>MOBL_THIFE (P20085) Mobilization protein mobL|
          Length = 378

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = +3

Query: 6   DHQASS*RGKDNRPTSTISEHVSIEVDRERNRIQAADSIESARSAAERGALAEAVTILED 185
           DH++ + RG +  PT  +    +  ++R R   ++    +  R A ER A A+A  +LE 
Sbjct: 217 DHRSHAKRGIEAEPTRHLGP-AAAGIER-RTGEESRRRHDFEREAMERLARAQAQGVLER 274

Query: 186 CRRRLSESFASRSGD-RLSLALDAELREMQER 278
             R L  S    SGD R +      LRE QER
Sbjct: 275 ESRGLERSIFDLSGDMRAAFQERDRLREQQER 306

>SPTN4_HUMAN (Q9H254) Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta|
            chain 3) (Beta-IV spectrin)
          Length = 2564

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 260  QLCVKGQGQTVPA-PACKGLR*SPPAVLQNGHSLSESTPLSSRPRRFDR 117
            QL  K  G  +PA P+    R  PP  L NG  L E TP   RPR  DR
Sbjct: 2329 QLQEKEAGPGLPAGPSLPQPRELPPGRLPNGLELPERTPRPDRPRARDR 2377

>SMC_MYCTU (Q10970) Chromosome partition protein smc|
          Length = 1205

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 4/178 (2%)
 Frame = +3

Query: 30   GKDNRPTSTISEHVSIEVDRERNRIQAADSIESARSAAERGALAEAVTILEDCRRRLSES 209
            G  +R  ST+   V+ E+D+ R+ + AA+++ +  +AA  GAL E               
Sbjct: 652  GGSDRKLSTLE--VTSEIDKARSELAAAEALAAQLNAALAGALTE--------------- 694

Query: 210  FASRSGDRLSLALDAELREMQERMASRQLYEASGRAYMLSGLSSHSWQR---ATTRGDST 380
              S   D    AL A L E    +++  +YE  GR    +  +   W R     T  ++ 
Sbjct: 695  -QSARQDAAEQAL-AALNESDTAISA--MYEQLGRLGQEARAAEEEWNRLLQQRTEQEAV 750

Query: 381  ESSTIVHSYQTPSMVQMLQHSQS-HIPSPPGQQXXXXXXXXXXXXXXXFVLAAKCADD 551
             + T+    Q  + ++  Q +Q   +  P  +Q                 LA + A++
Sbjct: 751  RTQTLDDVIQLETQLRKAQETQRVQVAQPIDRQAISAAADRARGVEVEARLAVRTAEE 808

>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 25/87 (28%), Positives = 34/87 (39%)
 Frame = +3

Query: 216 SRSGDRLSLALDAELREMQERMASRQLYEASGRAYMLSGLSSHSWQRATTRGDSTESSTI 395
           SRS  R    +       + R   R    A G  +  S  S  SW  + +R  S   S  
Sbjct: 433 SRSPARRGGYVPRRRSRSRSRSGDRYKRGARGPRHHSSSHSRSSWSLSPSRSRSVTRSGS 492

Query: 396 VHSYQTPSMVQMLQHSQSHIPSPPGQQ 476
               ++ S  Q    SQSH PSPP ++
Sbjct: 493 RSQSRSRSRSQSHSQSQSHSPSPPREK 519

>PIV6_ADE41 (P16139) Minor capsid protein 6 precursor (Minor capsid protein VI)|
           [Contains: Protease cofactor]
          Length = 266

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 228 PRSCLQRTQIISSGSPPEWSQPQREHPSQQQTSQIR*NQRPVCGSSR 88
           PR  L+ T ++ S  PP + Q  +E  S   T  I    RPV G  +
Sbjct: 151 PRPELEETLVVESREPPSYEQALKEGASYPMTRPIGSMARPVYGKEK 197

>SLAP_BACCI (P35824) S-layer-related protein precursor|
          Length = 1616

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 346  PGSERRHAGTRRRAA-PLFTPTRHHPWFRCYSTRRAISLRPRD 471
            PG ERRHAGTR     P F   R     R    RR   LRP++
Sbjct: 1347 PGGERRHAGTRHAGCFPCFAENRR----RNKRNRRLRKLRPKN 1385

>MAD4_MOUSE (Q60948) Max-interacting transcriptional repressor MAD4|
           (Max-associated protein 4) (MAX dimerization protein 4)
          Length = 209

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 536 GCQDETLQLPCRRPGWPGM 480
           GC D +   PCRRPG PG+
Sbjct: 190 GCSDSSYGHPCRRPGCPGL 208

>GOGA3_MOUSE (P55937) Golgin subfamily A member 3 (Golgin-160) (Male-enhanced|
            antigen 2) (MEA-2)
          Length = 1487

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = +3

Query: 63   EHVSIEVDRERNRIQAADSIESARSAAERGALAEAVTILEDCRRRLSESFA-----SRSG 227
            EH+   +  E + +Q  D   S   A  +  LAEA T L+  +++L E  +     S+  
Sbjct: 1223 EHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEM 1282

Query: 228  DRLSLALDAELREMQERMASRQLYEASGR 314
            + L   LD + RE+Q       L E  G+
Sbjct: 1283 EDLKWELDQKEREIQSLKQQLDLTEQQGK 1311

>IRX6_MOUSE (Q9ER75) Iroquois-class homeodomain protein IRX-6 (Iroquois|
           homeobox protein 6) (Homeodomain protein IRXB3)
          Length = 438

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 480 VAAVPGAKGYGSASAVTSEPWMVSGRSEQWCCSPSSPRVSSLAARNANSVQIACTP 313
           +A  P    YGS S      ++VS  S   CC  +   VS +A+ + ++  + CTP
Sbjct: 1   MAFSPFGHPYGSTSQ-----FLVSASSSATCCETAPRSVSDVASASTSASTLCCTP 51

>VL2_HPV19 (P36752) Minor capsid protein L2|
          Length = 520

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 398 SLLPDTIHGSDVTALAEPYPFAPGTAATCPATQAVG 505
           SL+PDTI  SD+  +    P  P T++  P T+A G
Sbjct: 89  SLVPDTIGPSDIIPVDTLNPVEPTTSSIVPLTEASG 124

>CH602_RHOBA (Q7UM97) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2)|
          Length = 540

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
 Frame = +3

Query: 51  STISEHVSIEVDRERNRIQAADSIESARSAAERGALAEAVTILEDCRRRLSESFASRSGD 230
           + IS     E + ++ + +  D++ + R+A E G L      L  CR  +  +     GD
Sbjct: 376 AVISVGAETEAEMKQTKARLEDALHATRAAVEEGILPGGGVALVHCREAVEAAKKKAKGD 435

Query: 231 R------LSLALDAELREMQE 275
                  +  ALDA +R++ +
Sbjct: 436 EKIGVDIVLGALDAPMRQIAD 456

>POL_HTLV2 (P03363) Pol polyprotein [Contains: Reverse|
           transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
           (RT); Integrase (IN)]
          Length = 982

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
 Frame = -1

Query: 278 PLLHLPQLCV--KGQGQTVPAPACKGLR*SPPAVLQNGHS----------LSESTPLSSR 135
           PL H  Q+    KG+  T+P  +    R  PP +  N HS           S S P+S +
Sbjct: 59  PLRHPQQMDHHWKGRPTTMPGASIPPRRPQPPPIAANSHSKHHRPRTPSPTSPSGPISFK 118

Query: 134 PRRFDRISGLYAVPLAVNLNGYMFRYGG 51
           P R   ++ L +  L     G++  Y G
Sbjct: 119 PERLQALNDLVSKALEA---GHIEPYSG 143

>APSB_EMENI (O60039) Anucleate primary sterigmata protein B|
          Length = 1051

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 42/142 (29%), Positives = 57/142 (40%), Gaps = 26/142 (18%)
 Frame = +3

Query: 63  EHVSIEVDRERNRIQAADSIESARSAAERGALAEAVTILEDCRRRLSESFASRSGDRLSL 242
           E   +E++R R+        ES    +E+  LAE +  L D R   S+S A    D    
Sbjct: 114 ETYELEIERLRS--------ESIARESEKRRLAEMLKSLNDGRPTGSDSGAREERDMWKD 165

Query: 243 ALDAE-------------LREMQERMASRQLYEASGRAYMLSG-------LSSHS----- 347
            LDAE             LRE   R+ S   Y  +  A + SG       L SHS     
Sbjct: 166 MLDAETAAREQADEENKRLREELMRVRSEATYAIAPAAPLRSGHRNRGDSLVSHSAVSDR 225

Query: 348 -WQRATTRGDSTESSTIVHSYQ 410
              R T  G S+ SST+V  ++
Sbjct: 226 ELYRNTAAG-SSSSSTLVMEFE 246

>ACSL3_HUMAN (O95573) Long-chain-fatty-acid--CoA ligase 3 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 3) (LACS 3)
          Length = 720

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 544 AHLAAKTKRFNYLADGLGGRACGCCPGGEGIWLCECCNI*TMDGVW 407
           A L+A T+RF  +        C CCP G+G  L E     T+  VW
Sbjct: 453 APLSATTQRFMNI--------CFCCPVGQGYGLTESAGAGTISEVW 490

>HCN1_MOUSE (O88704) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 1 (Brain cyclic nucleotide
           gated channel 1) (BCNG-1) (Hyperpolarization-activated
           cation channel 2) (HAC-2)
          Length = 910

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -3

Query: 255 LRQGPRTDGPRSCLQRTQIISSGSPPEWSQPQREHPSQQQTSQIR*NQRPVCGSSRGQPQ 76
           L Q P+   P+S +Q+TQ  +     +  Q Q++   QQQ  Q +  Q+      + QPQ
Sbjct: 718 LMQQPQQQLPQSQVQQTQTQTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQ 777

>SSB_PROVU (Q8L2A6) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 195

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 195 SSGSPPEWSQPQREHPSQQQTSQIR*NQRPVCGSSRGQPQ 76
           ++GS   W QPQ+  P+  QT   + NQR      + QPQ
Sbjct: 126 NAGSNQGWGQPQQPQPNNNQTPAQQLNQR---SQGQNQPQ 162

>CEND1_MOUSE (Q8BZ05) Centaurin-delta 1 (Cnt-d1)|
          Length = 1703

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 27/109 (24%), Positives = 44/109 (40%)
 Frame = +3

Query: 69  VSIEVDRERNRIQAADSIESARSAAERGALAEAVTILEDCRRRLSESFASRSGDRLSLAL 248
           V  E    RN I    SI   R         E + I  + +  L++  AS S      + 
Sbjct: 360 VKEEAATTRNSILTQSSIYDNRKEKVSEDKVEDIWIPREDKNNLAQDSASES----EYST 415

Query: 249 DAELREMQERMASRQLYEASGRAYMLSGLSSHSWQRATTRGDSTESSTI 395
             E  +   R  S+     + +A+ L   + HS+  ++T G++  SSTI
Sbjct: 416 VEECFQSLRRKNSKASKSRTQKAFYLDPFNRHSYPLSSTSGNTEPSSTI 464

>VL2_HPV20 (P50794) Minor capsid protein L2|
          Length = 518

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 398 SLLPDTIHGSDVTALAEPYPFAPGTAATCPATQAVG 505
           +L+PDTI  SD+  +    P  P T++  P T++ G
Sbjct: 90  ALVPDTIGPSDIIPVDTLNPVEPSTSSIVPLTESTG 125

>CP26C_HUMAN (Q6V0L0) Cytochrome P450 26C1 (EC 1.14.-.-)|
          Length = 522

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -2

Query: 571 LRQHPSPSSAHLAAKTKRFNYLADGLGGRACGCCPGGEG 455
           L QHP+      A    R   +A GLG RACGC PG  G
Sbjct: 312 LLQHPA------AIAKIREELVAQGLG-RACGCAPGAAG 343

>P54_ENTFC (P13692) Protein P54 precursor|
          Length = 516

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 1/119 (0%)
 Frame = +3

Query: 123 ESARSAAERGALAEAVTILEDCRRRLSESFASRSGDRLSLALDAELREMQERMASRQLYE 302
           + A + AE+  + E   + E  R++ ++  A +     + A  A+ + +     +    E
Sbjct: 220 KKAEAEAEQARIREQARLAEQARQQAAQEKAEKEAREQAAAQAAQTQALSSASTTT---E 276

Query: 303 ASGRAYMLSGLSSHSWQRATTRGDSTESSTIVHSYQT-PSMVQMLQHSQSHIPSPPGQQ 476
           +S  A   S  S       T    STESST   +  T  S  +     +S +P    Q+
Sbjct: 277 SSSAAQSSSEESKAPESSTTEESTSTESSTTTENSSTGSSSTESSSTEESTVPESSTQE 335

>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch|
          Length = 5412

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 16/151 (10%)
 Frame = +3

Query: 33   KDNRPTSTISEHVSIEVDRERNR---------IQAADSIESARSAAERGALA-----EAV 170
            K  R   ++   V +E++ E++          I+  D IE +  A  R  +      E+V
Sbjct: 4304 KSTRDEKSLEISVKVEIESEKSSPDQKSGPISIEEKDKIEQSEKAQLRQGILTSSRPESV 4363

Query: 171  TILEDCRRRLSESFASRSGDRLSLALD--AELREMQERMASRQLYEASGRAYMLSGLSSH 344
                +     S+S AS     + L+    AE     E +AS    + S +    S  +S 
Sbjct: 4364 ASQPESVPSPSQSAASHEHKEVELSESHKAEKSSRPESVAS----QVSEKDMKTSRPASS 4419

Query: 345  SWQRATTRGDSTESSTIVHSYQTPSMVQMLQ 437
            + Q +T  GD   + +++HS  T   V+  Q
Sbjct: 4420 TSQFSTKEGDEETTESLLHSLTTTETVETKQ 4450

>KINL_LEICH (P46865) Kinesin-like protein K39 (Fragment)|
          Length = 955

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
 Frame = +3

Query: 51   STISEHVSIEVDRERNRIQAADSI-ESARSAAERGALAEAVTILEDCRRRLSESFASRSG 227
            ST +  +S E DRE  R      + +S   AAE  +  E+ T         ++  A +  
Sbjct: 802  STTAAKMSAEQDRESTRATLEQQLRDSEERAAELASQLESTTA--------AKMSAEQDR 853

Query: 228  DRLSLALDAELREMQERMASRQLYEASGRAYMLSGLSSHSWQRAT 362
            +     L+ +LRE +ER A       S  A  +S        RAT
Sbjct: 854  ESTRATLEQQLRESEERAAELASQLESTTAAKMSAEQDRESTRAT 898

>KCNC3_MOUSE (Q63959) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 769

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -3

Query: 213 QRTQIISSGSPPEWSQPQREHPSQQQTSQIR*NQRPVCGSSRGQPQWI 70
           Q+ Q + +  PPE S P    P QQQ SQ      P  G S G P ++
Sbjct: 19  QQPQPVPTPQPPESSPPPLPPPQQQQCSQ------PGTGPSPGVPAFL 60

>FBX38_MOUSE (Q8BMI0) F-box only protein 38 (Modulator of KLF7 activity) (MoKA)|
          Length = 1194

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
 Frame = +3

Query: 198 LSESFASRSGDRLSLALDAEL---REMQERMASRQLYEASGRAYMLSGLSSHSWQRATTR 368
           L ES   +     S  + A++   R++ E+  S+ +Y +          SS S   A+T 
Sbjct: 667 LEESSCEKGCQVTSEQIKADMKAARDVSEKKKSKDVYPSCS--------SSSSSTAASTA 718

Query: 369 GDSTESSTIVHSYQTPSMVQMLQHSQSHIPSPP 467
           G+++  ST   + Q+P   + +  S S  PSPP
Sbjct: 719 GNASSPST---ASQSPDFARTVTSSGSSEPSPP 748

>ACSL3_RAT (Q63151) Long-chain-fatty-acid--CoA ligase 3 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 3) (LACS 3) (Brain
           acyl-CoA synthtase II)
          Length = 720

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 544 AHLAAKTKRFNYLADGLGGRACGCCPGGEGIWLCECCNI*TMDGVW 407
           A L+A T+RF  +        C CCP G+G  L E     T+  VW
Sbjct: 453 APLSATTQRFMNI--------CFCCPVGQGYGLTESTGAGTITEVW 490

>ACSL3_MOUSE (Q9CZW4) Long-chain-fatty-acid--CoA ligase 3 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 3) (LACS 3)
          Length = 720

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 544 AHLAAKTKRFNYLADGLGGRACGCCPGGEGIWLCECCNI*TMDGVW 407
           A L+A T+RF  +        C CCP G+G  L E     T+  VW
Sbjct: 453 APLSATTQRFMNI--------CFCCPVGQGYGLTESTGAGTITEVW 490

>ACSL4_RAT (O35547) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 4) (LACS 4)
          Length = 670

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 312 RAYMLSGLSSHSWQRATTRGDSTESSTIVHSYQTPSMVQMLQHSQSHIPSPPG 470
           RA    GL  HS Q     G   E+S+I  S  TPS + ++ ++      P G
Sbjct: 194 RAEYPEGLEIHSMQSVEELGSKPENSSIPPSRPTPSDMAIVMYTSGSTGRPKG 246


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,563,941
Number of Sequences: 219361
Number of extensions: 2041461
Number of successful extensions: 7420
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 6947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7408
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)