ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags31n01 |
|---|---|
| Clone Library Name | barley_pub |
>RS6B_ARATH (P51430) 40S ribosomal protein S6-2| Length = 249 Score = 99.0 bits (245), Expect(2) = 2e-23 Identities = 52/76 (68%), Positives = 57/76 (75%) Frame = +2 Query: 59 TFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQ 238 TF NKKGKKVSKAPKIQRLVTPLTLQ S+AA+YQKLLA RLKEQ Sbjct: 165 TFTNKKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQ 224 Query: 239 RDRRSESMAKRRSKLS 286 RDRRSES+AK+RS+LS Sbjct: 225 RDRRSESLAKKRSRLS 240 Score = 29.6 bits (65), Expect(2) = 2e-23 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = +1 Query: 10 LARXDDVRSYVNTYRR 57 L + DDVR YVNTYRR Sbjct: 149 LGKEDDVRKYVNTYRR 164
>RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6| Length = 251 Score = 97.1 bits (240), Expect(2) = 4e-23 Identities = 52/76 (68%), Positives = 55/76 (72%) Frame = +2 Query: 59 TFLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQ 238 TF NKKGK SKAPKIQRLVTPLTLQ SEAAEYQKLLA RLKEQ Sbjct: 165 TFTNKKGKTCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQ 224 Query: 239 RDRRSESMAKRRSKLS 286 RDRRSES+AK+RS+LS Sbjct: 225 RDRRSESLAKKRSRLS 240 Score = 30.0 bits (66), Expect(2) = 4e-23 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +1 Query: 10 LARXDDVRSYVNTYRR 57 L++ DDVR YVNTYRR Sbjct: 149 LSKEDDVRKYVNTYRR 164
>RS6A_ARATH (O48549) 40S ribosomal protein S6-1| Length = 250 Score = 95.5 bits (236), Expect(2) = 2e-22 Identities = 50/75 (66%), Positives = 56/75 (74%) Frame = +2 Query: 62 FLNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQR 241 F NKKGK+VSKAPKIQRLVTPLTLQ S+AA+YQKLLA RLKEQR Sbjct: 166 FTNKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQR 225 Query: 242 DRRSESMAKRRSKLS 286 DRRSES+AK+RS+LS Sbjct: 226 DRRSESLAKKRSRLS 240 Score = 29.6 bits (65), Expect(2) = 2e-22 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +1 Query: 10 LARXDDVRSYVNTYRR 57 L + DDVR+YVNTYRR Sbjct: 149 LKKEDDVRTYVNTYRR 164
>RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment)| Length = 199 Score = 81.6 bits (200), Expect(2) = 5e-16 Identities = 44/68 (64%), Positives = 49/68 (72%) Frame = +2 Query: 83 KVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSESM 262 K SKAPKIQRLVTPLTLQ SEAAEYQKLLA RLKEQR++RSES+ Sbjct: 123 KGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESL 182 Query: 263 AKRRSKLS 286 AK+RS+LS Sbjct: 183 AKKRSRLS 190 Score = 21.6 bits (44), Expect(2) = 5e-16 Identities = 8/11 (72%), Positives = 9/11 (81%) Frame = +1 Query: 16 RXDDVRSYVNT 48 + DDVR YVNT Sbjct: 104 KEDDVRKYVNT 114
>RS6_RAT (P62755) 40S ribosomal protein S6| Length = 249 Score = 66.2 bits (160), Expect = 5e-11 Identities = 37/71 (52%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Frame = +2 Query: 65 LNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQR 241 LNK+GKK +KAPKIQRLVTP LQ EAAEY KLLA+R+KE + Sbjct: 162 LNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAK 221 Query: 242 DRRSESMAKRR 274 ++R E +AKRR Sbjct: 222 EKRQEQIAKRR 232
>RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 66.2 bits (160), Expect = 5e-11 Identities = 37/71 (52%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Frame = +2 Query: 65 LNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQR 241 LNK+GKK +KAPKIQRLVTP LQ EAAEY KLLA+R+KE + Sbjct: 162 LNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAK 221 Query: 242 DRRSESMAKRR 274 ++R E +AKRR Sbjct: 222 EKRQEQIAKRR 232
>RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 66.2 bits (160), Expect = 5e-11 Identities = 37/71 (52%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Frame = +2 Query: 65 LNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQR 241 LNK+GKK +KAPKIQRLVTP LQ EAAEY KLLA+R+KE + Sbjct: 162 LNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAK 221 Query: 242 DRRSESMAKRR 274 ++R E +AKRR Sbjct: 222 EKRQEQIAKRR 232
>RS6_CHICK (P47838) 40S ribosomal protein S6| Length = 249 Score = 65.1 bits (157), Expect = 1e-10 Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Frame = +2 Query: 65 LNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQR 241 LNK+GKK +KAPKIQRLVTP LQ EAA+Y KLLA+R+KE + Sbjct: 162 LNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAK 221 Query: 242 DRRSESMAKRR 274 ++R E +AKRR Sbjct: 222 EKRQEQIAKRR 232
>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6| Length = 249 Score = 64.7 bits (156), Expect = 2e-10 Identities = 37/71 (52%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Frame = +2 Query: 65 LNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQR 241 L K+GKK +KAPKIQRLVTP LQ EAAEY KLLA+RLKE + Sbjct: 162 LTKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAK 221 Query: 242 DRRSESMAKRR 274 ++R E +AKRR Sbjct: 222 EKRQEKIAKRR 232
>RS6_ONCMY (Q9YGF2) 40S ribosomal protein S6| Length = 249 Score = 61.6 bits (148), Expect = 1e-09 Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Frame = +2 Query: 65 LNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQR 241 L K+GKK +KAP+IQRLVTP LQ EA+EY KLLA+R+KE + Sbjct: 162 LTKEGKKPRTKAPRIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRMKEAK 221 Query: 242 DRRSESMAKRR 274 ++R E +AKRR Sbjct: 222 EKRQEQIAKRR 232
>RS6_XENLA (P39017) 40S ribosomal protein S6| Length = 249 Score = 60.5 bits (145), Expect = 3e-09 Identities = 35/71 (49%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Frame = +2 Query: 65 LNKKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQR 241 L K+GKK +KAPKIQRLVTP LQ EA+EY KLLA+R KE + Sbjct: 162 LAKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRSKEAK 221 Query: 242 DRRSESMAKRR 274 ++R E +AKRR Sbjct: 222 EKRQEQIAKRR 232
>RS6_DEBHA (Q6BXH8) 40S ribosomal protein S6| Length = 236 Score = 57.0 bits (136), Expect = 3e-08 Identities = 33/71 (46%), Positives = 39/71 (54%) Frame = +2 Query: 71 KKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRR 250 K KK +KAPKIQRLVTP TLQ AAEY +LLAQRL E++ R Sbjct: 164 KGDKKYTKAPKIQRLVTPQTLQRKRALKAQKVKNAQQQRDAAAEYAQLLAQRLHERKAER 223 Query: 251 SESMAKRRSKL 283 +E +R S L Sbjct: 224 AEIKKRRASSL 234
>RS6_MANSE (Q94624) 40S ribosomal protein S6| Length = 253 Score = 54.7 bits (130), Expect = 2e-07 Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 4/73 (5%) Frame = +2 Query: 71 KKGKKVSK----APKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQ 238 K+GK+ +K APKIQRLVTP+ LQ S A+Y KLLAQR KE Sbjct: 165 KEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKSAEADYAKLLAQRKKES 224 Query: 239 RDRRSESMAKRRS 277 + RR E + +RRS Sbjct: 225 KVRRQEEIKRRRS 237
>RS6_APLCA (Q9BMX5) 40S ribosomal protein S6| Length = 247 Score = 54.3 bits (129), Expect = 2e-07 Identities = 33/72 (45%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Frame = +2 Query: 71 KKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDR 247 + GKK SKAPKIQRLVTP+ LQ + AEY KLLAQR+KE ++R Sbjct: 165 RDGKKAKSKAPKIQRLVTPVVLQRKRARMALKKKRVTKKREDHAEYTKLLAQRMKEAKER 224 Query: 248 RSE-SMAKRRSK 280 + E + RSK Sbjct: 225 KMERKRSNSRSK 236
>RS6A_SCHPO (P05752) 40S ribosomal protein S6-A| Length = 239 Score = 52.8 bits (125), Expect = 6e-07 Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +2 Query: 71 KKGKK-VSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDR 247 K+GKK +KAPKIQRLVTP TLQ EAAE+ +L+A+R+ E + + Sbjct: 166 KEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQK 225 Query: 248 RSESMAKRRSKL 283 R A+R S L Sbjct: 226 REVVKARRASSL 237
>RS6_SPOFR (Q95V32) 40S ribosomal protein S6| Length = 253 Score = 51.6 bits (122), Expect = 1e-06 Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Frame = +2 Query: 71 KKGKKVSK----APKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQ 238 K+GK+ +K APKIQRLVTP+ LQ +Y KLLAQR KE Sbjct: 165 KEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKQSENDYAKLLAQRKKES 224 Query: 239 RDRRSESMAKRRS 277 + RR E + +RRS Sbjct: 225 KVRRQEELKRRRS 237
>RS6_DROME (P29327) 40S ribosomal protein S6| Length = 248 Score = 51.2 bits (121), Expect = 2e-06 Identities = 26/68 (38%), Positives = 36/68 (52%) Frame = +2 Query: 80 KKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSES 259 K SKAPKIQRL+TP+ LQ +A+Y KLL QR KE + +R E+ Sbjct: 169 KATSKAPKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREEA 228 Query: 260 MAKRRSKL 283 +R + + Sbjct: 229 KRRRSASI 236
>RS6_YARLI (Q6C169) 40S ribosomal protein S6| Length = 242 Score = 51.2 bits (121), Expect = 2e-06 Identities = 27/71 (38%), Positives = 37/71 (52%) Frame = +2 Query: 71 KKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRR 250 K GK +KAPKIQRL+TP L AAEY +LLA+R+ E++ + Sbjct: 165 KSGKTYTKAPKIQRLITPRRLAHKAQLREKKVKAIQASKDAAAEYAQLLAKRVAEKKSEK 224 Query: 251 SESMAKRRSKL 283 +E +R S L Sbjct: 225 AEEKKRRASSL 235
>RS6B_SCHPO (Q9C0Z7) 40S ribosomal protein S6-B| Length = 239 Score = 50.8 bits (120), Expect = 2e-06 Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +2 Query: 71 KKGKK-VSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDR 247 K+GKK +KAPKIQRLVTP TLQ EAAE+ +L+A+R+ E + + Sbjct: 166 KEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQK 225 Query: 248 RSESMAKRRSKL 283 + A+R S + Sbjct: 226 KEVVKARRASSM 237
>RS6_KLULA (Q6CM04) 40S ribosomal protein S6| Length = 236 Score = 50.8 bits (120), Expect = 2e-06 Identities = 29/73 (39%), Positives = 38/73 (52%) Frame = +2 Query: 65 LNKKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRD 244 + K K +KAPKIQRLVTP LQ AAEY +LLA+RL E++ Sbjct: 162 VTKGDKSYTKAPKIQRLVTPQRLQRKRQQKSLKIKNAQAQREAAAEYAQLLAKRLSERKA 221 Query: 245 RRSESMAKRRSKL 283 ++E +R S L Sbjct: 222 EKAEVRKRRASSL 234
>RS6_CANGA (Q6FJH3) 40S ribosomal protein S6| Length = 236 Score = 50.4 bits (119), Expect = 3e-06 Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Frame = +2 Query: 74 KGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRR 250 KG+K +KAPKIQRLVTP LQ AAEY +LLA+RL E++ + Sbjct: 164 KGEKTYTKAPKIQRLVTPQRLQRKRYQRNLKVRNAQAQREAAAEYAQLLAKRLAERKAEK 223 Query: 251 SESMAKRRSKL 283 +E+ +R S L Sbjct: 224 AETRKRRASSL 234
>RS6_ASHGO (Q74ZK3) 40S ribosomal protein S6| Length = 236 Score = 50.4 bits (119), Expect = 3e-06 Identities = 29/71 (40%), Positives = 37/71 (52%) Frame = +2 Query: 71 KKGKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRR 250 K K +KAPKIQRLVTP LQ AAEY +LLA+RL E++ + Sbjct: 164 KGDKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLTEKKAEK 223 Query: 251 SESMAKRRSKL 283 +E +R S L Sbjct: 224 AEERKRRASSL 234
>RS6_YEAST (P02365) 40S ribosomal protein S6 (S10) (YS4) (RP9)| Length = 236 Score = 50.1 bits (118), Expect = 4e-06 Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +2 Query: 74 KGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRR 250 KG+K +KAPKIQRLVTP LQ AAEY +LLA+RL E++ + Sbjct: 164 KGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEK 223 Query: 251 SESMAKRRSKL 283 +E +R S L Sbjct: 224 AEIRKRRASSL 234
>RS6_BRAFL (O01727) 40S ribosomal protein S6| Length = 244 Score = 47.8 bits (112), Expect = 2e-05 Identities = 32/70 (45%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = +2 Query: 71 KKGKKVS-KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDR 247 K+GKK K PKIQRL+TP LQ E A Y KLLA+R KE+R Sbjct: 165 KEGKKQKFKTPKIQRLITPQRLQRKRHMRAVKRRRYAKQREEEATYAKLLAKRKKEER-- 222 Query: 248 RSESMAKRRS 277 E+ AKRRS Sbjct: 223 --EAHAKRRS 230
>RS6_AEDAE (Q9U761) 40S ribosomal protein S6| Length = 346 Score = 45.8 bits (107), Expect = 7e-05 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Frame = +2 Query: 71 KKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDR 247 K GKK +KAPKIQRL+TP+ LQ AEY K+L R +++R R Sbjct: 165 KDGKKARTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIR 224 Query: 248 RSESMAKRRSKLS 286 R ++ R S Sbjct: 225 RRSRLSSMRDSRS 237
>RS6_KLUMA (P41798) 40S ribosomal protein S6 (Ribosomal protein S10)| Length = 235 Score = 45.8 bits (107), Expect = 7e-05 Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Frame = +2 Query: 74 KGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRR 250 KG+K +KAPKIQRLVTP LQ AAEY +LLA+RL E R+ Sbjct: 164 KGEKTYTKAPKIQRLVTPQRLQRKRQQKALKIKNAQAQREAAAEYAQLLAKRLAE---RK 220 Query: 251 SESMAKRRSKL 283 +E +R S L Sbjct: 221 AEVRKRRASSL 231
>RS6_AEDAL (Q9U762) 40S ribosomal protein S6| Length = 349 Score = 45.1 bits (105), Expect = 1e-04 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Frame = +2 Query: 71 KKGKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDR 247 K GKK +KAPKIQRL+TP+ LQ AEY K+L R +++R R Sbjct: 165 KDGKKPRTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIR 224 Query: 248 RSESMAKRRSKLS 286 R ++ R S Sbjct: 225 RRSRLSSMRDSRS 237
>RS6_CAEEL (Q9NEN6) 40S ribosomal protein S6| Length = 246 Score = 39.3 bits (90), Expect = 0.007 Identities = 24/64 (37%), Positives = 32/64 (50%) Frame = +2 Query: 95 APKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSESMAKRR 274 APKIQRL+TP + +AA Y KLLA+ KE+ D + +A+RR Sbjct: 173 APKIQRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKEEHDAK---IARRR 229 Query: 275 SKLS 286 S S Sbjct: 230 SSAS 233
>RS6_LEIMA (Q9NE83) 40S ribosomal protein S6| Length = 249 Score = 34.7 bits (78), Expect = 0.17 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Frame = +2 Query: 71 KKGKKVS-KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLA--QRLKEQR 241 K GKK KAPKIQRL+TP +E EY +L+A +R QR Sbjct: 167 KSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR 226 Query: 242 DRRSESMAK 268 D + K Sbjct: 227 DHSKKHTRK 235
>RS6_LEIIN (O44012) 40S ribosomal protein S6| Length = 249 Score = 34.7 bits (78), Expect = 0.17 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Frame = +2 Query: 71 KKGKKVS-KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLA--QRLKEQR 241 K GKK KAPKIQRL+TP +E EY +L+A +R QR Sbjct: 167 KSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR 226 Query: 242 DRRSESMAK 268 D + K Sbjct: 227 DHSKKHTQK 235
>COX3_CHOCR (P48872) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 272 Score = 29.6 bits (65), Expect = 5.5 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +2 Query: 362 ATFSFLGLVIDAVLREHGYFIVGSFVTGVAFLCLYLMQFT 481 A+ I V+ H Y + GSF+ ++F CL L+ FT Sbjct: 28 ASLCAFSCAIGGVMYMHAY-VNGSFILSISFFCLLLVMFT 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,842,234 Number of Sequences: 219361 Number of extensions: 770386 Number of successful extensions: 2163 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 2109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2161 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
