaaagcatcag 1700249

                                            
Query: 311     g-agcacggtcgccccccaaattctgata 338
               | |||| |||| |||||||||||||||||
Sbjct: 1700248 gtagca-ggtctccccccaaattctgata 1700221
to top
>dbj|AK069816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034E02, full
            insert sequence
          Length = 3782

 Score =  188 bits (95), Expect = 2e-44
 Identities = 274/329 (83%), Gaps = 6/329 (1%)
 Strand = Plus / Plus

                                                                        
Query: 15   cattctttgacgattccgttcca-gttcccctgcatacacgtctggattctcaccgaagt 73
            |||||||||| ||||| |||||| |||| ||||||||||| |||||||||||||| || |
Sbjct: 3073 cattctttgatgattctgttccaagttcacctgcatacacatctggattctcaccaaaat 3132

                                                                        
Query: 74   tcggtgaaagtcgtgacgacagctcctcctataacttcggaaggtttgattccttcagat 133
            || ||||||| || || || |||||||| |||||||| |||||||| |||||||||||||
Sbjct: 3133 tcagtgaaagccgcgatgatagctcctcatataacttaggaaggttcgattccttcagat 3192

                                                                        
Query: 134  cccaggacagcg---ccgtcccacaggaaagtcgcttttccaggttcgactctgtaacca 190
            ||||||| ||||    | |||| ||||||||||| ||||||||||| |||||  ||| ||
Sbjct: 3193 cccaggagagcggattcttccctcaggaaagtcgtttttccaggtttgactccataaaca 3252

                                                                        
Query: 191  gctccaaaggcgagagcgcagcaggatttgactcatcaaacagctcgagaaattttggcc 250
             ||||||||| ||||  | | | ||||| || ||| | || ||||| | |||||| || |
Sbjct: 3253 actccaaaggtgagaatgtaactggattcgattcaccgaaaagctcaacaaatttcggtc 3312

                                                                        
Query: 251  ggttcgattcttttgatgaagctgatcctttcggttccactgggccttttaaagcatcag 310
            |||| |||||||||||||| || ||||| || ||||| | ||| || |||||||||||||
Sbjct: 3313 ggtttgattcttttgatgatgccgatccatttggttcaagtggaccctttaaagcatcag 3372

                                         
Query: 311  g-agcacggtcgccccccaaattctgata 338
            | |||| |||| |||||||||||||||||
Sbjct: 3373 gtagca-ggtctccccccaaattctgata 3400
to top
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              clone:P0043E01
          Length = 154128

 Score =  188 bits (95), Expect = 2e-44
 Identities = 274/329 (83%), Gaps = 6/329 (1%)
 Strand = Plus / Minus

                                                                          
Query: 15     cattctttgacgattccgttcca-gttcccctgcatacacgtctggattctcaccgaagt 73
              |||||||||| ||||| |||||| |||| ||||||||||| |||||||||||||| || |
Sbjct: 113013 cattctttgatgattctgttccaagttcacctgcatacacatctggattctcaccaaaat 112954

                                                                          
Query: 74     tcggtgaaagtcgtgacgacagctcctcctataacttcggaaggtttgattccttcagat 133
              || ||||||| || || || |||||||| |||||||| |||||||| |||||||||||||
Sbjct: 112953 tcagtgaaagccgcgatgatagctcctcatataacttaggaaggttcgattccttcagat 112894

                                                                          
Query: 134    cccaggacagcg---ccgtcccacaggaaagtcgcttttccaggttcgactctgtaacca 190
              ||||||| ||||    | |||| ||||||||||| ||||||||||| |||||  ||| ||
Sbjct: 112893 cccaggagagcggattcttccctcaggaaagtcgtttttccaggtttgactccataaaca 112834

                                                                          
Query: 191    gctccaaaggcgagagcgcagcaggatttgactcatcaaacagctcgagaaattttggcc 250
               ||||||||| ||||  | | | ||||| || ||| | || ||||| | |||||| || |
Sbjct: 112833 actccaaaggtgagaatgtaactggattcgattcaccgaaaagctcaacaaatttcggtc 112774

                                                                          
Query: 251    ggttcgattcttttgatgaagctgatcctttcggttccactgggccttttaaagcatcag 310
              |||| |||||||||||||| || ||||| || ||||| | ||| || |||||||||||||
Sbjct: 112773 ggtttgattcttttgatgatgccgatccatttggttcaagtggaccctttaaagcatcag 112714

                                           
Query: 311    g-agcacggtcgccccccaaattctgata 338
              | |||| |||| |||||||||||||||||
Sbjct: 112713 gtagca-ggtctccccccaaattctgata 112686
to top
>gb|AY109085.1| Zea mays PCO124752 mRNA sequence
          Length = 805

 Score =  180 bits (91), Expect = 4e-42
 Identities = 271/329 (82%), Gaps = 4/329 (1%)
 Strand = Plus / Plus

                                                                       
Query: 15  cattctttgacgattccgttcca-gttcccctgcatacacgtctggattctcaccgaagt 73
           ||||||| |||||||| |||||| |||| ||||||||||| ||||| ||||| || || |
Sbjct: 246 cattcttcgacgattctgttccaagttctcctgcatacacatctgggttctctccaaaat 305

                                                                       
Query: 74  tcggtgaaagtcgtgacgacagctcctcctataacttcggaaggtttgattccttcagat 133
           | || ||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct: 306 ttggcgaaagccgtgacgatagctcctcttataacttcgggaggtttgattccttcagat 365

                                                                       
Query: 134 cccaggaca---gcgccgtcccacaggaaagtcgcttttccaggttcgactctgtaacca 190
           |||| ||||   |  || |||| |||||||| || || ||||||||||||||  | | ||
Sbjct: 366 cccaagacactggatccttccctcaggaaagccgtttctccaggttcgactccattagca 425

                                                                       
Query: 191 gctccaaaggcgagagcgcagcaggatttgactcatcaaacagctcgagaaattttggcc 250
           ||||||| |||||||  | | ||||||||||| ||   || |||||  ||||||||||||
Sbjct: 426 gctccaagggcgagaatgtatcaggatttgacacagggaatagctcacgaaattttggcc 485

                                                                       
Query: 251 ggttcgattcttttgatgaagctgatcctttcggttccactgggccttttaaagcatcag 310
           |||| || ||||||||||| || || || |||||||| | ||| |||||||||||||| |
Sbjct: 486 ggtttgactcttttgatgacgccgacccattcggttcaagtggaccttttaaagcatcgg 545

                                        
Query: 311 gagcacggtcgccccccaaattctgatat 339
           ||   ||||| || ||||| |||||||||
Sbjct: 546 gaagccggtctccacccaagttctgatat 574
to top
>dbj|AK058465.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-A11, full
           insert sequence
          Length = 736

 Score =  135 bits (68), Expect = 2e-28
 Identities = 219/266 (82%), Gaps = 5/266 (1%)
 Strand = Plus / Plus

                                                                       
Query: 77  gtgaaagtcgtgacgacagctcctcctataacttcggaaggtttgattccttcagatccc 136
           ||||||| || || || |||||||| |||||||| |||||||| ||||||||||||||||
Sbjct: 4   gtgaaagccgcgatgatagctcctcatataacttaggaaggttcgattccttcagatccc 63

                                                                       
Query: 137 aggacagcgc---cgtcccacaggaaagtcgcttttccaggttcgactctgtaaccagct 193
           |||| ||||    | |||| ||||||||||| ||||||||||| |||||  ||| || ||
Sbjct: 64  aggagagcggattcttccctcaggaaagtcgtttttccaggtttgactccataaacaact 123

                                                                       
Query: 194 ccaaaggcgagagcgcagcaggatttgactcatcaaacagctcgagaaattttggccggt 253
           ||||||| ||||  | | | ||||| || ||| | || ||||| | |||||| || ||||
Sbjct: 124 ccaaaggtgagaatgtaactggattcgattcaccgaaaagctcaacaaatttcggtcggt 183

                                                                       
Query: 254 tcgattcttttgatgaagctgatcctttcggttccactgggccttttaaagcatcagg-a 312
           | |||||||||||||| || ||||| || ||||| | ||| || |||||||||||||| |
Sbjct: 184 ttgattcttttgatgatgccgatccatttggttcaagtggaccctttaaagcatcaggta 243

                                     
Query: 313 gcacggtcgccccccaaattctgata 338
           ||| |||| |||||||||||||||||
Sbjct: 244 gca-ggtctccccccaaattctgata 268
to top
>gb|AY105283.1| Zea mays PCO124753 mRNA sequence
          Length = 1399

 Score =  103 bits (52), Expect = 7e-19
 Identities = 259/326 (79%), Gaps = 4/326 (1%)
 Strand = Plus / Plus

                                                                        
Query: 17   ttctttgacgattccgttcca-gttcccctgcatacacgtctggattctcaccgaagttc 75
            |||||||| ||||| || ||| || ||||||||||||| ||||| ||||| || || |||
Sbjct: 784  ttctttgatgattctgtcccaagtacccctgcatacacatctgggttctctccaaaattc 843

                                                                        
Query: 76   ggtgaaagtcgtgacgacagctcctcctataacttcggaaggtttgattccttcagatcc 135
            |||||||| ||||| || |||||||| |||| ||| || | |||||||||||||||||||
Sbjct: 844  ggtgaaagccgtgatgatagctcctcttatagctttgggaagtttgattccttcagatcc 903

                                                                        
Query: 136  caggaca---gcgccgtcccacaggaaagtcgcttttccaggttcgactctgtaaccagc 192
            || ||||   |   | |||| ||||||||| | || |||||||| |||||  | | ||||
Sbjct: 904  caagacactgggttcttcccccaggaaagtggtttctccaggtttgactccattagcagc 963

                                                                        
Query: 193  tccaaaggcgagagcgcagcaggatttgactcatcaaacagctcgagaaattttggccgg 252
            ||||||||||||   | | ||||||| ||  ||   || ||||| ||||||||||| |||
Sbjct: 964  tccaaaggcgaggatgtatcaggattcgatacagggaatagctcaagaaattttggtcgg 1023

                                                                        
Query: 253  ttcgattcttttgatgaagctgatcctttcggttccactgggccttttaaagcatcagga 312
            || || ||||| |||||  | ||||| |||||||| |  || |||||||||||||| |||
Sbjct: 1024 tttgactctttcgatgacaccgatccgttcggttcgagcggaccttttaaagcatctgga 1083

                                      
Query: 313  gcacggtcgccccccaaattctgata 338
               ||||| || ||||| ||||||||
Sbjct: 1084 agccggtctccacccaagttctgata 1109
to top
>ref|XM_493822.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1323

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 89/103 (86%), Gaps = 1/103 (0%)
 Strand = Plus / Plus

                                                                        
Query: 15   cattctttgacgattccgttcca-gttcccctgcatacacgtctggattctcaccgaagt 73
            |||||||||| ||||| |||||| |||| ||||||||||| |||||||||||||| || |
Sbjct: 974  cattctttgatgattctgttccaagttcacctgcatacacatctggattctcaccaaaat 1033

                                                       
Query: 74   tcggtgaaagtcgtgacgacagctcctcctataacttcggaag 116
            || ||||||| || || || |||||||| |||||||| |||||
Sbjct: 1034 tcagtgaaagccgcgatgatagctcctcatataacttaggaag 1076



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 131/162 (80%)
 Strand = Plus / Plus

                                                                        
Query: 149  tcccacaggaaagtcgcttttccaggttcgactctgtaaccagctccaaaggcgagagcg 208
            |||| ||||||||||| ||||||||||| |||||  ||| || ||||||||| ||||  |
Sbjct: 1097 tccctcaggaaagtcgtttttccaggtttgactccataaacaactccaaaggtgagaatg 1156

                                                                        
Query: 209  cagcaggatttgactcatcaaacagctcgagaaattttggccggttcgattcttttgatg 268
             | | ||||| || ||| | || ||||| | |||||| || ||||| |||||||||||||
Sbjct: 1157 taactggattcgattcaccgaaaagctcaacaaatttcggtcggtttgattcttttgatg 1216

                                                      
Query: 269  aagctgatcctttcggttccactgggccttttaaagcatcag 310
            | || ||||| || ||||| | ||| || |||||||||||||
Sbjct: 1217 atgccgatccatttggttcaagtggaccctttaaagcatcag 1258
to top
>emb|AL596326.5| Human DNA sequence from clone RP11-373J16 on chromosome 1 Contains the
             3' end of a novel gene, a glyceraldehyde-3-phosphate
             dehydrogenase (GAPD) pseudogene and a CpG island, complete
             sequence
          Length = 178309

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 353   tatgaggatttgtctcttgaga 374
             ||||||||||||||||||||||
Sbjct: 40576 tatgaggatttgtctcttgaga 40597
to top
>gb|L43057.1|XELINTA3S Xenopus laevis integrin alpha 3 subunit mRNA, 3' end of cds
          Length = 4775

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 493  tgtgtgcatttttcctgtcctc 514
            ||||||||||||||||||||||
Sbjct: 2626 tgtgtgcatttttcctgtcctc 2647
to top
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 130     agatcccaggacagcgccgtc 150
               |||||||||||||||||||||
Sbjct: 3277832 agatcccaggacagcgccgtc 3277852
to top
>ref|NM_060296.2| Caenorhabditis elegans ZC247.2 (ZC247.2) mRNA, complete cds
          Length = 2329

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 257  attcttttgatgaagctgatc 277
            |||||||||||||||||||||
Sbjct: 2065 attcttttgatgaagctgatc 2045
to top
>dbj|BS000227.1| Pan troglodytes chromosome 22 clone:PTB-059D22, map 22, complete
             sequences
          Length = 148847

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 301   aaagcatcaggagcacggtcg 321
             |||||||||||||||||||||
Sbjct: 35666 aaagcatcaggagcacggtcg 35646
to top
>emb|Z80221.2|CEZC247 Caenorhabditis elegans Cosmid ZC247, complete sequence
          Length = 34321

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 257   attcttttgatgaagctgatc 277
             |||||||||||||||||||||
Sbjct: 18600 attcttttgatgaagctgatc 18620
to top
>ref|NM_020651.2| Homo sapiens pellino homolog 1 (Drosophila) (PELI1), mRNA
          Length = 7136

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  gcaggatttgactcatcaaa 230
            ||||||||||||||||||||
Sbjct: 4504 gcaggatttgactcatcaaa 4523
to top
>ref|XM_615035.2| PREDICTED: Bos taurus similar to pellino protein (LOC535054), mRNA
          Length = 1801

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 gcaggatttgactcatcaaa 230
           ||||||||||||||||||||
Sbjct: 643 gcaggatttgactcatcaaa 662
to top
>gb|AY915712.1| Schistosoma japonicum SJCHGC08867 protein mRNA, partial cds
          Length = 750

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 ataacttcggaaggtttgat 123
           ||||||||||||||||||||
Sbjct: 182 ataacttcggaaggtttgat 163
to top
>ref|XM_536015.2| PREDICTED: Canis familiaris similar to CG9410-PA, isoform A
           (LOC478853), mRNA
          Length = 1142

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 475 actcacttctgttcgccctg 494
           ||||||||||||||||||||
Sbjct: 58  actcacttctgttcgccctg 39
to top
>gb|AF461903.1| Homo sapiens FP7162 mRNA, complete cds
          Length = 2572

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 506 cctgtcctccatccccacgt 525
           ||||||||||||||||||||
Sbjct: 634 cctgtcctccatccccacgt 615
to top
>gb|BC063611.1| Homo sapiens pellino homolog 1 (Drosophila), mRNA (cDNA clone
           MGC:70885 IMAGE:4992160), complete cds
          Length = 3502

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 gcaggatttgactcatcaaa 230
           ||||||||||||||||||||
Sbjct: 854 gcaggatttgactcatcaaa 873
to top
>ref|XM_538508.2| PREDICTED: Canis familiaris similar to pellino protein (LOC481388),
           mRNA
          Length = 3112

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 gcaggatttgactcatcaaa 230
           ||||||||||||||||||||
Sbjct: 475 gcaggatttgactcatcaaa 494
to top
>gb|AC123807.4| Mus musculus BAC clone RP24-157J13 from chromosome 13, complete sequence
          Length = 187710

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 118    tttgattccttcagatcccaggac 141
              |||| |||||||||||||||||||
Sbjct: 148896 tttgtttccttcagatcccaggac 148873
to top
>gb|AY364257.1| Homo sapiens clone peg2514 pellino (PELI1) mRNA, complete cds
          Length = 1917

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 gcaggatttgactcatcaaa 230
           ||||||||||||||||||||
Sbjct: 466 gcaggatttgactcatcaaa 485
to top
>gb|BC050533.1| Homo sapiens pellino homolog 1 (Drosophila), mRNA (cDNA clone
           IMAGE:6187655)
          Length = 3511

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 gcaggatttgactcatcaaa 230
           ||||||||||||||||||||
Sbjct: 862 gcaggatttgactcatcaaa 881
to top
>emb|AL590822.36| Human DNA sequence from clone RP11-181G12 on chromosome 1 Contains the
             3' end of the PRKCZ gene for protein kinase C zeta, a
             novel gene, a novel gene (FLJ31031), the SKI gene for
             v-ski sarcoma viral oncogene homolog (avian) and five CpG
             islands, complete sequence
          Length = 179836

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 506   cctgtcctccatccccacgt 525
             ||||||||||||||||||||
Sbjct: 58141 cctgtcctccatccccacgt 58160
to top
>emb|AL445237.16| Human DNA sequence from clone RP13-238F13 on chromosome 10 Contains the
              OAT gene for ornithine aminotransferase (gyrate atrophy), a
              homeobox protein pseudogene, the 5' end of the LHPP gene
              for phospholysine phosphohistidine inorganic pyrophosphate
              phosphatase, a RPS10 (40S ribosomal protein 10) pseudogene
              and four CpG islands, complete sequence
          Length = 182955

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    ccactgggccttttaaagca 306
              ||||||||||||||||||||
Sbjct: 116430 ccactgggccttttaaagca 116449
to top
>emb|AL441985.9| Human DNA sequence from clone RP11-417D4 on chromosome X Contains a
             pseudogene similar to part of ubiquitin-conjugating enzyme
             E2, complete sequence
          Length = 185969

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   ccaaattctgatattcattt 345
             ||||||||||||||||||||
Sbjct: 52499 ccaaattctgatattcattt 52518
to top
>gb|AC164578.5| Mus musculus  BAC RP23-15E20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 225564

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    gattccttcagatcccagga 140
              ||||||||||||||||||||
Sbjct: 165884 gattccttcagatcccagga 165865
to top
>gb|AF300987.1| Homo sapiens pellino related intracellular signalling molecule
           (PRISM) mRNA, complete cds
          Length = 1503

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 gcaggatttgactcatcaaa 230
           ||||||||||||||||||||
Sbjct: 481 gcaggatttgactcatcaaa 500
to top
>gb|BC050019.1| Homo sapiens pellino homolog 1 (Drosophila), mRNA (cDNA clone
           MGC:50990 IMAGE:5296990), complete cds
          Length = 3571

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 gcaggatttgactcatcaaa 230
           ||||||||||||||||||||
Sbjct: 880 gcaggatttgactcatcaaa 899
to top
>gb|BC042957.1| Homo sapiens cDNA clone IMAGE:5278322
          Length = 1145

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 570 atttttctctgtttatagtg 589
           ||||||||||||||||||||
Sbjct: 226 atttttctctgtttatagtg 245
to top
>dbj|AK126870.1| Homo sapiens cDNA FLJ44922 fis, clone BRAMY3011865
          Length = 3572

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 506  cctgtcctccatccccacgt 525
            ||||||||||||||||||||
Sbjct: 2276 cctgtcctccatccccacgt 2257
to top
>dbj|AK027668.1| Homo sapiens cDNA FLJ14762 fis, clone NT2RP3003491, weakly similar
           to Drosophila melanogaster Pelle associated protein
           Pellino (Pli) mRNA
          Length = 2866

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 gcaggatttgactcatcaaa 230
           ||||||||||||||||||||
Sbjct: 237 gcaggatttgactcatcaaa 256
to top
>gb|AC008453.6| Homo sapiens chromosome 5 clone CTC-345K18, complete sequence
          Length = 145064

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 336    atattcatttgtggaattat 355
              ||||||||||||||||||||
Sbjct: 134222 atattcatttgtggaattat 134203
to top
>gb|AC011383.6| Homo sapiens chromosome 5 clone CTB-140J7, complete sequence
          Length = 93407

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   atattcatttgtggaattat 355
             ||||||||||||||||||||
Sbjct: 58484 atattcatttgtggaattat 58503
to top
>gb|AF302505.1|AF302505 Homo sapiens pellino 1 (PELI1) mRNA, complete cds
          Length = 7136

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  gcaggatttgactcatcaaa 230
            ||||||||||||||||||||
Sbjct: 4504 gcaggatttgactcatcaaa 4523
to top
>gb|AC116104.7| Mus musculus chromosome 5, clone RP23-18K20, complete sequence
          Length = 210459

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     aaagaagagcacattctttg 23
             ||||||||||||||||||||
Sbjct: 54548 aaagaagagcacattctttg 54529
to top
>gb|AC012368.6| Homo sapiens BAC clone RP11-547M24 from 2, complete sequence
          Length = 196206

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   gcaggatttgactcatcaaa 230
             ||||||||||||||||||||
Sbjct: 70578 gcaggatttgactcatcaaa 70559
to top
>emb|BX649152.1|HSM809304 Homo sapiens mRNA; cDNA DKFZp686C18116 (from clone DKFZp686C18116)
          Length = 4442

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  gcaggatttgactcatcaaa 230
            ||||||||||||||||||||
Sbjct: 1782 gcaggatttgactcatcaaa 1801
to top
>gb|AC005411.1|AC005411 Homo sapiens chromosome 17, clone hRPK.721_K_1, complete sequence
          Length = 163908

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 570    atttttctctgtttatagtg 589
              ||||||||||||||||||||
Sbjct: 104788 atttttctctgtttatagtg 104769
to top
>emb|AJ278859.1|HSA278859 Homo sapiens mRNA for Pellino protein (ORF1)
          Length = 1257

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 gcaggatttgactcatcaaa 230
           ||||||||||||||||||||
Sbjct: 466 gcaggatttgactcatcaaa 485
to top
>emb|CR392029.12| Zebrafish DNA sequence from clone DKEY-188H10 in linkage group 3,
             complete sequence
          Length = 130871

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 517   tccccacgtacaaagtggac 536
             ||||||||||||||||||||
Sbjct: 40206 tccccacgtacaaagtggac 40225


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,215,220
Number of Sequences: 3902068
Number of extensions: 5215220
Number of successful extensions: 93821
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93685
Number of HSP's gapped (non-prelim): 124
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top