ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags31n06 |
|---|---|
| Clone Library Name | barley_pub |
>PIGS_MOUSE (Q6PD26) GPI transamidase component PIG-S| (Phosphatidylinositol-glycan biosynthesis, class S protein) Length = 554 Score = 88.6 bits (218), Expect = 1e-17 Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 3/184 (1%) Frame = +1 Query: 70 VLQFVVYIPSARECPLYLQLPDGELSKTNAFISPMWGGVVIWNPPGCSLGSKEVHGTRRQ 249 VL F++Y+P PLY+Q DG TNAF SP WGG++++N + E+ R + Sbjct: 320 VLHFLLYVPELAHSPLYIQDKDGAPVATNAFHSPRWGGIMVYNVDPKIYNASEL-PVRVE 378 Query: 250 MSSQELMETLEIFIGQLRQLFGLKPNYHAQGMDVATKFLVS---EKGFAQWELDLLYRHH 420 + +++ +E+F+ QLR LFG+ V K L+S +G WELD L Sbjct: 379 V---DMVRVMEVFLAQLRLLFGIAQ------PQVPPKCLLSGPKSEGLMTWELDRLLWAR 429 Query: 421 ACSNLLSCVATLESLSSLVQSLPRMIVMDEIGRQVELSLEAASLAQRNATLGIGDSSAVS 600 + NL + TL SL+ L+ + +++ D++ +V ++ A A + LG S+ + Sbjct: 430 SVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYRAVAAVQKAAKALALGHLSSAFAA 489 Query: 601 ATRA 612 + A Sbjct: 490 SQEA 493
>PIGS_RAT (Q5XI31) GPI transamidase component PIG-S| (Phosphatidylinositol-glycan biosynthesis, class S protein) Length = 554 Score = 87.8 bits (216), Expect = 2e-17 Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 3/184 (1%) Frame = +1 Query: 70 VLQFVVYIPSARECPLYLQLPDGELSKTNAFISPMWGGVVIWNPPGCSLGSKEVHGTRRQ 249 VL F++Y+P PLY+Q DG TNAF SP WGG++++N + E+ R + Sbjct: 320 VLNFLLYVPELAHSPLYIQDKDGAPVATNAFHSPRWGGIMVYNVDPKIYNASEL-PVRVE 378 Query: 250 MSSQELMETLEIFIGQLRQLFGLKPNYHAQGMDVATKFLVS---EKGFAQWELDLLYRHH 420 + ++ + +E+F+ QLR LFG+ V K L+S +G WELD L Sbjct: 379 V---DMAQVMEVFLAQLRLLFGIAQ------PQVPPKCLLSGPKSEGLMTWELDRLLWAR 429 Query: 421 ACSNLLSCVATLESLSSLVQSLPRMIVMDEIGRQVELSLEAASLAQRNATLGIGDSSAVS 600 + NL + TL SL+ L+ + +++ D++ +V ++ A A LG S+ + Sbjct: 430 SVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYRAVAAVQKAAEALALGHLSSAFAA 489 Query: 601 ATRA 612 + A Sbjct: 490 SQEA 493
>PIGS_HUMAN (Q96S52) GPI transamidase component PIG-S| (Phosphatidylinositol-glycan biosynthesis, class S protein) Length = 554 Score = 85.5 bits (210), Expect = 1e-16 Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 4/185 (2%) Frame = +1 Query: 70 VLQFVVYIPSARECPLYLQLPDGELSKTNAFISPMWGGVVIWNPPGCSLGSKEVHGTRRQ 249 VL F++Y+P PLY+Q DG TNAF SP WGG++++N + SK + + Sbjct: 320 VLNFLLYVPELAHSPLYIQDKDGAPVATNAFHSPRWGGIMVYN-----VDSKTYNASVLP 374 Query: 250 MSSQ-ELMETLEIFIGQLRQLFGLKPNYHAQGMDVATKFLVS---EKGFAQWELDLLYRH 417 + + +++ +E+F+ QLR LFG+ + K L+S +G WELD L Sbjct: 375 VRVEVDMVRVMEVFLAQLRLLFGIAQ------PQLPPKCLLSGPTSEGLMTWELDRLLWA 428 Query: 418 HACSNLLSCVATLESLSSLVQSLPRMIVMDEIGRQVELSLEAASLAQRNATLGIGDSSAV 597 + NL + TL SL+ L+ + +++ D++ +V ++ A + G S+ V Sbjct: 429 RSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYKAVAAVQKSAEELASGHLASAFV 488 Query: 598 SATRA 612 ++ A Sbjct: 489 ASQEA 493
>PIGS_SCHPO (Q10351) GPI transamidase component PIG-S homolog| Length = 554 Score = 49.7 bits (117), Expect = 7e-06 Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 5/197 (2%) Frame = +1 Query: 46 FQLQXRSKVLQFVVYIPSARECPLYLQLPDGELSKTNAFISPMWGGVVIWNPPGCSLGSK 225 F R + FV+Y+PS + PL+L+ D + TN+ + P WG + N ++ K Sbjct: 323 FSPHIREPTIHFVLYVPSPQIQPLWLENEDSNIIPTNSMLLPQWGSITTIN---FNVTEK 379 Query: 226 EVHGTRRQMSSQELMETLEIFIGQLRQLFGLKPNYHAQGMDVATKFLVSEKGFAQWELDL 405 ++ + +L + + L L G+ DV L + D Sbjct: 380 KL------LHDVDLKDYFRVISRDLLLLLGIN--------DVPVSSLSATLA------DR 419 Query: 406 LYRHHACSNLLSCVATLESLSSLVQSLPRMIVMDEIGRQVE---LSLEAA--SLAQRNAT 570 L R + + TL++L+ LV S+ M V EI V+ LSL+ A +L+Q N Sbjct: 420 LLRQRIAESCIEASDTLQNLAKLVHSMQSMAVPKEIQMYVKDTLLSLDMAYKALSQNNLN 479 Query: 571 LGIGDSSAVSATRARAL 621 + S+ + AL Sbjct: 480 EALSYSNNAFSKSQEAL 496
>CNTN5_BRARE (Q7ZW34) Contactin-5 precursor| Length = 1056 Score = 33.1 bits (74), Expect = 0.68 Identities = 21/66 (31%), Positives = 36/66 (54%) Frame = +1 Query: 187 VIWNPPGCSLGSKEVHGTRRQMSSQELMETLEIFIGQLRQLFGLKPNYHAQGMDVATKFL 366 V+W PP LG + + ++S + +E E+ G+ ++ G + N G+D T++L Sbjct: 850 VLWKPPSPGLGRPQGY----EVSFWKDVEQEEL--GKKKRTLGNETNMLLSGLDGNTQYL 903 Query: 367 VSEKGF 384 VS KGF Sbjct: 904 VSVKGF 909
>TR11B_HUMAN (O00300) Tumor necrosis factor receptor superfamily member 11B| precursor (Osteoprotegerin) (Osteoclastogenesis inhibitory factor) Length = 401 Score = 33.1 bits (74), Expect = 0.68 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 4/112 (3%) Frame = +1 Query: 166 SPMWGGVVIWNPPGCSLGSKEVHGTRRQMSSQELMETLEIFIGQLRQLFGLKPNYHAQGM 345 +P W V++ N PG + ++ V +RQ SSQE +T QL +L+ + + Sbjct: 216 TPNWLSVLVDNLPGTKVNAESVERIKRQHSSQE--QTF-----QLLKLW----KHQNKDQ 264 Query: 346 DVATKFLVSEKGFAQWELDL----LYRHHACSNLLSCVATLESLSSLVQSLP 489 D+ K + ++DL + RH +NL T E L SL++SLP Sbjct: 265 DIVKKII--------QDIDLCENSVQRHIGHANL-----TFEQLRSLMESLP 303
>PALY_AMAMU (O93967) Phenylalanine ammonia-lyase (EC 4.3.1.5)| Length = 740 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%) Frame = +1 Query: 325 NYHAQGMDVATKFLVSEKGFAQWELDLLYRHHACSNLLSCVA------TLESLSSLVQS 483 NYHA+G+D+AT V+E + H+ N L+ ++ +LE L+SL+ S Sbjct: 480 NYHAKGLDIATAAYVAEATPGPTHIQSAEMHNQAVNSLALISARATITSLEVLTSLIAS 538
>NUOF1_RHIME (P56912) NADH-quinone oxidoreductase chain F 1 (EC 1.6.99.5) (NADH| dehydrogenase I, chain F 1) (NDH-1, chain F 1) Length = 434 Score = 30.8 bits (68), Expect = 3.4 Identities = 14/70 (20%), Positives = 31/70 (44%) Frame = +1 Query: 385 AQWELDLLYRHHACSNLLSCVATLESLSSLVQSLPRMIVMDEIGRQVELSLEAASLAQRN 564 A W L Y+H +C C E +++ + RM+ R++++ + + + Sbjct: 332 AIWRLSAFYKHESCG---QCTPCREGTGWMMRVMERMVQGRAQKREIDMLFDVTKQVEGH 388 Query: 565 ATLGIGDSSA 594 +GD++A Sbjct: 389 TICALGDAAA 398
>RIX7_YEAST (Q07844) Ribosome biogenesis ATPase RIX7| Length = 837 Score = 30.4 bits (67), Expect = 4.4 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%) Frame = +1 Query: 178 GGVVIWNPPGCS---LGSKEVHGTRRQMSSQELMETLEIFIGQ----LRQLF 312 GGV++W PPGC L + +R S + E L ++G+ +RQ+F Sbjct: 568 GGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVF 619
>LTBP2_MOUSE (O08999) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1813 Score = 30.4 bits (67), Expect = 4.4 Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 20/129 (15%) Frame = -1 Query: 416 CLYSKSNSHCANPF-SLTRNL-----------VATSMPC-----AW*FGFRPNNCLSCPM 288 C S N CANP SLT V + PC F N L CP Sbjct: 538 CYLSTVNGQCANPLGSLTSQEDCCGSVGTFWGVTSCAPCPPRQEGPAFPVIENGQLECPQ 597 Query: 287 KISRVSISSCDDI--CLRVP-CTSFEPSEQPGGFQITTPPHIGEINALVFESSPSGSCKY 117 R+++S C DI CL + C E G + T P L+ + S S Sbjct: 598 GYKRLNLSHCQDINECLTLGLCKDSECVNTRGSYLCTCRP------GLMLDPSRSRCVSD 651 Query: 116 KGHSLADGI 90 K S+ G+ Sbjct: 652 KAVSMQQGL 660
>LTBP2_RAT (O35806) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1764 Score = 29.6 bits (65), Expect = 7.6 Identities = 33/126 (26%), Positives = 44/126 (34%), Gaps = 17/126 (13%) Frame = -1 Query: 416 CLYSKSNSHCANPFSLTRNL------------VATSMPCAW*FGFR--PNNCLSCPMKIS 279 C S N CANP + V + PC F N L CP Sbjct: 540 CYLSTVNGQCANPLGELTSQEDCCGSVGTSWGVTSCAPCPPRPAFPVIENGQLECPQGYK 599 Query: 278 RVSISSCDDI--CLRVP-CTSFEPSEQPGGFQITTPPHIGEINALVFESSPSGSCKYKGH 108 R+++S C DI CL + C E G + T P L+ + S S K Sbjct: 600 RLNLSHCQDINECLTLGLCKDSECVNTRGSYLCTCRP------GLMLDPSRSRCVSDKAV 653 Query: 107 SLADGI 90 S+ G+ Sbjct: 654 SMKQGL 659
>TR11B_MOUSE (O08712) Tumor necrosis factor receptor superfamily member 11B| precursor (Osteoprotegerin) (Osteoclastogenesis inhibitory factor) Length = 401 Score = 29.6 bits (65), Expect = 7.6 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = +1 Query: 163 ISPMWGGVVIWNPPGCSLGSKEVHGTRRQMSSQELMETLEIFIGQLRQLFGLKPNYHAQG 342 I P W V++ + PG + ++ V +R+ SSQE +T ++ LK H Sbjct: 215 IIPNWLSVLVDSLPGTKVNAESVERIKRRHSSQE--QTFQL----------LKLWKHQNR 262 Query: 343 MDVATKFLVSEKGFAQWELDLLYRHHACSNLLSCVATLESLSSLVQSLP-RMIVMDEIGR 519 K ++ + + + RH SNL T E L +L++SLP + I +EI R Sbjct: 263 DQEMVKKIIQDIDLCE---SSVQRHLGHSNL-----TTEQLLALMESLPGKKISPEEIER 314
>HEPA_HHV2H (P89431) DNA helicase/primase complex-associated protein| Length = 752 Score = 29.6 bits (65), Expect = 7.6 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = -1 Query: 614 LALVADTAEESPIPRVAFLWAKLAASRESSTCLPISSITIILGSDWTKLERD 459 LAL A AE P WA+LAA R+S C +S+ + + + + R+ Sbjct: 163 LALSARVAEH---PGARLAWARLAAIRDSPQCASSASLAVTITTRTARFARE 211
>MET_CALMO (Q2QLC0) Hepatocyte growth factor receptor precursor (EC 2.7.10.1)| (HGF receptor) (Scatter factor receptor) (SF receptor) (HGF/SF receptor) (Met proto-oncogene tyrosine kinase) (c-Met) Length = 1381 Score = 29.6 bits (65), Expect = 7.6 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Frame = -1 Query: 338 CAW*FGFRPNNCLSCPMKISRVSISSCDDICLRVPCTSFEPSEQPGGFQITTPPHIGE-I 162 C W FGFR NN +K +RV + + CT + T P + E Sbjct: 584 CGWDFGFRRNN--KFDLKKTRVLLGN-------ESCTLTSSESTMNTLKCTIGPAMNEHF 634 Query: 161 NALVFESSPSGSCKYKGHSLADGIYTT 81 N + S+ G+ +Y S D I T+ Sbjct: 635 NMSIIISNSHGTTQYSTFSYVDPIITS 661
>IF2_STAS1 (Q49X54) Translation initiation factor IF-2| Length = 701 Score = 29.6 bits (65), Expect = 7.6 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Frame = +1 Query: 463 LSSLVQSLPRMIVMDEIGRQVELSLE-----AASLAQRNATLGIGDSSAVSATRAR 615 L+S VQ L + +G +E L+ +ASL +N TL +GDS V T R Sbjct: 364 LTSEVQELKANPEKNAVGTVIEAELDKSRGPSASLLVQNGTLNVGDSLVVGNTYGR 419
>NHR9_CAEEL (Q23489) Nuclear hormone receptor family member nhr-9| Length = 332 Score = 29.3 bits (64), Expect = 9.9 Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 3/94 (3%) Frame = -1 Query: 404 KSNSHCANPFSL-TRNLVATSMPCAW*FGFRPNNCLSCPMKISRVSISSCDDICLRVPCT 228 KS C N + T NL+ T C R N CL M+I S DDI + Sbjct: 45 KSEKFCINNDNCDTSNLILTCRQC------RYNKCLKMGMRIVTNQYDSLDDIIKVLAKW 98 Query: 227 SFEPSEQPGGFQITTPPHIGEI--NALVFESSPS 132 + + S + FQ P + ++ VF PS Sbjct: 99 NLDRSNKLMNFQCFEDPTLDQVIQKHPVFTKKPS 132
>TR11B_RAT (O08727) Tumor necrosis factor receptor superfamily member 11B| precursor (Osteoprotegerin) Length = 401 Score = 29.3 bits (64), Expect = 9.9 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 1/120 (0%) Frame = +1 Query: 163 ISPMWGGVVIWNPPGCSLGSKEVHGTRRQMSSQELMETLEIFIGQLRQLFGLKPNYHAQG 342 I P W V++ + PG + ++ V +R+ SSQE +T ++ LK H Sbjct: 215 IIPNWLSVLVDSLPGTKVNAESVERIKRRHSSQE--QTFQL----------LKLWKHQNR 262 Query: 343 MDVATKFLVSEKGFAQWELDLLYRHHACSNLLSCVATLESLSSLVQSLP-RMIVMDEIGR 519 K ++ + + + RH +NL T E L L++SLP + I DEI R Sbjct: 263 DQEMVKKIIQDIDLCE---SSVQRHIGHANL-----TTEQLRILMESLPGKKISPDEIER 314
>HEPA_HHV11 (P10192) DNA helicase/primase complex-associated protein| Length = 750 Score = 29.3 bits (64), Expect = 9.9 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -1 Query: 614 LALVADTAEESPIPRVAFLWAKLAASRESSTCLPISSITI 495 +AL A AE P WA+LAA R++ C +S+T+ Sbjct: 163 MALAARVAEH---PDARLAWARLAAIRDTPQCASAASLTV 199
>MET_HORSE (Q2QLA9) Hepatocyte growth factor receptor precursor (EC 2.7.10.1)| (HGF receptor) (Scatter factor receptor) (SF receptor) (HGF/SF receptor) (Met proto-oncogene tyrosine kinase) (c-Met) Length = 1381 Score = 29.3 bits (64), Expect = 9.9 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Frame = -1 Query: 338 CAW*FGFRPNNCLSCPMKISRVSISSCDDICLRVPCTSFEPSEQPGGFQITTPPHIGE-I 162 C W FGFR NN L K ++V + + CT + T P + E Sbjct: 584 CGWDFGFRKNNKLD--SKKTKVLLGN-------ESCTLTLSESTSNTLKCTVGPAMNERF 634 Query: 161 NALVFESSPSGSCKYKGHSLADGIYTT 81 N + S+ G+ +Y S D I T+ Sbjct: 635 NISITVSNSRGTARYSTFSYVDPIITS 661 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,098,694 Number of Sequences: 219361 Number of extensions: 2335846 Number of successful extensions: 5912 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5695 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5906 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
