ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags31n10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SEC3_YEAST (P33332) Exocyst complex component SEC3 (Protein PSL1) 33 0.43
2DYNA_DROME (P13496) 150 kDa dynein-associated polypeptide (DP-15... 31 1.2
3EXOC1_CAEEL (Q20678) Probable exocyst complex component 1 (Exocy... 30 2.1
4SPTB2_MOUSE (Q62261) Spectrin beta chain, brain 1 (Spectrin, non... 29 4.7
5SYE_METJA (Q58772) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 29 4.7
6SPTB2_HUMAN (Q01082) Spectrin beta chain, brain 1 (Spectrin, non... 29 4.7
7RAD50_METKA (Q8TXI4) DNA double-strand break repair rad50 ATPase 28 8.1

>SEC3_YEAST (P33332) Exocyst complex component SEC3 (Protein PSL1)|
          Length = 1336

 Score = 32.7 bits (73), Expect = 0.43
 Identities = 12/33 (36%), Positives = 24/33 (72%)
 Frame = +3

Query: 123 LRIFNLKLRHMREDISSIESRNNGLEMQSVNNK 221
           L +F +++ +   DI ++ES++NGL+++S N K
Sbjct: 692 LSLFLMEMSNFSNDIENVESQDNGLQVESANKK 724



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>DYNA_DROME (P13496) 150 kDa dynein-associated polypeptide (DP-150) (DAP-150)|
           (Protein glued)
          Length = 1265

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = +3

Query: 63  EEVLQGIDAASATIDDMDEWLRIFNLKLRHMREDISSIESRNNGLEMQSVNNKGL 227
           +EVL+  DAA  TI D D+ +  F   ++ + + ++ +  RN+  E +S+ +  L
Sbjct: 520 KEVLRERDAAIETIYDRDQTIVKFRELVQKLNDQLTELRDRNSSNEKESLQDPSL 574



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>EXOC1_CAEEL (Q20678) Probable exocyst complex component 1 (Exocyst complex|
           component Sec3)
          Length = 848

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 17/68 (25%), Positives = 37/68 (54%)
 Frame = +3

Query: 24  ANVYQLLESEPLIEEVLQGIDAASATIDDMDEWLRIFNLKLRHMREDISSIESRNNGLEM 203
           AN+  +++SE  + ++L  IDAA   ++ +++ L   +  L  +R  I  IE +++   +
Sbjct: 204 ANINSMMDSENSVNQLLSSIDAALTGVESVEKELDRCDDILAFVRNSIELIEEKDSLSVV 263

Query: 204 QSVNNKGL 227
           +  N + L
Sbjct: 264 ERKNKQRL 271



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>SPTB2_MOUSE (Q62261) Spectrin beta chain, brain 1 (Spectrin, non-erythroid beta|
            chain 1) (Beta-II spectrin) (Fodrin beta chain)
          Length = 2363

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +3

Query: 36   QLLESEPLIEEVLQGIDAASATIDDMDEWLRIFNLKLRHMREDISSIESRNNGLEMQSVN 215
            Q L+    + ++    DA    ID+ ++WL   N+++    ED+  I+ R   LE +  N
Sbjct: 843  QALQDTLALYKMFSEADACELWIDEKEQWLN--NMQIPEKLEDLEVIQHRFESLEPEMNN 900

Query: 216  NKGLV 230
                V
Sbjct: 901  QASRV 905



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>SYE_METJA (Q58772) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 553

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +3

Query: 45  ESEPLIEEVLQGIDAASATIDDMDEWLRIFNLKLRHMREDISSIESRNNGLEMQSVNNK 221
           E  P++E+V++ ++  S     +DE       KL  + ED+   E +  GLE+ +V +K
Sbjct: 42  EVMPIVEKVVEEVNKLS-----LDE----IKKKLEELGEDVKKKEKKEKGLELPNVKDK 91



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>SPTB2_HUMAN (Q01082) Spectrin beta chain, brain 1 (Spectrin, non-erythroid beta|
            chain 1) (Beta-II spectrin) (Fodrin beta chain)
          Length = 2364

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +3

Query: 36   QLLESEPLIEEVLQGIDAASATIDDMDEWLRIFNLKLRHMREDISSIESRNNGLEMQSVN 215
            Q L+    + ++    DA    ID+ ++WL   N+++    ED+  I+ R   LE +  N
Sbjct: 843  QALQDTLALYKMFSEADACELWIDEKEQWLN--NMQIPEKLEDLEVIQHRFESLEPEMNN 900

Query: 216  NKGLV 230
                V
Sbjct: 901  QASRV 905



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>RAD50_METKA (Q8TXI4) DNA double-strand break repair rad50 ATPase|
          Length = 876

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 60  IEEVLQGIDAASATIDDMDEWLRIFNLKLRHMREDISSIESRNNGLE 200
           +E  L+G+     + D ++E L     K   +R+ +S ++ R NG+E
Sbjct: 642 VERNLEGLRERYGSEDRLEEELESVEKKYERVRDKLSEVKGRLNGME 688


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,349,068
Number of Sequences: 219361
Number of extensions: 1087324
Number of successful extensions: 2683
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2683
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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