ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags31n04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome... 117 3e-23
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
3dbj|AK068419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
4dbj|AK067065.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
5dbj|AK100493.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 8e-21
6gb|AY105056.1| Zea mays PCO069465 mRNA sequence 60 6e-06
7gb|AC113291.16| Mus musculus chromosome 9, clone RP23-417K23, co... 46 0.097
8gb|AC121813.3| Mus musculus BAC clone RP23-457E5 from 9, complet... 46 0.097
9emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete ... 42 1.5
10gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 42 1.5
11gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genom... 40 6.0
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.0
13gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genom... 40 6.0
14gb|AE012367.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.0
15dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 40 6.0
16emb|BX284697.8| Zebrafish DNA sequence from clone DKEY-7M11 in l... 40 6.0
17gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.0
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
19gb|AC099778.2| Homo sapiens chromosome 3 clone RP11-708J19, comp... 40 6.0
20gb|AC002115.1|HSAC002115 Human DNA from overlapping chromosome 1... 40 6.0
21dbj|AK068759.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
22emb|CR931938.9| Zebrafish DNA sequence from clone DKEY-115J2 in ... 40 6.0 
>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04,
             complete sequence
          Length = 169073

 Score =  117 bits (59), Expect = 3e-23
 Identities = 119/139 (85%)
 Strand = Plus / Plus

                                                                         
Query: 91    ttaaggttgctggtgatggatcaaagccgaagaagagagcgaaatcccccatcccgacgc 150
             ||||| ||| ||| || ||||| ||||||| || ||||||||||||||| || ||||| |
Sbjct: 89496 ttaagattgttggagagggatcgaagccgaggaggagagcgaaatccccaatgccgaccc 89555

                                                                         
Query: 151   gcgtcatctccgacgtttttagggaggcgaaagctgccagtaagaggttctcctctccac 210
             | |||||||| || ||||||| |||||| |||||||||| ||||||||||||    ||||
Sbjct: 89556 gtgtcatctctgaagtttttaaggaggccaaagctgccactaagaggttctctagcccac 89615

                                
Query: 211   agcggcaaaggaaatctag 229
             |||||||||||||||||||
Sbjct: 89616 agcggcaaaggaaatctag 89634



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                         
Query: 361   tggatgtacttgagaaatggacggtcgaccgttcacagttactcattggccatagatttg 420
             ||||| ||||||||| ||||||  | ||||| ||||||||||||||||| || |||||||
Sbjct: 89775 tggatatacttgagagatggacaattgaccgctcacagttactcattggtcaaagatttg 89834

                                      
Query: 421   catcgggggcttatagtcgtctgtt 445
             |||| ||||| ||||||||| ||||
Sbjct: 89835 catcaggggcatatagtcgtttgtt 89859



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 306   agggcctcttcctggccaaggaact 330
             |||||||| ||||||||||||||||
Sbjct: 89720 agggcctcgtcctggccaaggaact 89744
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  117 bits (59), Expect = 3e-23
 Identities = 119/139 (85%)
 Strand = Plus / Plus

                                                                            
Query: 91       ttaaggttgctggtgatggatcaaagccgaagaagagagcgaaatcccccatcccgacgc 150
                ||||| ||| ||| || ||||| ||||||| || ||||||||||||||| || ||||| |
Sbjct: 25573089 ttaagattgttggagagggatcgaagccgaggaggagagcgaaatccccaatgccgaccc 25573148

                                                                            
Query: 151      gcgtcatctccgacgtttttagggaggcgaaagctgccagtaagaggttctcctctccac 210
                | |||||||| || ||||||| |||||| |||||||||| ||||||||||||    ||||
Sbjct: 25573149 gtgtcatctctgaagtttttaaggaggccaaagctgccactaagaggttctctagcccac 25573208

                                   
Query: 211      agcggcaaaggaaatctag 229
                |||||||||||||||||||
Sbjct: 25573209 agcggcaaaggaaatctag 25573227



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                            
Query: 361      tggatgtacttgagaaatggacggtcgaccgttcacagttactcattggccatagatttg 420
                ||||| ||||||||| ||||||  | ||||| ||||||||||||||||| || |||||||
Sbjct: 25573368 tggatatacttgagagatggacaattgaccgctcacagttactcattggtcaaagatttg 25573427

                                         
Query: 421      catcgggggcttatagtcgtctgtt 445
                |||| ||||| ||||||||| ||||
Sbjct: 25573428 catcaggggcatatagtcgtttgtt 25573452



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 306      agggcctcttcctggccaaggaact 330
                |||||||| ||||||||||||||||
Sbjct: 25573313 agggcctcgtcctggccaaggaact 25573337
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>dbj|AK068419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153L22, full
            insert sequence
          Length = 3570

 Score =  117 bits (59), Expect = 3e-23
 Identities = 119/139 (85%)
 Strand = Plus / Plus

                                                                        
Query: 91   ttaaggttgctggtgatggatcaaagccgaagaagagagcgaaatcccccatcccgacgc 150
            ||||| ||| ||| || ||||| ||||||| || ||||||||||||||| || ||||| |
Sbjct: 1596 ttaagattgttggagagggatcgaagccgaggaggagagcgaaatccccaatgccgaccc 1655

                                                                        
Query: 151  gcgtcatctccgacgtttttagggaggcgaaagctgccagtaagaggttctcctctccac 210
            | |||||||| || ||||||| |||||| |||||||||| ||||||||||||    ||||
Sbjct: 1656 gtgtcatctctgaagtttttaaggaggccaaagctgccactaagaggttctctagcccac 1715

                               
Query: 211  agcggcaaaggaaatctag 229
            |||||||||||||||||||
Sbjct: 1716 agcggcaaaggaaatctag 1734



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                        
Query: 361  tggatgtacttgagaaatggacggtcgaccgttcacagttactcattggccatagatttg 420
            ||||| ||||||||| ||||||  | ||||| ||||||||||||||||| || |||||||
Sbjct: 1875 tggatatacttgagagatggacaattgaccgctcacagttactcattggtcaaagatttg 1934

                                     
Query: 421  catcgggggcttatagtcgtctgtt 445
            |||| ||||| ||||||||| ||||
Sbjct: 1935 catcaggggcatatagtcgtttgtt 1959



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 306  agggcctcttcctggccaaggaact 330
            |||||||| ||||||||||||||||
Sbjct: 1820 agggcctcgtcctggccaaggaact 1844
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>dbj|AK067065.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091D22, full
            insert sequence
          Length = 2340

 Score =  117 bits (59), Expect = 3e-23
 Identities = 119/139 (85%)
 Strand = Plus / Plus

                                                                        
Query: 91   ttaaggttgctggtgatggatcaaagccgaagaagagagcgaaatcccccatcccgacgc 150
            ||||| ||| ||| || ||||| ||||||| || ||||||||||||||| || ||||| |
Sbjct: 904  ttaagattgttggagagggatcgaagccgaggaggagagcgaaatccccaatgccgaccc 963

                                                                        
Query: 151  gcgtcatctccgacgtttttagggaggcgaaagctgccagtaagaggttctcctctccac 210
            | |||||||| || ||||||| |||||| |||||||||| ||||||||||||    ||||
Sbjct: 964  gtgtcatctctgaagtttttaaggaggccaaagctgccactaagaggttctctagcccac 1023

                               
Query: 211  agcggcaaaggaaatctag 229
            |||||||||||||||||||
Sbjct: 1024 agcggcaaaggaaatctag 1042



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                        
Query: 361  tggatgtacttgagaaatggacggtcgaccgttcacagttactcattggccatagatttg 420
            ||||| ||||||||| ||||||  | ||||| ||||||||||||||||| || |||||||
Sbjct: 1183 tggatatacttgagagatggacaattgaccgctcacagttactcattggtcaaagatttg 1242

                                     
Query: 421  catcgggggcttatagtcgtctgtt 445
            |||| ||||| ||||||||| ||||
Sbjct: 1243 catcaggggcatatagtcgtttgtt 1267



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 306  agggcctcttcctggccaaggaact 330
            |||||||| ||||||||||||||||
Sbjct: 1128 agggcctcgtcctggccaaggaact 1152
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>dbj|AK100493.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098L24, full
           insert sequence
          Length = 2575

 Score =  109 bits (55), Expect = 8e-21
 Identities = 118/139 (84%)
 Strand = Plus / Plus

                                                                       
Query: 91  ttaaggttgctggtgatggatcaaagccgaagaagagagcgaaatcccccatcccgacgc 150
           ||||| ||| ||| || ||||| ||||||| || ||||||| ||||||| || ||||| |
Sbjct: 848 ttaagattgttggagagggatcgaagccgaggaggagagcggaatccccaatgccgaccc 907

                                                                       
Query: 151 gcgtcatctccgacgtttttagggaggcgaaagctgccagtaagaggttctcctctccac 210
           | |||||||| || ||||||| |||||| |||||||||| ||||||||||||    ||||
Sbjct: 908 gtgtcatctctgaagtttttaaggaggccaaagctgccactaagaggttctctagcccac 967

                              
Query: 211 agcggcaaaggaaatctag 229
           |||||||||||||||||||
Sbjct: 968 agcggcaaaggaaatctag 986



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                        
Query: 361  tggatgtacttgagaaatggacggtcgaccgttcacagttactcattggccatagatttg 420
            ||||| ||||||||| ||||||  | ||||| ||||||||||||||||| || |||||||
Sbjct: 1127 tggatatacttgagagatggacaattgaccgctcacagttactcattggtcaaagatttg 1186

                                     
Query: 421  catcgggggcttatagtcgtctgtt 445
            |||| ||||| ||||||||| ||||
Sbjct: 1187 catcaggggcatatagtcgtttgtt 1211



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 306  agggcctcttcctggccaaggaact 330
            |||||||| ||||||||||||||||
Sbjct: 1072 agggcctcgtcctggccaaggaact 1096
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>gb|AY105056.1| Zea mays PCO069465 mRNA sequence
          Length = 734

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                       
Query: 126 agagcgaaatcccccatcccgacgcgcgtcatctccgacgtttttagggaggcgaaagct 185
           ||||| || ||||| ||||| | |||||||||||| || || |||| |||||||||||| 
Sbjct: 112 agagccaagtcccctatccccaagcgcgtcatctcggatgtgtttaaggaggcgaaagca 171

                             
Query: 186 gccagtaagaggttctcc 203
           ||||  ||||||||||||
Sbjct: 172 gccaccaagaggttctcc 189



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                       
Query: 369 cttgagaaatggacggtcgaccgttcacagttactcattggccatagatttgcatcgggg 428
           |||||||  ||||||||||| || ||  |||| |||||||| ||||| |||||||| |||
Sbjct: 361 cttgagaggtggacggtcgatcgctctgagttgctcattggacataggtttgcatccggg 420

                   
Query: 429 gcttatag 436
           ||||||||
Sbjct: 421 gcttatag 428
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>gb|AC113291.16| Mus musculus chromosome 9, clone RP23-417K23, complete sequence
          Length = 200428

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 270    tcttcgacaagagcagcaagcaa 292
              |||||||||||||||||||||||
Sbjct: 192049 tcttcgacaagagcagcaagcaa 192027
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>gb|AC121813.3| Mus musculus BAC clone RP23-457E5 from 9, complete sequence
          Length = 178176

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 270    tcttcgacaagagcagcaagcaa 292
              |||||||||||||||||||||||
Sbjct: 121949 tcttcgacaagagcagcaagcaa 121971
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>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 306    agggcctcttcctggccaagg 326
              |||||||||||||||||||||
Sbjct: 216479 agggcctcttcctggccaagg 216499
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 33     ccttactttgcaaaggatgca 53
              |||||||||||||||||||||
Sbjct: 930478 ccttactttgcaaaggatgca 930498
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>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete
             sequence
          Length = 129440

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   acaagagcagcaagcaaatt 295
             ||||||||||||||||||||
Sbjct: 97225 acaagagcagcaagcaaatt 97244
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 276      acaagagcagcaagcaaatt 295
                ||||||||||||||||||||
Sbjct: 29265358 acaagagcagcaagcaaatt 29265377
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>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete
             sequence
          Length = 139788

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   acaagagcagcaagcaaatt 295
             ||||||||||||||||||||
Sbjct: 90642 acaagagcagcaagcaaatt 90623
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>gb|AE012367.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 275
            of 460 of the complete genome
          Length = 11245

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 347  aaaggtcgccgcgctggatg 366
            ||||||||||||||||||||
Sbjct: 4405 aaaggtcgccgcgctggatg 4386
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>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 115     agccgaagaagagagcgaaa 134
               ||||||||||||||||||||
Sbjct: 1786686 agccgaagaagagagcgaaa 1786705
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>emb|BX284697.8| Zebrafish DNA sequence from clone DKEY-7M11 in linkage group 1,
             complete sequence
          Length = 209946

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 217   aaaggaaatctagctctgttcggttgct 244
             ||||||||| |||||||||||| |||||
Sbjct: 12697 aaaggaaatttagctctgttcgattgct 12724
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 347     aaaggtcgccgcgctggatg 366
               ||||||||||||||||||||
Sbjct: 1878971 aaaggtcgccgcgctggatg 1878990
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 276      acaagagcagcaagcaaatt 295
                ||||||||||||||||||||
Sbjct: 29356786 acaagagcagcaagcaaatt 29356805
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>gb|AC099778.2| Homo sapiens chromosome 3 clone RP11-708J19, complete sequence
          Length = 212775

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   tcccccttttgccttctctt 273
             ||||||||||||||||||||
Sbjct: 16303 tcccccttttgccttctctt 16322
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>gb|AC002115.1|HSAC002115 Human DNA from overlapping chromosome 19 cosmids R31396, F25451, and
             R31076 containing COX6B and UPKA, genomic sequence,
             complete sequence
          Length = 103574

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   tcccccttttgccttctctt 273
             ||||||||||||||||||||
Sbjct: 48688 tcccccttttgccttctctt 48669
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>dbj|AK068759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158A20, full
            insert sequence
          Length = 2062

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 276  acaagagcagcaagcaaatt 295
            ||||||||||||||||||||
Sbjct: 1515 acaagagcagcaagcaaatt 1534
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>emb|CR931938.9| Zebrafish DNA sequence from clone DKEY-115J2 in linkage group 1,
             complete sequence
          Length = 86064

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 217   aaaggaaatctagctctgttcggttgct 244
             ||||||||| |||||||||||| |||||
Sbjct: 63253 aaaggaaatttagctctgttcgattgct 63226


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,036,795
Number of Sequences: 3902068
Number of extensions: 3036795
Number of successful extensions: 52693
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52556
Number of HSP's gapped (non-prelim): 132
length of query: 445
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 423
effective length of database: 17,147,199,772
effective search space: 7253265503556
effective search space used: 7253265503556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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