ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags31n01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189879.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1077 Score = 323 bits (163), Expect = 3e-85 Identities = 273/307 (88%), Gaps = 2/307 (0%) Strand = Plus / Plus Query: 1 tcttcaaccttggcaaggnatgatgatgtccgcagctatgtcaacacataccgcaggnac 60 ||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||| || Sbjct: 528 tcttcaacctttccaagg-atgatgatgtccgcaaatatgtcaacacctaccgcagg-ac 585 Query: 61 cttccttaacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgac 120 ||| || |||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 586 attcactaccaagaatggcaagaaggtgagcaaggctcctaagatccagcgtcttgtgac 645 Query: 121 tcccttgaccctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaa 180 |||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 646 tcccctcaccctccagaggaagcgtgccagaatcgctgacaagaagaagaggatcgccaa 705 Query: 181 gaagaagtcagaggctgcagagtaccagaagctgcttgcgcaaaggctgaaggagcagag 240 ||||||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||||| Sbjct: 706 gaagaagtcggaggctgctgagtaccagaagcttcttgcccagaggctcaaggagcagag 765 Query: 241 agaccgccgcagtgagagcatggccaagaggaggtcaaagctgtctgctgctacaaaggc 300 || ||||| || |||||| |||| ||||||||||| ||||| ||| ||||| | ||||| Sbjct: 766 ggaacgccggagcgagagcttggcaaagaggaggtccaagctttcttctgctgccaaggc 825 Query: 301 tcctgct 307 | ||||| Sbjct: 826 tgctgct 832
>dbj|AK069465.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022D14, full insert sequence Length = 1078 Score = 323 bits (163), Expect = 3e-85 Identities = 273/307 (88%), Gaps = 2/307 (0%) Strand = Plus / Plus Query: 1 tcttcaaccttggcaaggnatgatgatgtccgcagctatgtcaacacataccgcaggnac 60 ||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||| || Sbjct: 529 tcttcaacctttccaagg-atgatgatgtccgcaaatatgtcaacacctaccgcagg-ac 586 Query: 61 cttccttaacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgac 120 ||| || |||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 587 attcactaccaagaatggcaagaaggtgagcaaggctcctaagatccagcgtcttgtgac 646 Query: 121 tcccttgaccctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaa 180 |||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 647 tcccctcaccctccagaggaagcgtgccagaatcgctgacaagaagaagaggatcgccaa 706 Query: 181 gaagaagtcagaggctgcagagtaccagaagctgcttgcgcaaaggctgaaggagcagag 240 ||||||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||||| Sbjct: 707 gaagaagtcggaggctgctgagtaccagaagcttcttgcccagaggctcaaggagcagag 766 Query: 241 agaccgccgcagtgagagcatggccaagaggaggtcaaagctgtctgctgctacaaaggc 300 || ||||| || |||||| |||| ||||||||||| ||||| ||| ||||| | ||||| Sbjct: 767 ggaacgccggagcgagagcttggcaaagaggaggtccaagctttcttctgctgccaaggc 826 Query: 301 tcctgct 307 | ||||| Sbjct: 827 tgctgct 833
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 283 bits (143), Expect = 3e-73 Identities = 209/231 (90%) Strand = Plus / Plus Query: 77 ggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttgaccctccag 136 ||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| Sbjct: 25671347 ggcaagaaggtgagcaaggctcctaagatccagcgtcttgtgactcccctcaccctccag 25671406 Query: 137 aggaagcgtgccagaatcgccgacaagaagaagaggatcgccaagaagaagtcagaggct 196 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 25671407 aggaagcgtgccagaatcgctgacaagaagaagaggatcgccaagaagaagtcggaggct 25671466 Query: 197 gcagagtaccagaagctgcttgcgcaaaggctgaaggagcagagagaccgccgcagtgag 256 || |||||||||||||| ||||| || ||||| ||||||||||| || ||||| || ||| Sbjct: 25671467 gctgagtaccagaagcttcttgcccagaggctcaaggagcagagggaacgccggagcgag 25671526 Query: 257 agcatggccaagaggaggtcaaagctgtctgctgctacaaaggctcctgct 307 ||| |||| ||||||||||| ||||| ||| ||||| | |||||| ||||| Sbjct: 25671527 agcttggcaaagaggaggtccaagctttcttctgctgccaaggctgctgct 25671577 Score = 58.0 bits (29), Expect = 3e-05 Identities = 51/57 (89%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 1 tcttcaaccttggcaaggnatgatgatgtccgcagctatgtcaacacataccgcagg 57 ||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||| Sbjct: 25671070 tcttcaacctttccaagg-atgatgatgtccgcaaatatgtcaacacctaccgcagg 25671125
>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0594D10 Length = 143200 Score = 283 bits (143), Expect = 3e-73 Identities = 209/231 (90%) Strand = Plus / Plus Query: 77 ggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttgaccctccag 136 ||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| Sbjct: 125320 ggcaagaaggtgagcaaggctcctaagatccagcgtcttgtgactcccctcaccctccag 125379 Query: 137 aggaagcgtgccagaatcgccgacaagaagaagaggatcgccaagaagaagtcagaggct 196 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 125380 aggaagcgtgccagaatcgctgacaagaagaagaggatcgccaagaagaagtcggaggct 125439 Query: 197 gcagagtaccagaagctgcttgcgcaaaggctgaaggagcagagagaccgccgcagtgag 256 || |||||||||||||| ||||| || ||||| ||||||||||| || ||||| || ||| Sbjct: 125440 gctgagtaccagaagcttcttgcccagaggctcaaggagcagagggaacgccggagcgag 125499 Query: 257 agcatggccaagaggaggtcaaagctgtctgctgctacaaaggctcctgct 307 ||| |||| ||||||||||| ||||| ||| ||||| | |||||| ||||| Sbjct: 125500 agcttggcaaagaggaggtccaagctttcttctgctgccaaggctgctgct 125550 Score = 58.0 bits (29), Expect = 3e-05 Identities = 51/57 (89%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 1 tcttcaaccttggcaaggnatgatgatgtccgcagctatgtcaacacataccgcagg 57 ||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||| Sbjct: 125043 tcttcaacctttccaagg-atgatgatgtccgcaaatatgtcaacacctaccgcagg 125098
>gb|AF295599.1| Zea mays ribosomal protein s6 RPS6-2 (rps6-2) mRNA, complete cds Length = 1023 Score = 280 bits (141), Expect = 4e-72 Identities = 216/241 (89%) Strand = Plus / Plus Query: 70 caagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttgac 129 |||||| |||||||||||||||||||| || ||||||||||| |||||||| |||||||| Sbjct: 572 caagaatggcaagaaggtgagcaaggcacctaagatccagcggcttgtgacccccttgac 631 Query: 130 cctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaagaagaagtc 189 |||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||| Sbjct: 632 cctccagaggaagcgtgctagaattgctgacaagaagaagaggatcgctaagaagaagtc 691 Query: 190 agaggctgcagagtaccagaagctgcttgcgcaaaggctgaaggagcagagagaccgccg 249 |||||||| |||||||||||||| ||||| || |||||||| || ||||| |||||||| Sbjct: 692 tgaggctgctgagtaccagaagcttcttgcccagaggctgaaagaacagagggaccgccg 751 Query: 250 cagtgagagcatggccaagaggaggtcaaagctgtctgctgctacaaaggctcctgctgc 309 |||||||||| |||||||||||||||| ||||| ||||| || | |||||| ||||||| Sbjct: 752 cagtgagagcttggccaagaggaggtctaagctttctgccgccgccaaggcttctgctgc 811 Query: 310 c 310 | Sbjct: 812 c 812
>gb|AY103674.1| Zea mays PCO104001 mRNA sequence Length = 1198 Score = 280 bits (141), Expect = 4e-72 Identities = 216/241 (89%) Strand = Plus / Plus Query: 70 caagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttgac 129 |||||| |||||||||||||||||||| || ||||||||||| |||||||| |||||||| Sbjct: 700 caagaatggcaagaaggtgagcaaggcacctaagatccagcggcttgtgacccccttgac 759 Query: 130 cctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaagaagaagtc 189 |||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||| Sbjct: 760 cctccagaggaagcgtgctagaattgctgacaagaagaagaggatcgctaagaagaagtc 819 Query: 190 agaggctgcagagtaccagaagctgcttgcgcaaaggctgaaggagcagagagaccgccg 249 |||||||| |||||||||||||| ||||| || |||||||| || ||||| |||||||| Sbjct: 820 tgaggctgctgagtaccagaagcttcttgcccagaggctgaaagaacagagggaccgccg 879 Query: 250 cagtgagagcatggccaagaggaggtcaaagctgtctgctgctacaaaggctcctgctgc 309 |||||||||| |||||||||||||||| ||||| ||||| || | |||||| ||||||| Sbjct: 880 cagtgagagcttggccaagaggaggtctaagctttctgccgccgccaaggcttctgctgc 939 Query: 310 c 310 | Sbjct: 940 c 940
>gb|U92045.1|ZMU92045 Zea mays ribosomal protein S6 RPS6-1 (rps6-1) mRNA, complete cds Length = 1039 Score = 272 bits (137), Expect = 1e-69 Identities = 282/327 (86%), Gaps = 5/327 (1%) Strand = Plus / Plus Query: 3 ttcaaccttggcaaggnatgatgatgtccgcagctatgtcaacacataccgcaggnacct 62 ||||||||| ||||| |||||||||| |||| || || ||||||||||||||| || | Sbjct: 508 ttcaaccttaacaagg-atgatgatgtacgcaagtacgtgaacacataccgcagg-acat 565 Query: 63 tccttaacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactc 122 || || |||||| ||||||||||| |||||||| || |||||||| || |||||||| | Sbjct: 566 tcactaccaagaacggcaagaaggtcagcaaggcacctaagatccaacggcttgtgacac 625 Query: 123 ccttgaccctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaaga 182 ||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |||| Sbjct: 626 ccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaagaggataactaaga 685 Query: 183 agaagtcagaggctgcagagtaccagaagctgcttgcgcaaaggctgaaggagcagagag 242 ||||||| |||||||| |||||||||||||| ||||| || ||||||||||| ||||||| Sbjct: 686 agaagtctgaggctgctgagtaccagaagcttcttgcccagaggctgaaggaacagagag 745 Query: 243 accgccgcagtgagagcatggccaagaggaggtcaaagctgtctgctgctacaaaggctc 302 ||||||| || |||||| |||||||||||||||| ||||| ||||| || | |||||| Sbjct: 746 accgccggagcgagagcttggccaagaggaggtccaagctttctgccgccgccaaggctt 805 Query: 303 ctgctg---cctctgcttaagattgtt 326 |||||| ||||||||||||| |||| Sbjct: 806 ctgctgccacctctgcttaagaatgtt 832
>ref|XM_470801.1| Oryza sativa (japonica cultivar-group), mRNA Length = 983 Score = 228 bits (115), Expect = 1e-56 Identities = 245/286 (85%), Gaps = 2/286 (0%) Strand = Plus / Plus Query: 6 aaccttggcaaggnatgatgatgtccgcagctatgtcaacacataccgcaggnaccttcc 65 ||||||| ||||| ||||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 483 aaccttgccaagg-atgatgatgtccgcaagtatgtcaacacttaccgcag-aaccttca 540 Query: 66 ttaacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactccct 125 || |||||| ||||||||||| ||||||||||| ||||||||| | ||||| |||||| Sbjct: 541 ctaccaagaacggcaagaaggttagcaaggctcctaagatccagaggcttgtcactcccc 600 Query: 126 tgaccctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaagaaga 185 |||| || ||||||||| | || ||||||||| | |||||| | || || |||||||||| Sbjct: 601 tgactcttcagaggaagagggcgagaatcgcccagaagaagcaaagaattgccaagaaga 660 Query: 186 agtcagaggctgcagagtaccagaagctgcttgcgcaaaggctgaaggagcagagagacc 245 |||| |||||||| |||||||||||||||||||| || ||||| ||||||||||| || | Sbjct: 661 agtccgaggctgccgagtaccagaagctgcttgcccagaggctcaaggagcagagggaac 720 Query: 246 gccgcagtgagagcatggccaagaggaggtcaaagctgtctgctgc 291 || | ||||||||| |||| ||||||||||| ||||| |||||||| Sbjct: 721 gcaggagtgagagcttggcaaagaggaggtccaagctttctgctgc 766
>dbj|AK121621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045B01, full insert sequence Length = 1018 Score = 228 bits (115), Expect = 1e-56 Identities = 245/286 (85%), Gaps = 2/286 (0%) Strand = Plus / Plus Query: 6 aaccttggcaaggnatgatgatgtccgcagctatgtcaacacataccgcaggnaccttcc 65 ||||||| ||||| ||||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 481 aaccttgccaagg-atgatgatgtccgcaagtatgtcaacacttaccgcag-aaccttca 538 Query: 66 ttaacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactccct 125 || |||||| ||||||||||| ||||||||||| ||||||||| | ||||| |||||| Sbjct: 539 ctaccaagaacggcaagaaggttagcaaggctcctaagatccagaggcttgtcactcccc 598 Query: 126 tgaccctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaagaaga 185 |||| || ||||||||| | || ||||||||| | |||||| | || || |||||||||| Sbjct: 599 tgactcttcagaggaagagggcgagaatcgcccagaagaagcaaagaattgccaagaaga 658 Query: 186 agtcagaggctgcagagtaccagaagctgcttgcgcaaaggctgaaggagcagagagacc 245 |||| |||||||| |||||||||||||||||||| || ||||| ||||||||||| || | Sbjct: 659 agtccgaggctgccgagtaccagaagctgcttgcccagaggctcaaggagcagagggaac 718 Query: 246 gccgcagtgagagcatggccaagaggaggtcaaagctgtctgctgc 291 || | ||||||||| |||| ||||||||||| ||||| |||||||| Sbjct: 719 gcaggagtgagagcttggcaaagaggaggtccaagctttctgctgc 764
>dbj|AK061827.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-C07, full insert sequence Length = 990 Score = 228 bits (115), Expect = 1e-56 Identities = 245/286 (85%), Gaps = 2/286 (0%) Strand = Plus / Plus Query: 6 aaccttggcaaggnatgatgatgtccgcagctatgtcaacacataccgcaggnaccttcc 65 ||||||| ||||| ||||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 480 aaccttgccaagg-atgatgatgtccgcaagtatgtcaacacttaccgcag-aaccttca 537 Query: 66 ttaacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactccct 125 || |||||| ||||||||||| ||||||||||| ||||||||| | ||||| |||||| Sbjct: 538 ctaccaagaacggcaagaaggttagcaaggctcctaagatccagaggcttgtcactcccc 597 Query: 126 tgaccctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaagaaga 185 |||| || ||||||||| | || ||||||||| | |||||| | || || |||||||||| Sbjct: 598 tgactcttcagaggaagagggcgagaatcgcccagaagaagcaaagaattgccaagaaga 657 Query: 186 agtcagaggctgcagagtaccagaagctgcttgcgcaaaggctgaaggagcagagagacc 245 |||| |||||||| |||||||||||||||||||| || ||||| ||||||||||| || | Sbjct: 658 agtccgaggctgccgagtaccagaagctgcttgcccagaggctcaaggagcagagggaac 717 Query: 246 gccgcagtgagagcatggccaagaggaggtcaaagctgtctgctgc 291 || | ||||||||| |||| ||||||||||| ||||| |||||||| Sbjct: 718 gcaggagtgagagcttggcaaagaggaggtccaagctttctgctgc 763
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 188 bits (95), Expect = 1e-44 Identities = 185/215 (86%) Strand = Plus / Minus Query: 77 ggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttgaccctccag 136 ||||||||||| ||||||||||| ||||||||| | ||||| |||||| |||| || ||| Sbjct: 15460856 ggcaagaaggttagcaaggctcctaagatccagaggcttgtcactcccctgactcttcag 15460797 Query: 137 aggaagcgtgccagaatcgccgacaagaagaagaggatcgccaagaagaagtcagaggct 196 |||||| | || ||||||||| | |||||| | || || |||||||||||||| |||||| Sbjct: 15460796 aggaagagggcgagaatcgcccagaagaagcaaagaattgccaagaagaagtccgaggct 15460737 Query: 197 gcagagtaccagaagctgcttgcgcaaaggctgaaggagcagagagaccgccgcagtgag 256 || |||||||||||||||||||| || ||||| ||||||||||| || ||| | |||||| Sbjct: 15460736 gccgagtaccagaagctgcttgcccagaggctcaaggagcagagggaacgcaggagtgag 15460677 Query: 257 agcatggccaagaggaggtcaaagctgtctgctgc 291 ||| |||| ||||||||||| ||||| |||||||| Sbjct: 15460676 agcttggcaaagaggaggtccaagctttctgctgc 15460642 Score = 54.0 bits (27), Expect = 5e-04 Identities = 46/51 (90%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 6 aaccttggcaaggnatgatgatgtccgcagctatgtcaacacataccgcag 56 ||||||| ||||| ||||||||||||||| ||||||||||| |||||||| Sbjct: 15461158 aaccttgccaagg-atgatgatgtccgcaagtatgtcaacacttaccgcag 15461109
>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete sequence Length = 164705 Score = 188 bits (95), Expect = 1e-44 Identities = 185/215 (86%) Strand = Plus / Plus Query: 77 ggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttgaccctccag 136 ||||||||||| ||||||||||| ||||||||| | ||||| |||||| |||| || ||| Sbjct: 40670 ggcaagaaggttagcaaggctcctaagatccagaggcttgtcactcccctgactcttcag 40729 Query: 137 aggaagcgtgccagaatcgccgacaagaagaagaggatcgccaagaagaagtcagaggct 196 |||||| | || ||||||||| | |||||| | || || |||||||||||||| |||||| Sbjct: 40730 aggaagagggcgagaatcgcccagaagaagcaaagaattgccaagaagaagtccgaggct 40789 Query: 197 gcagagtaccagaagctgcttgcgcaaaggctgaaggagcagagagaccgccgcagtgag 256 || |||||||||||||||||||| || ||||| ||||||||||| || ||| | |||||| Sbjct: 40790 gccgagtaccagaagctgcttgcccagaggctcaaggagcagagggaacgcaggagtgag 40849 Query: 257 agcatggccaagaggaggtcaaagctgtctgctgc 291 ||| |||| ||||||||||| ||||| |||||||| Sbjct: 40850 agcttggcaaagaggaggtccaagctttctgctgc 40884 Score = 54.0 bits (27), Expect = 5e-04 Identities = 46/51 (90%), Gaps = 1/51 (1%) Strand = Plus / Plus Query: 6 aaccttggcaaggnatgatgatgtccgcagctatgtcaacacataccgcag 56 ||||||| ||||| ||||||||||||||| ||||||||||| |||||||| Sbjct: 40368 aaccttgccaagg-atgatgatgtccgcaagtatgtcaacacttaccgcag 40417
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 188 bits (95), Expect = 1e-44 Identities = 185/215 (86%) Strand = Plus / Minus Query: 77 ggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttgaccctccag 136 ||||||||||| ||||||||||| ||||||||| | ||||| |||||| |||| || ||| Sbjct: 15455390 ggcaagaaggttagcaaggctcctaagatccagaggcttgtcactcccctgactcttcag 15455331 Query: 137 aggaagcgtgccagaatcgccgacaagaagaagaggatcgccaagaagaagtcagaggct 196 |||||| | || ||||||||| | |||||| | || || |||||||||||||| |||||| Sbjct: 15455330 aggaagagggcgagaatcgcccagaagaagcaaagaattgccaagaagaagtccgaggct 15455271 Query: 197 gcagagtaccagaagctgcttgcgcaaaggctgaaggagcagagagaccgccgcagtgag 256 || |||||||||||||||||||| || ||||| ||||||||||| || ||| | |||||| Sbjct: 15455270 gccgagtaccagaagctgcttgcccagaggctcaaggagcagagggaacgcaggagtgag 15455211 Query: 257 agcatggccaagaggaggtcaaagctgtctgctgc 291 ||| |||| ||||||||||| ||||| |||||||| Sbjct: 15455210 agcttggcaaagaggaggtccaagctttctgctgc 15455176 Score = 54.0 bits (27), Expect = 5e-04 Identities = 46/51 (90%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 6 aaccttggcaaggnatgatgatgtccgcagctatgtcaacacataccgcag 56 ||||||| ||||| ||||||||||||||| ||||||||||| |||||||| Sbjct: 15455692 aaccttgccaagg-atgatgatgtccgcaagtatgtcaacacttaccgcag 15455643
>ref|NM_121074.2| Arabidopsis thaliana EMB3010; structural constituent of ribosome AT5G10360 (EMB3010) mRNA, complete cds Length = 1095 Score = 139 bits (70), Expect = 1e-29 Identities = 103/114 (90%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 |||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||| ||| Sbjct: 587 aacaagaagggcaagaaggttagcaaggctcctaagatccagaggcttgtgactccattg 646 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaag 181 ||||||||||||||| | || ||||| || |||||||||||||| ||||||||| Sbjct: 647 accctccagaggaagagagctagaattgctgacaagaagaagagaatcgccaag 700
>gb|AY093783.1| Arabidopsis thaliana AT5g10360/F12B17_290 mRNA, complete cds Length = 750 Score = 139 bits (70), Expect = 1e-29 Identities = 103/114 (90%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 |||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||| ||| Sbjct: 502 aacaagaagggcaagaaggttagcaaggctcctaagatccagaggcttgtgactccattg 561 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaag 181 ||||||||||||||| | || ||||| || |||||||||||||| ||||||||| Sbjct: 562 accctccagaggaagagagctagaattgctgacaagaagaagagaatcgccaag 615
>gb|AY057634.1| Arabidopsis thaliana AT5g10360/F12B17_290 mRNA, complete cds Length = 993 Score = 139 bits (70), Expect = 1e-29 Identities = 103/114 (90%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 |||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||| ||| Sbjct: 587 aacaagaagggcaagaaggttagcaaggctcctaagatccagaggcttgtgactccattg 646 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaag 181 ||||||||||||||| | || ||||| || |||||||||||||| ||||||||| Sbjct: 647 accctccagaggaagagagctagaattgctgacaagaagaagagaatcgccaag 700
>gb|AY045594.1| Arabidopsis thaliana AT5g10360/F12B17_290 mRNA, complete cds Length = 993 Score = 139 bits (70), Expect = 1e-29 Identities = 103/114 (90%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 |||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||| ||| Sbjct: 587 aacaagaagggcaagaaggttagcaaggctcctaagatccagaggcttgtgactccattg 646 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaag 181 ||||||||||||||| | || ||||| || |||||||||||||| ||||||||| Sbjct: 647 accctccagaggaagagagctagaattgctgacaagaagaagagaatcgccaag 700
>emb|BX832002.1|CNS0A26R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH45ZC11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 969 Score = 139 bits (70), Expect = 1e-29 Identities = 103/114 (90%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 |||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||| ||| Sbjct: 570 aacaagaagggcaagaaggttagcaaggctcctaagatccagaggcttgtgactccattg 629 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaag 181 ||||||||||||||| | || ||||| || |||||||||||||| ||||||||| Sbjct: 630 accctccagaggaagagagctagaattgctgacaagaagaagagaatcgccaag 683
>emb|BX830696.1|CNS0A0OB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS15ZE05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 947 Score = 139 bits (70), Expect = 1e-29 Identities = 103/114 (90%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 |||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||| ||| Sbjct: 568 aacaagaagggcaagaaggttagcaaggctcctaagatccagaggcttgtgactccattg 627 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaag 181 ||||||||||||||| | || ||||| || |||||||||||||| ||||||||| Sbjct: 628 accctccagaggaagagagctagaattgctgacaagaagaagagaatcgccaag 681
>emb|BX832475.1|CNS0A24D Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH75ZG03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 645 Score = 131 bits (66), Expect = 3e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 |||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||| || Sbjct: 238 aacaagaagggcaagaaggttagcaaggctcctaagatccagaggcttgtgactccattt 297 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaag 181 ||||||||||||||| | || ||||| || |||||||||||||| ||||||||| Sbjct: 298 accctccagaggaagagagctagaattgctgacaagaagaagagaatcgccaag 351
>emb|BX832457.1|CNS0A241 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH74ZH01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 689 Score = 131 bits (66), Expect = 3e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 |||||||||||||||||||| ||||||||||| ||||||||| | ||||| ||||| ||| Sbjct: 248 aacaagaagggcaagaaggttagcaaggctcctaagatccagaggcttgttactccattg 307 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaag 181 ||||||||||||||| | || ||||| || |||||||||||||| ||||||||| Sbjct: 308 accctccagaggaagagagctagaattgctgacaagaagaagagaatcgccaag 361
>emb|BX829995.1|CNS0A1FC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB52ZB07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 981 Score = 131 bits (66), Expect = 3e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 |||||||||||||||||||| ||||||||||| ||||||||| | ||||| ||||| ||| Sbjct: 568 aacaagaagggcaagaaggttagcaaggctcctaagatccagaggcttgtaactccattg 627 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaag 181 ||||||||||||||| | || ||||| || |||||||||||||| ||||||||| Sbjct: 628 accctccagaggaagagagctagaattgctgacaagaagaagagaatcgccaag 681
>emb|Y14052.1|ATY14052 Arabidopsis thaliana mRNA for ribosomal protein S6 Length = 957 Score = 131 bits (66), Expect = 3e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 |||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||| ||| Sbjct: 502 aacaagaagggcaagaaggttagcaaggctcctaagatccagaggcttgtgactccattg 561 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaag 181 ||||||||||||||| | || ||||| || |||||||||||||| || |||||| Sbjct: 562 accctccagaggaagagagctagaattgctgacaagaagaagagaatagccaag 615
>emb|AL353995.1|ATF12B17 Arabidopsis thaliana DNA chromosome 5, BAC clone F12B17 (ESSA project) Length = 113053 Score = 121 bits (61), Expect = 2e-24 Identities = 94/105 (89%) Strand = Plus / Plus Query: 77 ggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttgaccctccag 136 ||||||||||| ||||||||||| ||||||||| | ||||||||||| |||||||||||| Sbjct: 105888 ggcaagaaggttagcaaggctcctaagatccagaggcttgtgactccattgaccctccag 105947 Query: 137 aggaagcgtgccagaatcgccgacaagaagaagaggatcgccaag 181 |||||| | || ||||| || |||||||||||||| ||||||||| Sbjct: 105948 aggaagagagctagaattgctgacaagaagaagagaatcgccaag 105992
>gb|AY293401.1| Brassica napus ribosomal protein S6 (RPS6) mRNA, complete cds Length = 980 Score = 117 bits (59), Expect = 4e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 |||||||| |||||| | |||||||| ||||||||||||||| | ||||||||||| ||| Sbjct: 559 aacaagaaaggcaaggaagtgagcaaagctcccaagatccagaggcttgtgactccgttg 618 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaagaggat 174 ||||| ||||||||| | || |||||||| ||||||||||||||||| Sbjct: 619 acccttcagaggaagagagctagaatcgctgacaagaagaagaggat 665
>emb|AJ277533.1|AOF277533 Asparagus officinalis mRNA for S6 ribosomal protein (rps6 gene) Length = 959 Score = 115 bits (58), Expect = 2e-22 Identities = 218/270 (80%), Gaps = 1/270 (0%) Strand = Plus / Plus Query: 22 gatgatgtccgcagctatgtcaacacataccgcaggnaccttccttaacaagaagggcaa 81 |||||||| |||| ||||||||||| ||||| ||| |||||| ||||||||| || || Sbjct: 482 gatgatgtacgcaagtatgtcaacacttaccgtagg-accttcactaacaagaaaggaaa 540 Query: 82 gaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttgaccctccagaggaa 141 || || ||||| || || |||||| | |||||||||||||||||| | || ||||| Sbjct: 541 gacctgcagtaaggcaccaaaaatccagaggcttgtgactcccttgaccttgcaaaggaa 600 Query: 142 gcgtgccagaatcgccgacaagaagaagaggatcgccaagaagaagtcagaggctgcaga 201 ||| |||||||| || || ||||||||||| | |||||| || || || |||||||| Sbjct: 601 gcgagccagaattgcagagaagaagaagagagttgccaaggccaaatctgaagctgcaga 660 Query: 202 gtaccagaagctgcttgcgcaaaggctgaaggagcagagagaccgccgcagtgagagcat 261 ||||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||| | Sbjct: 661 ataccagaagctccttgcctcgaggctcaaggagcagagggaccgacgcagtgagagctt 720 Query: 262 ggccaagaggaggtcaaagctgtctgctgc 291 ||| |||| |||||| | ||| |||||||| Sbjct: 721 ggcaaagaagaggtccaggctctctgctgc 750
>gb|AC155341.1| Brassica rapa subsp. pekinensis chromosome 6 clone KBrH004D11, complete sequence Length = 106476 Score = 99.6 bits (50), Expect = 9e-18 Identities = 170/210 (80%) Strand = Plus / Minus Query: 67 taacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactccctt 126 ||||||||| || ||| | |||||||| || |||||||||||| | ||||||||||| || Sbjct: 89460 taacaagaaaggtaaggaagtgagcaaagcccccaagatccagaggcttgtgactccttt 89401 Query: 127 gaccctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaagaagaa 186 ||| || ||||||||| | || ||||| |||||||||||||||||||| || ||| || Sbjct: 89400 gactcttcagaggaagagagctagaattgccgacaagaagaagaggattgctaaggctaa 89341 Query: 187 gtcagaggctgcagagtaccagaagctgcttgcgcaaaggctgaaggagcagagagaccg 246 | || || || |||||||||||||| || || ||||| ||||||||| | || || Sbjct: 89340 cgctgatgcggctgagtaccagaagcttctcgcctccaggcttaaggagcagcgtgatcg 89281 Query: 247 ccgcagtgagagcatggccaagaggaggtc 276 ||| |||||||| ||||||||| |||||| Sbjct: 89280 ccgtagtgagagtttggccaagaagaggtc 89251
>gb|AY105798.1| Zea mays PCO089449 mRNA sequence Length = 777 Score = 95.6 bits (48), Expect = 1e-16 Identities = 123/146 (84%), Gaps = 4/146 (2%) Strand = Plus / Plus Query: 102 agatccagcgtcttgtgactcccttgaccctccagaggaagcgtgccagaatcgccgaca 161 |||||||| | |||||||| ||||||||||| |||||||||| | ||| || | || Sbjct: 591 agatccagtggcttgtgac-cccttgaccctttagaggaagcgcactagagtcattggca 649 Query: 162 agaagaagaggatcgccaagaagaagtcagaggctgcagagtaccagaagctgcttgcgc 221 ||||||||||||||||||||||| || |||||||| |||||||| ||||| ||||| | Sbjct: 650 agaagaagaggatcgccaagaag---tctgaggctgccgagtaccaaaagcttcttgctc 706 Query: 222 aaaggctgaaggagcagagagaccgc 247 | ||||||||||| |||||||||||| Sbjct: 707 agaggctgaaggaacagagagaccgc 732
>gb|AY453394.1| Glycine max ribosomal protein S6 (RPS6) mRNA, complete cds Length = 1020 Score = 93.7 bits (47), Expect = 6e-16 Identities = 119/143 (83%) Strand = Plus / Plus Query: 140 aagcgtgccagaatcgccgacaagaagaagaggatcgccaagaagaagtcagaggctgca 199 ||||| || ||||| || || |||||||||||||| |||||| || || ||||| ||| Sbjct: 636 aagcgggcaagaattgctgataagaagaagaggattgccaaggcaaaatctgaggcagca 695 Query: 200 gagtaccagaagctgcttgcgcaaaggctgaaggagcagagagaccgccgcagtgagagc 259 ||||||||||| || ||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 696 gagtaccagaaactccttgcctccaggttgaaggagcagagagaccgccgcagtgagagt 755 Query: 260 atggccaagaggaggtcaaagct 282 |||| |||||||| || ||||| Sbjct: 756 ttggctaagaggagatccaagct 778
>emb|BX831797.1|CNS0A23Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH2ZH10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 692 Score = 93.7 bits (47), Expect = 6e-16 Identities = 99/115 (86%), Gaps = 1/115 (0%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatcca-gcgtcttgtgactccctt 126 |||||||||||||||||||| ||||||| ||| |||||||| || | |||||||| || Sbjct: 249 aacaagaagggcaagaaggttagcaagggtcctaagatccacacgcttggtgactccatt 308 Query: 127 gaccctccagaggaagcgtgccagaatcgccgacaagaagaagaggatcgccaag 181 ||||||||||||||| | || ||||| || |||||||||||||| ||||||||| Sbjct: 309 taccctccagaggaagagagctagaattgctgacaagaagaagagaatcgccaag 363
>gb|DQ191669.1| Solanum tuberosum ribosomal protein S6-like protein mRNA, complete cds Length = 1032 Score = 83.8 bits (42), Expect = 5e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 84 aggtgagcaaggctcccaagatccagcgtcttgtgactcccttgaccctccagaggaagc 143 |||| ||||||||||| ||||||||| | || || || || ||||| |||||||||||| Sbjct: 569 aggttagcaaggctcctaagatccagaggctggtaacaccattgactctccagaggaaga 628 Query: 144 gtgccagaatcgccgacaagaagaagaggatcgccaagaagaagtcagaggctgcagagt 203 | || ||||| ||||||||||||||||| || |||||| |||||||| ||||| || | Sbjct: 629 gagcaagaattgccgacaagaagaagagaattgccaaggctaagtcagaagctgctgatt 688 Query: 204 accagaagct 213 | |||||||| Sbjct: 689 atcagaagct 698
>ref|NM_119319.3| Arabidopsis thaliana RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome AT4G31700 (RPS6) mRNA, complete cds Length = 993 Score = 69.9 bits (35), Expect = 8e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 ||||||||||||||| | || ||||| || || ||||||||| | |||||||| || ||| Sbjct: 513 aacaagaagggcaaggaagttagcaaagcccctaagatccagaggcttgtgaccccattg 572 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaaga 170 || || ||||||||| | || ||||| || ||||||||||||| Sbjct: 573 actcttcagaggaagagagctagaattgctgacaagaagaaga 615
>gb|BT000693.1| Arabidopsis thaliana clone RAFL07-09-P18 (R10989) putative ribosomal protein S6 (At4g31700) mRNA, complete cds Length = 962 Score = 69.9 bits (35), Expect = 8e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 ||||||||||||||| | || ||||| || || ||||||||| | |||||||| || ||| Sbjct: 515 aacaagaagggcaaggaagttagcaaagcccctaagatccagaggcttgtgaccccattg 574 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaaga 170 || || ||||||||| | || ||||| || ||||||||||||| Sbjct: 575 actcttcagaggaagagagctagaattgctgacaagaagaaga 617
>gb|AY113983.1| Arabidopsis thaliana putative ribosomal protein S6 (At4g31700) mRNA, complete cds Length = 784 Score = 69.9 bits (35), Expect = 8e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 ||||||||||||||| | || ||||| || || ||||||||| | |||||||| || ||| Sbjct: 502 aacaagaagggcaaggaagttagcaaagcccctaagatccagaggcttgtgaccccattg 561 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaaga 170 || || ||||||||| | || ||||| || ||||||||||||| Sbjct: 562 actcttcagaggaagagagctagaattgctgacaagaagaaga 604
>gb|AY050803.1| Arabidopsis thaliana putative ribosomal protein S6 (At4g31700) mRNA, complete cds Length = 989 Score = 69.9 bits (35), Expect = 8e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 ||||||||||||||| | || ||||| || || ||||||||| | |||||||| || ||| Sbjct: 509 aacaagaagggcaaggaagttagcaaagcccctaagatccagaggcttgtgaccccattg 568 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaaga 170 || || ||||||||| | || ||||| || ||||||||||||| Sbjct: 569 actcttcagaggaagagagctagaattgctgacaagaagaaga 611
>emb|BX826399.1|CNS0A4KZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB21ZD05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 938 Score = 69.9 bits (35), Expect = 8e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 ||||||||||||||| | || ||||| || || ||||||||| | |||||||| || ||| Sbjct: 498 aacaagaagggcaaggaagttagcaaagcccctaagatccagaggcttgtgaccccattg 557 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaaga 170 || || ||||||||| | || ||||| || ||||||||||||| Sbjct: 558 actcttcagaggaagagagctagaattgctgacaagaagaaga 600
>emb|BX827692.1|CNS0A3WM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH10ZH02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 580 Score = 69.9 bits (35), Expect = 8e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 ||||||||||||||| | || ||||| || || ||||||||| | |||||||| || ||| Sbjct: 120 aacaagaagggcaaggaagttagcaaagcccctaagatccagaggcttgtgaccccattg 179 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaaga 170 || || ||||||||| | || ||||| || ||||||||||||| Sbjct: 180 actcttcagaggaagagagctagaattgctgacaagaagaaga 222
>emb|AJ010227.1|CAR010227 Cicer arietinum mRNA for 40S ribosomal protein S6, partial Length = 920 Score = 69.9 bits (35), Expect = 8e-09 Identities = 149/187 (79%) Strand = Plus / Plus Query: 83 aaggtgagcaaggctcccaagatccagcgtcttgtgactcccttgaccctccagaggaag 142 ||||| ||||| ||||| ||||| ||||| | || ||||| ||||| ||||| |||||| Sbjct: 407 aaggttagcaaagctccaaagatacagcgattggtcactcctttgacactccaaaggaag 466 Query: 143 cgtgccagaatcgccgacaagaagaagaggatcgccaagaagaagtcagaggctgcagag 202 || || ||||| || || ||||||||||| || |||||| || |||||||| |||||| Sbjct: 467 cgagcaagaattgcagataagaagaagagaattgccaaggcaaaatcagaggcagcagag 526 Query: 203 taccagaagctgcttgcgcaaaggctgaaggagcagagagaccgccgcagtgagagcatg 262 || || || || ||||| || ||||||||||||| || ||||| ||||||||| || Sbjct: 527 tatcaaaaactccttgcatccagattgaaggagcagagggaacgccgaagtgagagcttg 586 Query: 263 gccaaga 269 || |||| Sbjct: 587 gcaaaga 593
>gb|AF034217.1|AF034217 Arabidopsis thaliana ribosomal protein S6 (rps6) mRNA, complete cds Length = 945 Score = 69.9 bits (35), Expect = 8e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggtgagcaaggctcccaagatccagcgtcttgtgactcccttg 127 ||||||||||||||| | || ||||| || || ||||||||| | |||||||| || ||| Sbjct: 502 aacaagaagggcaaggaagttagcaaagcccctaagatccagaggcttgtgaccccattg 561 Query: 128 accctccagaggaagcgtgccagaatcgccgacaagaagaaga 170 || || ||||||||| | || ||||| || ||||||||||||| Sbjct: 562 actcttcagaggaagagagctagaattgctgacaagaagaaga 604
>gb|BT014365.1| Lycopersicon esculentum clone 133651F, mRNA sequence Length = 1065 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 84 aggtgagcaaggctcccaagatccagcgtcttgtgactcccttgaccctccagaggaagc 143 |||| ||||||||||| ||||||||| | || || || || ||||| || ||||||||| Sbjct: 589 aggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaaga 648 Query: 144 gtgccagaatcgccgacaagaagaagaggatcgccaag 181 | || |||||||| |||||||||||||| || |||||| Sbjct: 649 gagcaagaatcgctgacaagaagaagagaattgccaag 686
>ref|XM_751713.1| Ustilago maydis 521 hypothetical protein (UM00659.1) partial mRNA Length = 789 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtcttgtgac 120 |||||||||||||||||||||||||||||| Sbjct: 582 caaggctcccaagatccagcgtcttgtgac 611
>ref|XM_570222.1| Cryptococcus neoformans var. neoformans JEC21 40s ribosomal protein s6-b (CND02780) partial mRNA Length = 825 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtcttgtgactcccttgaccctccagaggaagcg 144 |||||| |||||||||||||||||||| || |||||| |||||||||||||| Sbjct: 534 caaggcccccaagatccagcgtcttgtcacccccttgcgtctccagaggaagcg 587
>ref|XM_654476.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1964.2), mRNA Length = 714 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtcttgtgactccc 124 |||||| ||||||||||||||||| ||||||||| Sbjct: 513 caaggcccccaagatccagcgtctggtgactccc 546
>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75 Length = 196242 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 101 aagatccagcgtcttgtgactcccttgaccctccagaggaagcgtgccagaatcgccgac 160 ||||||||| | |||||||| || ||||| || ||||||||| | || ||||| || ||| Sbjct: 112468 aagatccagaggcttgtgaccccattgactcttcagaggaagagagctagaattgctgac 112409 Query: 161 aagaagaaga 170 |||||||||| Sbjct: 112408 aagaagaaga 112399
>emb|AL031004.1|ATF28M20 Arabidopsis thaliana DNA chromosome 4, BAC clone F28M20 (ESSAII project) Length = 90902 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 101 aagatccagcgtcttgtgactcccttgaccctccagaggaagcgtgccagaatcgccgac 160 ||||||||| | |||||||| || ||||| || ||||||||| | || ||||| || ||| Sbjct: 40803 aagatccagaggcttgtgaccccattgactcttcagaggaagagagctagaattgctgac 40862 Query: 161 aagaagaaga 170 |||||||||| Sbjct: 40863 aagaagaaga 40872
>dbj|AK109085.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-H09, full insert sequence Length = 1049 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 189 cagaggctgcagagtaccagaagctgcttgcgcaaaggctgaaggagcag 238 ||||||| ||||||||||| |||||||| | || ||||||||||||||| Sbjct: 682 cagaggcagcagagtaccacaagctgctcgtccagaggctgaaggagcag 731
>gb|AF294917.1|AF294917 Aplysia californica ribosomal protein S6 mRNA, complete cds Length = 760 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 88 gagcaaggctcccaagatccagcgtcttgtgac 120 ||||||||| ||||||||||||||||| ||||| Sbjct: 517 gagcaaggcccccaagatccagcgtctggtgac 549
>gb|BT014411.1| Lycopersicon esculentum clone 133718F, mRNA sequence Length = 1067 Score = 48.1 bits (24), Expect = 0.030 Identities = 102/128 (79%) Strand = Plus / Plus Query: 149 agaatcgccgacaagaagaagaggatcgccaagaagaagtcagaggctgcagagtaccag 208 ||||| || |||||||||||||| || |||||| ||||||||||| || || || ||| Sbjct: 646 agaattgctgacaagaagaagagaattgccaaggctaagtcagaggcagctgattatcag 705 Query: 209 aagctgcttgcgcaaaggctgaaggagcagagagaccgccgcagtgagagcatggccaag 268 ||||| ||||| ||| ||||||| || ||||| || || |||||||| |||| ||| Sbjct: 706 aagcttcttgctagtaggttgaaggaacaaagagaacgacgtagtgagagtttggctaag 765 Query: 269 aggaggtc 276 | |||||| Sbjct: 766 aagaggtc 773
>gb|AF154066.1|AF154066 Aedes albopictus ribosomal protein S6 (rpS6) mRNA, complete cds Length = 1050 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtct 114 |||||||||||||||||||||||| Sbjct: 516 caaggctcccaagatccagcgtct 539
>gb|AF525803.1| Chlamys farreri ribosomal protein S6-like mRNA, partial sequence Length = 554 Score = 48.1 bits (24), Expect = 0.030 Identities = 30/32 (93%) Strand = Plus / Plus Query: 92 aaggctcccaagatccagcgtcttgtgactcc 123 ||||| |||||||||||||| ||||||||||| Sbjct: 269 aaggcccccaagatccagcgacttgtgactcc 300
>dbj|AP006076.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT19M07, TM0114, complete sequence Length = 94533 Score = 48.1 bits (24), Expect = 0.030 Identities = 138/176 (78%) Strand = Plus / Plus Query: 83 aaggtgagcaaggctcccaagatccagcgtcttgtgactcccttgaccctccagaggaag 142 ||||||||||| ||||| ||||| ||||| | || ||||| |||| || || |||||| Sbjct: 19405 aaggtgagcaaagctcctaagattcagcgattggtcactcctctgacacttcaaaggaag 19464 Query: 143 cgtgccagaatcgccgacaagaagaagaggatcgccaagaagaagtcagaggctgcagag 202 | || ||||| || || ||||||||||| || ||||| || |||||||| ||||| Sbjct: 19465 agggcaagaattgcagataagaagaagagaattgccaaagcaaaatcagaggcagcagaa 19524 Query: 203 taccagaagctgcttgcgcaaaggctgaaggagcagagagaccgccgcagtgagag 258 |||||||| || ||||| ||| ||||||||||||| || ||||| || ||||| Sbjct: 19525 taccagaaactacttgcctccaggttgaaggagcagagggaacgccgtagcgagag 19580
>gb|AY389950.1| Protopterus dolloi ribosomal protein S6 mRNA, partial cds Length = 691 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 92 aaggctcccaagatccagcgtct 114 ||||||||||||||||||||||| Sbjct: 488 aaggctcccaagatccagcgtct 510
>gb|AC146855.5| Medicago truncatula clone mth2-16c23, complete sequence Length = 137979 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 228 tgaaggagcagagagaccgccgcagtgagag 258 ||||||||||||| || |||||||||||||| Sbjct: 134350 tgaaggagcagagggaacgccgcagtgagag 134320
>gb|AC149801.3| Medicago truncatula chromosome 2 BAC clone mth2-32i15, complete sequence Length = 96221 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 228 tgaaggagcagagagaccgccgcagtgagag 258 ||||||||||||| || |||||||||||||| Sbjct: 95203 tgaaggagcagagggaacgccgcagtgagag 95233
>emb|X68050.1|NTRPS6 N.tabacum mRNA for ribosomal protein S6 Length = 804 Score = 46.1 bits (23), Expect = 0.12 Identities = 104/131 (79%) Strand = Plus / Minus Query: 89 agcaaggctcccaagatccagcgtcttgtgactcccttgaccctccagaggaagcgtgcc 148 ||||| ||||| ||||| ||| | |||||||| |||||||| || || || ||| | || Sbjct: 430 agcaaagctcctaagattcagaggcttgtgacacccttgactcttcaaagaaagagggca 371 Query: 149 agaatcgccgacaagaagaagaggatcgccaagaagaagtcagaggctgcagagtaccag 208 ||||| || || ||||||||||| || |||||| ||||| ||||| || || || ||| Sbjct: 370 agaattgctgataagaagaagagaattgccaaggctaagtcggaggcagctgaatatcag 311 Query: 209 aagctgcttgc 219 ||||| ||||| Sbjct: 310 aagcttcttgc 300
>gb|DQ241846.1| Solanum tuberosum clone 186G09 unknown mRNA Length = 1056 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Plus Query: 149 agaatcgccgacaagaagaagaggatcgccaagaagaagtcagaggctgcagagtaccag 208 ||||| || |||||||||||||| || |||||| ||||||||||| || || || ||| Sbjct: 630 agaattgctgacaagaagaagagaattgccaaggctaagtcagaggcagctgattatcag 689 Query: 209 aagctgcttgc 219 ||||| ||||| Sbjct: 690 aagcttcttgc 700
>ref|XM_867656.1| PREDICTED: Bos taurus similar to 40S ribosomal protein S6 (LOC508350), partial mRNA Length = 709 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 98 cccaagatccagcgtcttgtgactcc 123 |||||||| ||||||||||||||||| Sbjct: 439 cccaagattcagcgtcttgtgactcc 464
>ref|XM_329546.1| Neurospora crassa OR74A hypothetical protein (NCU08502.1) partial mRNA Length = 720 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtcttgtgactccc 124 ||||||||||||||||||||| || || |||||| Sbjct: 519 caaggctcccaagatccagcgcctcgtcactccc 552
>ref|XM_958338.1| Neurospora crassa OR74A hypothetical protein (NCU08502.1) partial mRNA Length = 720 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtcttgtgactccc 124 ||||||||||||||||||||| || || |||||| Sbjct: 519 caaggctcccaagatccagcgcctcgtcactccc 552
>ref|XM_746654.1| Aspergillus fumigatus Af293 40S ribosomal protein S6 (Afu4g10800) partial mRNA Length = 714 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtcttgtgactccc 124 |||||| ||||||||||||||||| || |||||| Sbjct: 513 caaggcccccaagatccagcgtctggtcactccc 546
>emb|BX842594.1| Neurospora crassa DNA linkage group II BAC clone B18P7 Length = 95637 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Minus Query: 91 caaggctcccaagatccagcgtcttgtgactccc 124 ||||||||||||||||||||| || || |||||| Sbjct: 44345 caaggctcccaagatccagcgcctcgtcactccc 44312
>emb|AL590605.1|SPAPB1E7 S.pombe chromosome I BAC pB1E7 Length = 41788 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtcttgtgactccc 124 ||||||||||||||| || |||||||| |||||| Sbjct: 37727 caaggctcccaagattcaacgtcttgtcactccc 37760
>emb|AL646047.9| Mouse DNA sequence from clone RP23-69P8 on chromosome 11 Contains the Myo1g gene for myosin 1G, a novel gene, a ribosomal protein L21 (Rpl21) pseudogene, the 5' end of a novel gene and two CpG islands, complete sequence Length = 93553 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 70 caagaagggcaagaaggtgagc 91 |||||||||||||||||||||| Sbjct: 51984 caagaagggcaagaaggtgagc 52005
>ref|NM_001019562.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAPB1E7.12), partial mRNA Length = 720 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtcttgtgactccc 124 ||||||||||||||| || |||||||| |||||| Sbjct: 519 caaggctcccaagattcaacgtcttgtcactccc 552
>gb|AC004847.3|AC004847 Homo sapiens clone RP4-647J21, complete sequence Length = 122280 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 70 caagaagggcaagaaggtgagc 91 |||||||||||||||||||||| Sbjct: 42408 caagaagggcaagaaggtgagc 42387
>gb|AE007306.1| Sinorhizobium meliloti 1021 plasmid pSymA section 112 of 121 of the complete plasmid sequence Length = 11758 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 452 ttcttgtgtttgtacttgatg 472 ||||||||||||||||||||| Sbjct: 1114 ttcttgtgtttgtacttgatg 1094
>ref|NM_205225.1| Gallus gallus ribosomal protein S6 (RPS6), mRNA Length = 894 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtcttgtgactcc 123 ||||||||| ||||||||||| || |||||||| Sbjct: 532 caaggctcctaagatccagcgactagtgactcc 564
>emb|X81968.1|GGRPRTS6 G.gallus mRNA for ribosomal protein S6 Length = 894 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtcttgtgactcc 123 ||||||||| ||||||||||| || |||||||| Sbjct: 532 caaggctcctaagatccagcgactagtgactcc 564
>gb|AF208228.1|AF208228 Gallus gallus ribosomal protein S6 mRNA, partial cds Length = 814 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtcttgtgactcc 123 ||||||||| ||||||||||| || |||||||| Sbjct: 509 caaggctcctaagatccagcgactagtgactcc 541
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 154 cgccgacaagaagaagaggatcgcc 178 ||||||||||||||||| ||||||| Sbjct: 3860261 cgccgacaagaagaagacgatcgcc 3860237
>gb|AC132082.3| Mus musculus BAC clone RP24-511K23 from 1, complete sequence Length = 165033 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 gctcctgctgcctctgcttaa 319 ||||||||||||||||||||| Sbjct: 1347 gctcctgctgcctctgcttaa 1327
>gb|AC124553.4| Mus musculus BAC clone RP23-223I5 from 1, complete sequence Length = 179316 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 gctcctgctgcctctgcttaa 319 ||||||||||||||||||||| Sbjct: 24695 gctcctgctgcctctgcttaa 24715
>gb|U64795.1|MSU64795 Manduca sexta ribosomal protein S6 mRNA, complete cds Length = 826 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcg 111 ||||||||||||||||||||| Sbjct: 558 caaggctcccaagatccagcg 578
>dbj|D29796.1|XELXCFB Xenopus laevis mRNA for complement factor B Length = 3259 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 aagaggaggtcaaagctgtct 286 ||||||||||||||||||||| Sbjct: 1962 aagaggaggtcaaagctgtct 1982
>dbj|D49373.1|XELBFB Xenopus laevis mRNA for Bf B (complement factor B), complete cds Length = 2451 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 aagaggaggtcaaagctgtct 286 ||||||||||||||||||||| Sbjct: 1946 aagaggaggtcaaagctgtct 1966
>ref|XM_524474.1| PREDICTED: Pan troglodytes similar to protein tyrosine phosphatase, receptor type, sigma isoform 1 precursor; protein tyrosine phosphatase PTPsigma (LOC469089), mRNA Length = 2142 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggt 87 |||||||||||||||||||| Sbjct: 1144 aacaagaagggcaagaaggt 1163
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 412 tggctactttattgtcggaagttt 435 |||||||||| ||||||||||||| Sbjct: 1893819 tggctacttttttgtcggaagttt 1893842
>gb|AC092189.3| Drosophila melanogaster clone BACR34M11, complete sequence Length = 168540 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 agaagaggatcgccaagaag 184 |||||||||||||||||||| Sbjct: 18658 agaagaggatcgccaagaag 18677
>gb|AY485613.1| Pichia guilliermondii DNA-dependent RNA polymerase II second largest subunit gene, partial cds Length = 3710 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ttttgcgtgaacatggctac 418 |||||||||||||||||||| Sbjct: 3253 ttttgcgtgaacatggctac 3272
>gb|AC158347.4| Mus musculus chromosome 3, clone RP23-380F8, complete sequence Length = 193489 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tcccttgaccctccagagga 140 |||||||||||||||||||| Sbjct: 136119 tcccttgaccctccagagga 136138
>ref|XR_003042.1| PREDICTED: Mus musculus similar to putative pheromone receptor (Go-VN5) (LOC670595), mRNA Length = 2879 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 270 ggaggtcaaagctgtctgctgctacaaa 297 ||||| ||| |||||||||||||||||| Sbjct: 1456 ggagggcaatgctgtctgctgctacaaa 1483
>ref|XM_913431.2| PREDICTED: Mus musculus similar to putative pheromone receptor (Go-VN5) (LOC627743), mRNA Length = 2961 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 270 ggaggtcaaagctgtctgctgctacaaa 297 ||||| ||| |||||||||||||||||| Sbjct: 1539 ggagggcaatgctgtctgctgctacaaa 1566
>ref|XM_892444.2| PREDICTED: Mus musculus similar to putative pheromone receptor (Go-VN5) (LOC627743), mRNA Length = 2877 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 270 ggaggtcaaagctgtctgctgctacaaa 297 ||||| ||| |||||||||||||||||| Sbjct: 1455 ggagggcaatgctgtctgctgctacaaa 1482
>ref|XM_542148.2| PREDICTED: Canis familiaris similar to protein tyrosine phosphatase, receptor type, sigma isoform 2 precursor (LOC485030), mRNA Length = 5990 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggt 87 |||||||||||||||||||| Sbjct: 440 aacaagaagggcaagaaggt 459
>emb|CR382284.13| Zebrafish DNA sequence from clone DKEY-95H16 in linkage group 8, complete sequence Length = 205882 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 atttaccatgaacatggtga 494 |||||||||||||||||||| Sbjct: 163092 atttaccatgaacatggtga 163073
>gb|AC126263.4| Mus musculus BAC clone RP23-359P12 from chromosome 8, complete sequence Length = 223991 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 gtgagagcatggccaagagg 271 |||||||||||||||||||| Sbjct: 82354 gtgagagcatggccaagagg 82373
>gb|AY223014.1| Schistosoma japonicum clone ZZD1110 mRNA sequence Length = 1288 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 ccagaagctgcttgcgcaaa 224 |||||||||||||||||||| Sbjct: 147 ccagaagctgcttgcgcaaa 128
>ref|XM_775406.1| PREDICTED: Strongylocentrotus purpuratus similar to 40S ribosomal protein S6, transcript variant 1 (LOC577989), mRNA Length = 940 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtct 114 |||||| ||||||||||||||||| Sbjct: 541 caaggcacccaagatccagcgtct 564
>ref|XM_796910.1| PREDICTED: Strongylocentrotus purpuratus similar to 40S ribosomal protein S6, transcript variant 5 (LOC577989), mRNA Length = 916 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtct 114 |||||| ||||||||||||||||| Sbjct: 517 caaggcacccaagatccagcgtct 540
>gb|BC029496.1| Homo sapiens protein tyrosine phosphatase, receptor type, S, mRNA (cDNA clone IMAGE:5272670), complete cds Length = 907 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggt 87 |||||||||||||||||||| Sbjct: 447 aacaagaagggcaagaaggt 466
>emb|CR938364.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA2YB17AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 852 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtct 114 |||||| ||||||||||||||||| Sbjct: 556 caaggcacccaagatccagcgtct 579
>emb|CR938363.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 3-prime end of clone KW0AAA2YB17BBM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 805 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 caaggctcccaagatccagcgtct 114 |||||| ||||||||||||||||| Sbjct: 644 caaggcacccaagatccagcgtct 621
>emb|AL646091.4| Mouse DNA sequence from clone RP23-101K9 on chromosome 11, complete sequence Length = 133477 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 cttgtgtttgtacttgatgc 473 |||||||||||||||||||| Sbjct: 12216 cttgtgtttgtacttgatgc 12235
>gb|AC126605.4| Homo sapiens chromosome 15, clone RP11-606M5, complete sequence Length = 169125 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 tcctgctgcctctgcttaag 320 |||||||||||||||||||| Sbjct: 61546 tcctgctgcctctgcttaag 61527
>gb|AC110291.6| Homo sapiens chromosome 15, clone RP11-379H8, complete sequence Length = 186812 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tcctgctgcctctgcttaag 320 |||||||||||||||||||| Sbjct: 100295 tcctgctgcctctgcttaag 100314
>dbj|AB226198.1| Aspergillus oryzae cDNA, contig sequence: AoEST3057 Length = 1185 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtct 114 |||||| ||||||||||||||||| Sbjct: 636 caaggcccccaagatccagcgtct 659
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtct 114 |||||| ||||||||||||||||| Sbjct: 3098244 caaggcccccaagatccagcgtct 3098267
>gb|AF154067.1|AF154067 Aedes aegypti ribosomal protein S6 mRNA, complete cds Length = 1041 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtct 114 |||||| ||||||||||||||||| Sbjct: 516 caaggcacccaagatccagcgtct 539
>gb|AC008413.7| Homo sapiens chromosome 5 clone CTC-281M20, complete sequence Length = 143200 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 ggctcctgctgcctctgctt 317 |||||||||||||||||||| Sbjct: 127914 ggctcctgctgcctctgctt 127895
>gb|AC010724.6|AC010724 Homo sapiens BAC clone RP11-152F13 from 15, complete sequence Length = 157200 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 tcctgctgcctctgcttaag 320 |||||||||||||||||||| Sbjct: 3144 tcctgctgcctctgcttaag 3125
>gb|AC115949.13| Mus musculus chromosome 3, clone RP24-568B16, complete sequence Length = 177771 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tcccttgaccctccagagga 140 |||||||||||||||||||| Sbjct: 7923 tcccttgaccctccagagga 7942
>gb|AC113346.2| Homo sapiens chromosome 5 clone CTD-2532K18, complete sequence Length = 175075 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ggctcctgctgcctctgctt 317 |||||||||||||||||||| Sbjct: 144126 ggctcctgctgcctctgctt 144145
>dbj|BS000119.1| Pan troglodytes chromosome 22 clone:RP43-001G01, map 22, complete sequences Length = 101525 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 agaagggcaagaaggtgagcaagg 95 |||||||||||| ||||||||||| Sbjct: 67306 agaagggcaagagggtgagcaagg 67283
>dbj|BS000088.1| Pan troglodytes chromosome 22 clone:RP43-078B15, map 22, complete sequences Length = 198333 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 508 atgagtatgttagagttctatgtt 531 |||||||||||| ||||||||||| Sbjct: 156742 atgagtatgttaaagttctatgtt 156719
>dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synthetase, complete cds Length = 250000 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 agaagggcaagaaggtgagcaagg 95 |||||||||||| ||||||||||| Sbjct: 8990 agaagggcaagagggtgagcaagg 9013
>gb|BC104812.1| Homo sapiens protein tyrosine phosphatase, receptor type, S, transcript variant 3, mRNA (cDNA clone MGC:132472 IMAGE:8143815), complete cds Length = 4665 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggt 87 |||||||||||||||||||| Sbjct: 273 aacaagaagggcaagaaggt 292
>emb|BX784025.12| Zebrafish DNA sequence from clone DKEY-72L14 in linkage group 8, complete sequence Length = 257681 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 atttaccatgaacatggtga 494 |||||||||||||||||||| Sbjct: 30344 atttaccatgaacatggtga 30325
>gb|AY924261.1| Aedes aegypti ribosomal protein S6 gene, partial cds Length = 1476 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtct 114 |||||| ||||||||||||||||| Sbjct: 1064 caaggcacccaagatccagcgtct 1087
>ref|NM_130853.1| Homo sapiens protein tyrosine phosphatase, receptor type, S (PTPRS), transcript variant 3, mRNA Length = 5159 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggt 87 |||||||||||||||||||| Sbjct: 447 aacaagaagggcaagaaggt 466
>ref|NM_130854.1| Homo sapiens protein tyrosine phosphatase, receptor type, S (PTPRS), transcript variant 2, mRNA Length = 6386 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggt 87 |||||||||||||||||||| Sbjct: 447 aacaagaagggcaagaaggt 466
>ref|NM_130855.1| Homo sapiens protein tyrosine phosphatase, receptor type, S (PTPRS), transcript variant 4, mRNA Length = 5171 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggt 87 |||||||||||||||||||| Sbjct: 447 aacaagaagggcaagaaggt 466
>ref|NM_002850.2| Homo sapiens protein tyrosine phosphatase, receptor type, S (PTPRS), transcript variant 1, mRNA Length = 6500 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggt 87 |||||||||||||||||||| Sbjct: 447 aacaagaagggcaagaaggt 466
>gb|AE003583.3| Drosophila melanogaster chromosome 2L, section 8 of 83 of the complete sequence Length = 303641 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 agaagaggatcgccaagaag 184 |||||||||||||||||||| Sbjct: 202367 agaagaggatcgccaagaag 202386
>gb|U41725.1|HSU41725 Human protein tyrosine phosphatase PTPsigma-(brain) (PTPsigma) mRNA, complete cds Length = 4773 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggt 87 |||||||||||||||||||| Sbjct: 221 aacaagaagggcaagaaggt 240
>dbj|AP001727.1| Homo sapiens genomic DNA, chromosome 21q, section 71/105 Length = 340000 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 agaagggcaagaaggtgagcaagg 95 |||||||||||| ||||||||||| Sbjct: 204924 agaagggcaagagggtgagcaagg 204901
>dbj|AP001688.1| Homo sapiens genomic DNA, chromosome 21q, section 32/105 Length = 340000 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 508 atgagtatgttagagttctatgtt 531 |||||||||||| ||||||||||| Sbjct: 100899 atgagtatgttaaagttctatgtt 100876
>dbj|D37942.1|WHTPH2B6A Triticum aestivum mRNA for protein H2B-6, complete cds Length = 564 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 154 cgccgacaagaagaagaggatcgccaagaaga 185 ||||||||||||||||| || |||||||||| Sbjct: 105 cgccgacaagaagaagaagaaggccaagaaga 136
>gb|AC005790.1|AC005790 Homo sapiens chromosome 19, cosmid R34169, complete sequence Length = 39239 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 aacaagaagggcaagaaggt 87 |||||||||||||||||||| Sbjct: 5522 aacaagaagggcaagaaggt 5503
>gb|U40317.1|HSU40317 Human protein tyrosine phosphatase PTPsigma (PTPsigma) mRNA, complete cds Length = 6000 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggt 87 |||||||||||||||||||| Sbjct: 221 aacaagaagggcaagaaggt 240
>gb|U35234.1|HSU35234 Human protein tyrosine phosphatase sigma mRNA, complete cds Length = 6363 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggt 87 |||||||||||||||||||| Sbjct: 307 aacaagaagggcaagaaggt 326
>gb|AC130722.3| Mus musculus BAC clone RP24-358L24 from 3, complete sequence Length = 167780 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 aagttttgttactggagtag 449 |||||||||||||||||||| Sbjct: 38307 aagttttgttactggagtag 38326
>gb|AC138025.4| Mus musculus BAC clone RP24-430F5 from 8, complete sequence Length = 165737 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 gtgagagcatggccaagagg 271 |||||||||||||||||||| Sbjct: 14212 gtgagagcatggccaagagg 14193
>gb|AC154369.1| Mus musculus BAC clone RP24-572H8 from 17, complete sequence Length = 165594 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 270 ggaggtcaaagctgtctgctgctacaaa 297 ||||| ||| |||||||||||||||||| Sbjct: 77472 ggagggcaatgctgtctgctgctacaaa 77499
>gb|AC004369.1|AC004369 Drosophila melanogaster DNA sequence (P1 DS07066 (D70)), complete sequence Length = 77798 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 agaagaggatcgccaagaag 184 |||||||||||||||||||| Sbjct: 64191 agaagaggatcgccaagaag 64172
>dbj|AB209333.1| Homo sapiens mRNA for protein tyrosine phosphatase, receptor type, sigma isoform 3 precursor variant protein Length = 5443 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aacaagaagggcaagaaggt 87 |||||||||||||||||||| Sbjct: 433 aacaagaagggcaagaaggt 452
>emb|AJ438987.1|PLI438987 Paracentrotus lividus mRNA for S6 ribosomal protein (rps6 gene) Length = 983 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 caaggctcccaagatccagcgtct 114 |||||| ||||||||||||||||| Sbjct: 541 caaggcccccaagatccagcgtct 564
>dbj|AP000961.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B811H6, LL56-APP region, complete sequence Length = 165860 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 508 atgagtatgttagagttctatgtt 531 |||||||||||| ||||||||||| Sbjct: 34532 atgagtatgttaaagttctatgtt 34509
>dbj|AP000704.2| Homo sapiens genomic DNA, chromosome 21q22.2, BAC clone:KB318C2, CBR1-HLCS region Length = 122672 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 agaagggcaagaaggtgagcaagg 95 |||||||||||| ||||||||||| Sbjct: 42119 agaagggcaagagggtgagcaagg 42096
>dbj|AP000149.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone D47-S479, segment 1/16, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 agaagggcaagaaggtgagcaagg 95 |||||||||||| ||||||||||| Sbjct: 35392 agaagggcaagagggtgagcaagg 35369
>dbj|AP000008.1| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 1/13 Length = 100000 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 agaagggcaagaaggtgagcaagg 95 |||||||||||| ||||||||||| Sbjct: 35392 agaagggcaagagggtgagcaagg 35369
>dbj|AP001435.2| Homo sapiens genomic DNA, chromosome 21q22.2, clone:T486, LB7T-ERG region, complete sequence Length = 83059 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 agaagggcaagaaggtgagcaagg 95 |||||||||||| ||||||||||| Sbjct: 2584 agaagggcaagagggtgagcaagg 2561 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,736,550 Number of Sequences: 3902068 Number of extensions: 4736550 Number of successful extensions: 103279 Number of sequences better than 10.0: 131 Number of HSP's better than 10.0 without gapping: 130 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 102937 Number of HSP's gapped (non-prelim): 331 length of query: 533 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 510 effective length of database: 17,143,297,704 effective search space: 8743081829040 effective search space used: 8743081829040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
