ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags31n03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF527606.1| Hordeum vulgare iron/ascorbate-dependent oxidoreductase (Hcp1) mRNA, complete cds Length = 1360 Score = 626 bits (316), Expect = e-176 Identities = 488/540 (90%), Gaps = 4/540 (0%) Strand = Plus / Plus Query: 9 acggcaacggcgagcactaccaggtggnaagggtatggaagtgacaaggtggtgtccgag 68 ||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct: 356 acggcaacggcaagcactaccaggtgg-aagggtatggaagtgacaaggtggagtccgag 414 Query: 69 gatcaggtcctcaactggaacgaccggttgcatctgagagtggagccggaagacgagnag 128 |||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||| || Sbjct: 415 gatcaggtcctcaattggaacgaccggttgcatctgagagttgagcccgaagatgag-ag 473 Query: 129 gaatttcgctaagtggcccagtcacccggaatctttcagggatgtgctacatgagtatgc 188 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || Sbjct: 474 gaatttcgctaagtggcccagtcacccagaatctttcagggatgtgctgaatgagtacgc 533 Query: 189 atcaagaatcaagaaaataagagacctcgtcttgcgatcgatagccaagctcctggagat 248 ||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 534 atcaaaaaccaagaaaataagagaccttgtcttgcgatcgatagccaagctcctggagat 593 Query: 249 tgacgaggactacttcgtcaaccagatatcaaacaaggcttccgggtttgctagattcaa 308 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 594 tgacgaggattacttcgtcaaccagatatcaaacaaggcttccgggtttgctagattgta 653 Query: 309 ctactaccctccatgcccgaggcctgacttagttttgggcctcaggcctcacaccgacgg 368 |||||||||||| || ||||| |||||| ||||||||||||||| ||||||| | || || Sbjct: 654 ctactaccctccgtgtccgagacctgacctagttttgggcctcacgcctcactctgatgg 713 Query: 369 tggtctccttaccatccttctcaacgatgacaccgttcggtggcttgcaagttcagagag 428 ||||||||||||||| | ||| ||| ||| |||||||||||||||||||||| Sbjct: 714 caacctccttaccatcctttttgtcgacgacgatgtt-ggtggcttgcaagttcagagag 772 Query: 429 atgggagatggtacaatgttccagccaagccgcacacattgcttggttaacctagcagac 488 |||||| |||||||||||||||||||||||| ||||| || || | ||| |||||||| Sbjct: 773 atgggaaatggtacaatgttccagccaagcctcacacgctg-gtgatcaacttagcagac 831 Query: 489 tgcctagaaataatgaacaatggaatctttaggagcccatttcacagagtggtgacgaac 548 ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 832 tgcctggagataatgaacaatggaatctttaggagcccggttcacagagtggtgacgaac 891
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 295 tttgctagattcaactactaccctccatgcccgaggcctgacttagttttgggcctcagg 354 ||||| |||||||||||||||||||| || || ||||||||| | || || ||| ||||| Sbjct: 10388284 tttgcaagattcaactactaccctccctgtccaaggcctgaccttgtgttcggcatcagg 10388343 Query: 355 cctcacaccgacgg 368 |||||| ||||||| Sbjct: 10388344 cctcactccgacgg 10388357
>dbj|AP005398.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0669G10 Length = 133372 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 295 tttgctagattcaactactaccctccatgcccgaggcctgacttagttttgggcctcagg 354 ||||| |||||||||||||||||||| || || ||||||||| | || || ||| ||||| Sbjct: 30706 tttgcaagattcaactactaccctccctgtccaaggcctgaccttgtgttcggcatcagg 30765 Query: 355 cctcacaccgacgg 368 |||||| ||||||| Sbjct: 30766 cctcactccgacgg 30779
>dbj|AK065581.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034J09, full insert sequence Length = 1729 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 295 tttgctagattcaactactaccctccatgcccgaggcctgacttagttttgggcctcagg 354 ||||| |||||||||||||||||||| || || ||||||||| | || || ||| ||||| Sbjct: 959 tttgcaagattcaactactaccctccctgtccaaggcctgaccttgtgttcggcatcagg 1018 Query: 355 cctcacaccgacgg 368 |||||| ||||||| Sbjct: 1019 cctcactccgacgg 1032
>ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa8043 predicted mRNA Length = 1164 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 296 ttgctagattcaactactaccctccatgcccgaggcctgacttagttttgggcctcaggc 355 |||| |||||||||||||||||||| || || ||||||||| | || || ||| |||||| Sbjct: 611 ttgcaagattcaactactaccctccctgtccaaggcctgaccttgtgttcggcgtcaggc 670 Query: 356 ctcacaccgacgg 368 ||||| ||||||| Sbjct: 671 ctcactccgacgg 683 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 157 gaatctttcagggatgtgctacatgagtatgcatcaagaatcaagaaaataagagac 213 ||||||||||||||||| || | ||||| |||||||||| ||| | |||||||||| Sbjct: 475 gaatctttcagggatgttctgaacgagtacgcatcaagaaccaaaagaataagagac 531 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 405 tcggtggcttgcaagttcagagagatgggagatggtacaatgttc 449 |||||||| ||||| ||||||| ||||| | ||||||||||||| Sbjct: 719 tcggtggcctgcaaattcagagggatggcaagtggtacaatgttc 763
>ref|XM_476309.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1053 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 296 ttgctagattcaactactaccctccatgcccgaggcctgacttagttttgggcctcaggc 355 |||| |||||||||||||||||||| || || ||||||||| | || || ||| |||||| Sbjct: 611 ttgcaagattcaactactaccctccctgtccaaggcctgaccttgtgttcggcgtcaggc 670 Query: 356 ctcacaccgacgg 368 ||||| ||||||| Sbjct: 671 ctcactccgacgg 683 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 157 gaatctttcagggatgtgctacatgagtatgcatcaagaatcaagaaaataagagac 213 ||||||||||||||||| || | ||||| |||||||||| ||| | |||||||||| Sbjct: 475 gaatctttcagggatgttctgaacgagtacgcatcaagaaccaaaagaataagagac 531 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 405 tcggtggcttgcaagttcagagagatgggagatggtacaatgttc 449 |||||||| ||||| ||||||| ||||| | ||||||||||||| Sbjct: 719 tcggtggcctgcaaattcagagggatggcaagtggtacaatgttc 763
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 296 ttgctagattcaactactaccctccatgcccgaggcctgacttagttttgggcctcaggc 355 |||| |||||||||||||||||||| || || ||||||||| | || || ||| |||||| Sbjct: 3905409 ttgcaagattcaactactaccctccctgtccaaggcctgaccttgtgttcggcgtcaggc 3905468 Query: 356 ctcacaccgacgg 368 ||||| ||||||| Sbjct: 3905469 ctcactccgacgg 3905481 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 296 ttgctagattcaactactaccctccatgcccgaggcctgacttagttttgggcctcaggc 355 |||| |||||||||||||||||||| || || ||||||||| | || || ||| |||||| Sbjct: 3893518 ttgcaagattcaactactaccctccctgtccaaggcctgaccttgtgttcggcgtcaggc 3893577 Query: 356 ctcacaccgacgg 368 ||||| ||||||| Sbjct: 3893578 ctcactccgacgg 3893590 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 296 ttgctagattcaactactaccctccatgcccgaggcctgacttagttttgggcctcaggc 355 |||| |||||||||||||||||||| || || ||||||||| | || || ||| |||||| Sbjct: 3855530 ttgcaagattcaactactaccctccctgtccaaggcctgaccttgtgttcggcgtcaggc 3855589 Query: 356 ctcacaccgacgg 368 ||||| ||||||| Sbjct: 3855590 ctcactccgacgg 3855602 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 405 tcggtggcttgcaagttcagagagatgggagatggtacaatgttc 449 |||||||| ||||| ||||||| ||||| | ||||||||||||| Sbjct: 3905517 tcggtggcctgcaaattcagagggatggcaagtggtacaatgttc 3905561 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 405 tcggtggcttgcaagttcagagagatgggagatggtacaatgttc 449 |||||||| ||||| ||||||| ||||| | ||||||||||||| Sbjct: 3893626 tcggtggcctgcaaattcagagggatggcaagtggtacaatgttc 3893670 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 405 tcggtggcttgcaagttcagagagatgggagatggtacaatgttc 449 |||||||| ||||| ||||||| ||||| | ||||||||||||| Sbjct: 3855638 tcggtggcctgcaaattcagagggatggcaagtggtacaatgttc 3855682 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 ttgctagattcaactactaccctc 319 ||||| |||||||||||||||||| Sbjct: 3900918 ttgctcgattcaactactaccctc 3900941 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 ttgctagattcaactactaccctc 319 ||||| |||||||||||||||||| Sbjct: 3889095 ttgctcgattcaactactaccctc 3889118 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 ttgctagattcaactactaccctc 319 ||||| |||||||||||||||||| Sbjct: 3851039 ttgctcgattcaactactaccctc 3851062
>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0035I03 Length = 153749 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 296 ttgctagattcaactactaccctccatgcccgaggcctgacttagttttgggcctcaggc 355 |||| |||||||||||||||||||| || || ||||||||| | || || ||| |||||| Sbjct: 11285 ttgcaagattcaactactaccctccctgtccaaggcctgaccttgtgttcggcgtcaggc 11344 Query: 356 ctcacaccgacgg 368 ||||| ||||||| Sbjct: 11345 ctcactccgacgg 11357 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 405 tcggtggcttgcaagttcagagagatgggagatggtacaatgttc 449 |||||||| ||||| ||||||| ||||| | ||||||||||||| Sbjct: 11393 tcggtggcctgcaaattcagagggatggcaagtggtacaatgttc 11437 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 ttgctagattcaactactaccctc 319 ||||| |||||||||||||||||| Sbjct: 6794 ttgctcgattcaactactaccctc 6817
>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0015E04 Length = 152046 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 296 ttgctagattcaactactaccctccatgcccgaggcctgacttagttttgggcctcaggc 355 |||| |||||||||||||||||||| || || ||||||||| | || || ||| |||||| Sbjct: 151540 ttgcaagattcaactactaccctccctgtccaaggcctgaccttgtgttcggcgtcaggc 151599 Query: 356 ctcacaccgacgg 368 ||||| ||||||| Sbjct: 151600 ctcactccgacgg 151612 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 296 ttgctagattcaactactaccctccatgcccgaggcctgacttagttttgggcctcaggc 355 |||| |||||||||||||||||||| || || ||||||||| | || || ||| |||||| Sbjct: 113484 ttgcaagattcaactactaccctccctgtccaaggcctgaccttgtgttcggcgtcaggc 113543 Query: 356 ctcacaccgacgg 368 ||||| ||||||| Sbjct: 113544 ctcactccgacgg 113556 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 405 tcggtggcttgcaagttcagagagatgggagatggtacaatgttc 449 |||||||| ||||| ||||||| ||||| | ||||||||||||| Sbjct: 151648 tcggtggcctgcaaattcagagggatggcaagtggtacaatgttc 151692 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 405 tcggtggcttgcaagttcagagagatgggagatggtacaatgttc 449 |||||||| ||||| ||||||| ||||| | ||||||||||||| Sbjct: 113592 tcggtggcctgcaaattcagagggatggcaagtggtacaatgttc 113636 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 ttgctagattcaactactaccctc 319 ||||| |||||||||||||||||| Sbjct: 147049 ttgctcgattcaactactaccctc 147072 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 ttgctagattcaactactaccctc 319 ||||| |||||||||||||||||| Sbjct: 108993 ttgctcgattcaactactaccctc 109016
>emb|AL157711.12| Human DNA sequence from clone RP11-21M8 on chromosome 10 Contains part of the DOCK1 gene for dedicator of cyto-kinesis 1, complete sequence Length = 154818 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 415 gcaagttcagagagatgggaga 436 |||||||||||||||||||||| Sbjct: 76264 gcaagttcagagagatgggaga 76243
>gb|AY596171.1| Populus tomentosa gibberellin 20-oxidase gene, complete cds Length = 1362 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 864 tcaactactaccctccatgcc 884
>gb|AY479975.1| Populus tomentosa gibberellin 20-oxidase mRNA, complete cds Length = 1158 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 704 tcaactactaccctccatgcc 724
>emb|AJ843665.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 98_2 Length = 1689 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 967 tcaactactaccctccatgcc 987
>emb|AJ843664.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 98_1 Length = 1689 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 967 tcaactactaccctccatgcc 987
>emb|AJ843663.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 94_2 Length = 1709 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 987 tcaactactaccctccatgcc 1007
>emb|AJ843662.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 94_1 Length = 1709 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 987 tcaactactaccctccatgcc 1007
>emb|AJ843661.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 92_2 Length = 1710 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 988 tcaactactaccctccatgcc 1008
>emb|AJ843660.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 92_1 Length = 1689 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 967 tcaactactaccctccatgcc 987
>emb|AJ843658.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 87_1 Length = 1689 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 967 tcaactactaccctccatgcc 987
>emb|AJ843657.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 70_2 Length = 1687 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 965 tcaactactaccctccatgcc 985
>emb|AJ843656.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 70_1 Length = 1687 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 965 tcaactactaccctccatgcc 985
>emb|AJ843655.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 67_2 Length = 1711 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 989 tcaactactaccctccatgcc 1009
>emb|AJ843654.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 67_1 Length = 1691 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 969 tcaactactaccctccatgcc 989
>emb|AJ843653.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 65_2 Length = 1691 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 969 tcaactactaccctccatgcc 989
>emb|AJ843652.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 65_1 Length = 1695 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 973 tcaactactaccctccatgcc 993
>emb|AJ843651.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 58_2 Length = 1691 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 969 tcaactactaccctccatgcc 989
>emb|AJ843650.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 58_1 Length = 1691 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 969 tcaactactaccctccatgcc 989
>emb|AJ843649.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 24_2 Length = 1685 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 963 tcaactactaccctccatgcc 983
>emb|AJ843648.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 24_1 Length = 1691 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 969 tcaactactaccctccatgcc 989
>emb|AJ843647.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 22_2 Length = 1693 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 971 tcaactactaccctccatgcc 991
>emb|AJ843646.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 22_1 Length = 1693 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 971 tcaactactaccctccatgcc 991
>emb|AJ843645.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 17_2 Length = 1711 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 989 tcaactactaccctccatgcc 1009
>emb|AJ843644.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 17_1 Length = 1712 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 990 tcaactactaccctccatgcc 1010
>emb|AJ843643.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 13_2 Length = 1691 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 969 tcaactactaccctccatgcc 989
>emb|AJ843642.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 13_1 Length = 1691 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 969 tcaactactaccctccatgcc 989
>emb|AJ843641.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 114_2 Length = 1691 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 969 tcaactactaccctccatgcc 989
>emb|AJ843640.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 114_1 Length = 1691 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 969 tcaactactaccctccatgcc 989
>emb|AJ843639.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 112_2 Length = 1712 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 990 tcaactactaccctccatgcc 1010
>emb|AJ843638.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 112_1 Length = 1712 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 990 tcaactactaccctccatgcc 1010
>emb|AJ843637.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 111_2 Length = 1711 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 989 tcaactactaccctccatgcc 1009
>emb|AJ843636.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 111_1 Length = 1692 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 970 tcaactactaccctccatgcc 990
>emb|AJ843635.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 10_2 Length = 1687 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 965 tcaactactaccctccatgcc 985
>emb|AJ843634.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 10_1 Length = 1691 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 969 tcaactactaccctccatgcc 989
>emb|AJ843633.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 109_2 Length = 1691 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 969 tcaactactaccctccatgcc 989
>emb|AJ843631.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 108_2 Length = 1691 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 969 tcaactactaccctccatgcc 989
>emb|AJ843630.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 108_1 Length = 1689 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 967 tcaactactaccctccatgcc 987
>emb|AJ843629.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 107_2 Length = 1689 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 967 tcaactactaccctccatgcc 987
>emb|AJ843628.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 107_1 Length = 1711 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 989 tcaactactaccctccatgcc 1009
>emb|AJ843627.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 104_2 Length = 1709 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 987 tcaactactaccctccatgcc 1007
>emb|AJ843626.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 104_1 Length = 1709 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 987 tcaactactaccctccatgcc 1007
>emb|AJ843625.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 102_1 Length = 1689 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 967 tcaactactaccctccatgcc 987
>emb|AJ843624.1| Populus tremula ga20ox1 gene for gibberellin 20-oxidase, exons 1-3, isolate 102_2 Length = 1689 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 967 tcaactactaccctccatgcc 987
>emb|AL139085.13| Human DNA sequence from clone RP11-431O22 on chromosome 13 Contains the 5' end of the gene for chondromodulin I precursor (CHM-I), a novel gene, the PCDH8 gene for protocadherin 8 and 4 CpG islands, complete sequence Length = 173292 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 421 tcagagagatgggagatggtacaat 445 |||||||| |||||||||||||||| Sbjct: 29786 tcagagaggtgggagatggtacaat 29810
>emb|AJ001326.2|PTXPTGIBB Populus tremula x Populus tremuloides mRNA for gibberellin 20-oxidase Length = 1857 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 982 tcaactactaccctccatgcc 1002
>gb|AC129312.6| Mus musculus BAC clone RP24-405K6 from chromosome 1, complete sequence Length = 197135 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 ccgaggatcaggtcctcaact 84 ||||||||||||||||||||| Sbjct: 107993 ccgaggatcaggtcctcaact 107973
>dbj|AB090241.1| Populus alba PaGA20ox1b gene for gibberellin 20-oxidase, complete cds Length = 1440 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 815 tcaactactaccctccatgcc 835
>dbj|AB090240.1| Populus alba PaGA20ox1b mRNA for gibberellin 20-oxidase, complete cds Length = 1158 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 704 tcaactactaccctccatgcc 724
>dbj|AB090239.1| Populus alba PaGA20ox1a gene for gibberellin 20-oxidase, complete cds Length = 1440 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 815 tcaactactaccctccatgcc 835
>dbj|AB090238.1| Populus alba PaGA20ox1a mRNA for gibberellin 20-oxidase, complete cds Length = 1158 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 704 tcaactactaccctccatgcc 724
>dbj|AB089676.1| Populus nigra PnGA20ox1 gene for gibberellin 20-oxidase, complete cds Length = 1449 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 815 tcaactactaccctccatgcc 835
>dbj|AB089675.1| Populus nigra PnGA20ox1 mRNA for gibberellin 20-oxidase, complete cds Length = 1158 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcaactactaccctccatgcc 325 ||||||||||||||||||||| Sbjct: 704 tcaactactaccctccatgcc 724
>dbj|AB021290.1| Homo sapiens gene for chondromodulin-1, promoter and partial cds Length = 2982 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 421 tcagagagatgggagatggtacaat 445 |||||||| |||||||||||||||| Sbjct: 1354 tcagagaggtgggagatggtacaat 1330
>ref|NM_124779.1| Arabidopsis thaliana oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and > AT5G54000 mRNA, complete cds Length = 1050 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 301 agattcaactactaccctccatgcccgaggcc 332 ||||||||| |||||||||||| |||||||| Sbjct: 619 agattcaacatctaccctccatgtccgaggcc 650
>ref|NM_185701.1| Oryza sativa (japonica cultivar-group), Ozsa8052 predicted mRNA Length = 1050 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 ttgctagattcaactactaccctc 319 ||||| |||||||||||||||||| Sbjct: 608 ttgctcgattcaactactaccctc 631
>ref|NM_185691.1| Oryza sativa (japonica cultivar-group), Ozsa8042 predicted mRNA Length = 1050 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 ttgctagattcaactactaccctc 319 ||||| |||||||||||||||||| Sbjct: 608 ttgctcgattcaactactaccctc 631
>gb|BT016483.1| Zea mays clone Contig316 mRNA sequence Length = 1124 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 agattcaactactaccctcc 320 |||||||||||||||||||| Sbjct: 592 agattcaactactaccctcc 611
>gb|BT018033.1| Zea mays clone EL01N0530E08.c mRNA sequence Length = 1095 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 agattcaactactaccctcc 320 |||||||||||||||||||| Sbjct: 537 agattcaactactaccctcc 556
>gb|AC146037.1| Pan troglodytes BAC clone RP43-44A5 from 7, complete sequence Length = 177637 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 tcaagaatcaagaaaataag 209 |||||||||||||||||||| Sbjct: 11906 tcaagaatcaagaaaataag 11887
>gb|AC125168.4| Mus musculus BAC clone RP24-449N2 from chromosome 3, complete sequence Length = 166604 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 agaaataatgaacaatggaa 513 |||||||||||||||||||| Sbjct: 80052 agaaataatgaacaatggaa 80071
>gb|AC099414.4| Mus musculus BAC clone RP23-122C18 from 3, complete sequence Length = 203057 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 agaaataatgaacaatggaa 513 |||||||||||||||||||| Sbjct: 9469 agaaataatgaacaatggaa 9450
>gb|AC145774.1| Pan troglodytes BAC clone RP43-160F1 from 7, complete sequence Length = 208178 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 tcaagaatcaagaaaataag 209 |||||||||||||||||||| Sbjct: 205252 tcaagaatcaagaaaataag 205233
>gb|AC159819.2| Mus musculus BAC clone RP23-180C14 from chromosome 9, complete sequence Length = 211119 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 ttaggagcccatttcacaga 536 |||||||||||||||||||| Sbjct: 153704 ttaggagcccatttcacaga 153685
>gb|DQ056720.1| Arabidopsis thaliana oxidoreductase (At5g54000) mRNA, complete cds Length = 1050 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 301 agattcaactactaccctccatgcccgaggcc 332 ||||||||| |||||||||||| |||||||| Sbjct: 619 agattcaacatctaccctccatgtccgaggcc 650
>gb|AC068408.9| Homo sapiens chromosome 18, clone RP11-612A1, complete sequence Length = 183583 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 gtctccttaccatccttctc 390 |||||||||||||||||||| Sbjct: 88333 gtctccttaccatccttctc 88314
>gb|AC023426.29| Homo sapiens 12 BAC RP11-396L8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 148610 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 ctagcagactgcctagaaat 499 |||||||||||||||||||| Sbjct: 122613 ctagcagactgcctagaaat 122632
>gb|AC019106.3| Homo sapiens BAC clone RP11-479L11 from 2, complete sequence Length = 198540 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 aataatgaacaatggaatct 516 |||||||||||||||||||| Sbjct: 51918 aataatgaacaatggaatct 51899
>dbj|AB007644.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19P17 Length = 73840 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 301 agattcaactactaccctccatgcccgaggcc 332 ||||||||| |||||||||||| |||||||| Sbjct: 58029 agattcaacatctaccctccatgtccgaggcc 57998
>gb|AC004492.1|AC004492 Homo sapiens BAC clone CTA-363E19 from 7q31.1, complete sequence Length = 165608 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 tcaagaatcaagaaaataag 209 |||||||||||||||||||| Sbjct: 144139 tcaagaatcaagaaaataag 144158
>gb|AC129222.4| Mus musculus BAC clone RP24-532L14 from 14, complete sequence Length = 181469 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 cttgcaagttcagagagatg 431 |||||||||||||||||||| Sbjct: 124261 cttgcaagttcagagagatg 124280
>emb|AL158800.6|CNS01RGM Human chromosome 14 DNA sequence BAC R-359N5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163979 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 gagtatgcatcaagaatcaa 200 |||||||||||||||||||| Sbjct: 133856 gagtatgcatcaagaatcaa 133875
>emb|AL928993.7| Mouse DNA sequence from clone RP23-74A1 on chromosome 2, complete sequence Length = 111153 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ctacatgagtatgcatcaag 194 |||||||||||||||||||| Sbjct: 39717 ctacatgagtatgcatcaag 39736
>dbj|AP002022.1| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2198J12, complete sequence Length = 173933 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 caagaatcaagaaaataaga 210 |||||||||||||||||||| Sbjct: 16988 caagaatcaagaaaataaga 16969 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,640,941 Number of Sequences: 3902068 Number of extensions: 3640941 Number of successful extensions: 72640 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72452 Number of HSP's gapped (non-prelim): 186 length of query: 549 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 526 effective length of database: 17,143,297,704 effective search space: 9017374592304 effective search space used: 9017374592304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
