ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags31m21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550361.1| Oryza sativa (japonica cultivar-group), mRNA 468 e-129
2dbj|AK058497.1| Oryza sativa (japonica cultivar-group) cDNA clon... 468 e-129
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 252 9e-64
4dbj|AP002536.2| Oryza sativa (japonica cultivar-group) genomic D... 252 9e-64
5dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic D... 252 9e-64
6ref|XM_471524.1| Oryza sativa (japonica cultivar-group), predic... 44 0.43
7emb|AL139109.14| Human DNA sequence from clone RP11-291O7 on chr... 44 0.43
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.43
9dbj|AK106614.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.43
10emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromosome 4,... 44 0.43
11ref|XM_478765.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
12gb|BT018911.1| Zea mays clone EL01T0403D10.d mRNA sequence 42 1.7
13emb|AL929108.5| Zebrafish DNA sequence from clone CH211-239J9 in... 42 1.7
14dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
15dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
16gb|AY104365.1| Zea mays PCO135860 mRNA sequence 42 1.7
17dbj|AB057536.1| Rana catesbeiana mRNA for natriuretic-peptide re... 42 1.7
18ref|NM_123609.3| Arabidopsis thaliana ATP binding / kinase/ prot... 40 6.7
19gb|DQ013804.1| Phyllostachys praecox RLK1 mRNA, partial cds 40 6.7
20ref|XM_476518.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.7
21gb|BT011003.1| Arabidopsis thaliana At5g42440 gene, complete cds 40 6.7
22emb|AL353783.14| Human DNA sequence from clone RP11-271O3 on chr... 40 6.7
23gb|AC103739.4| Homo sapiens chromosome 15, clone CTD-3065B20, co... 40 6.7
24gb|AY691322.1| Ochlerotatus atropalpus vitellogenin C (Vg-C) gen... 40 6.7
25emb|CR545467.4| Zebrafish DNA sequence from clone CH211-196P10 i... 40 6.7
26gb|AC162943.2| Mus musculus BAC clone RP23-76K9 from chromosome ... 40 6.7
27gb|AC109439.3| Homo sapiens chromosome 5 clone CTB-1I21, complet... 40 6.7
28gb|AC026616.10| Homo sapiens, clone RP11-758M4, complete sequence 40 6.7
29gb|AC022821.9| Homo sapiens chromosome 8, clone RP11-51M18, comp... 40 6.7
30ref|XM_678571.1| PREDICTED: Danio rerio similar to natriuretic p... 40 6.7
31gb|AC016879.6| Homo sapiens chromosome 8, clone RP11-97P19, comp... 40 6.7
32gb|AC017087.5|AC017087 Homo sapiens BAC clone RP11-495H13 from 4... 40 6.7
33dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
34emb|BX824799.1|CNS0A6RP Arabidopsis thaliana Full-length cDNA Co... 40 6.7
35emb|BX832647.1|CNS0A0Z4 Arabidopsis thaliana Full-length cDNA Co... 40 6.7
36gb|AC068539.8| Homo sapiens BAC clone RP11-145M22 from 2, comple... 40 6.7
37gb|AF238474.1|AF238474 Oryza sativa receptor-like kinase (RLG16)... 40 6.7
38gb|AF237568.1|AF237568 Oryza sativa receptor-like protein kinase... 40 6.7
39dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
40dbj|AP002867.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
41dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
42dbj|AP006172.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
43dbj|AB016888.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.7
44dbj|AK120121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.7
45gb|AC002448.1|AC002448 Homo sapiens PAC clone RP1-68N8 from 5q31... 40 6.7
46gb|AC154794.2| Mus musculus BAC clone RP24-485J1 from 16, comple... 40 6.7
47dbj|AK067638.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.7
48dbj|AK066399.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.7
49emb|CR848841.19| Zebrafish DNA sequence from clone DKEY-202I12 i... 40 6.7
50gb|AY105609.1| Zea mays PCO130861 mRNA sequence 40 6.7
51gb|AF164021.1|AF164021 Oryza sativa clone GRLG4 receptor kinase ... 40 6.7
52gb|AF100764.1|AF100764 Oryza sativa OS8LRK pseudogene sequence 40 6.7
53dbj|AP004301.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
54emb|CT025753.11| Mouse DNA sequence from clone RP24-340F12 on ch... 40 6.7
55gb|AF044489.1|AF044489 Oryza sativa receptor-like protein kinase... 40 6.7 
>ref|XM_550361.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1651

 Score =  468 bits (236), Expect = e-129
 Identities = 401/456 (87%)
 Strand = Plus / Plus

                                                                       
Query: 32  tgggaagagtaaggcacaaaaacctcctgagtttgcgtggatattgtgctgatggacctg 91
           |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 469 tgggaagagtgaggcacaaaaacctcttgagtttccgtggatattgtgctgatggacctg 528

                                                                       
Query: 92  agcgcattctggtgtatgactatatgccaaactcaagtctttttgcacatctccatggaa 151
           | ||| |||||||||||||||  |||||||| |||||||||| ||||||||| || ||||
Sbjct: 529 aacgcgttctggtgtatgacttcatgccaaattcaagtctttatgcacatctgcacggaa 588

                                                                       
Query: 152 cacattcttcggagtgccttcttgactggcggcggagaacatttattgccattggtgctg 211
           |||||||| | ||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 589 cacattctacagagtgccttcttgactggcggaggagaacatttattgcaattggtgctg 648

                                                                       
Query: 212 ctcgggctctcgcgtatcttcaccaccacgcgacatccccaataatccatggaagcatca 271
           |||| ||||| |||||||||||||||||||| ||| |||  ||||||||||| ||| |||
Sbjct: 649 ctcgagctctagcgtatcttcaccaccacgcaacaccccagataatccatgggagcgtca 708

                                                                       
Query: 272 aatcgaccaatgtgctactggattcggatttccaggcacatgttggggactttggtctta 331
           |  | || ||||||||||| |||||  |||||||||||||| |||| ||||||||||| |
Sbjct: 709 aggctactaatgtgctactcgattcaaatttccaggcacatcttggtgactttggtctga 768

                                                                       
Query: 332 tgaagctcatctcagatgaaatagatcatgacaagattatcggtgaaaaccaacgaggct 391
           | | | ||||| ||||||   | |||||||| ||||| ||| ||||||||||||| ||||
Sbjct: 769 taaggttcatcccagatggggtggatcatgataagataatcagtgaaaaccaacgtggct 828

                                                                       
Query: 392 accatgctcctgagtacgtcatgtttggcaagcctacaacaggttgtgatgtctacagct 451
           | | ||||||||||||| | ||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 829 atcttgctcctgagtacattatgtttggcaaacctacaataggttgtgatgtctacagct 888

                                               
Query: 452 ttggcataatacttctggagcttactagtgggagaa 487
           |||||||||||||  |||||||  ||||||||||||
Sbjct: 889 ttggcataatactgttggagctatctagtgggagaa 924
to top
>dbj|AK058497.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-E12, full
           insert sequence
          Length = 1651

 Score =  468 bits (236), Expect = e-129
 Identities = 401/456 (87%)
 Strand = Plus / Plus

                                                                       
Query: 32  tgggaagagtaaggcacaaaaacctcctgagtttgcgtggatattgtgctgatggacctg 91
           |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 469 tgggaagagtgaggcacaaaaacctcttgagtttccgtggatattgtgctgatggacctg 528

                                                                       
Query: 92  agcgcattctggtgtatgactatatgccaaactcaagtctttttgcacatctccatggaa 151
           | ||| |||||||||||||||  |||||||| |||||||||| ||||||||| || ||||
Sbjct: 529 aacgcgttctggtgtatgacttcatgccaaattcaagtctttatgcacatctgcacggaa 588

                                                                       
Query: 152 cacattcttcggagtgccttcttgactggcggcggagaacatttattgccattggtgctg 211
           |||||||| | ||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 589 cacattctacagagtgccttcttgactggcggaggagaacatttattgcaattggtgctg 648

                                                                       
Query: 212 ctcgggctctcgcgtatcttcaccaccacgcgacatccccaataatccatggaagcatca 271
           |||| ||||| |||||||||||||||||||| ||| |||  ||||||||||| ||| |||
Sbjct: 649 ctcgagctctagcgtatcttcaccaccacgcaacaccccagataatccatgggagcgtca 708

                                                                       
Query: 272 aatcgaccaatgtgctactggattcggatttccaggcacatgttggggactttggtctta 331
           |  | || ||||||||||| |||||  |||||||||||||| |||| ||||||||||| |
Sbjct: 709 aggctactaatgtgctactcgattcaaatttccaggcacatcttggtgactttggtctga 768

                                                                       
Query: 332 tgaagctcatctcagatgaaatagatcatgacaagattatcggtgaaaaccaacgaggct 391
           | | | ||||| ||||||   | |||||||| ||||| ||| ||||||||||||| ||||
Sbjct: 769 taaggttcatcccagatggggtggatcatgataagataatcagtgaaaaccaacgtggct 828

                                                                       
Query: 392 accatgctcctgagtacgtcatgtttggcaagcctacaacaggttgtgatgtctacagct 451
           | | ||||||||||||| | ||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 829 atcttgctcctgagtacattatgtttggcaaacctacaataggttgtgatgtctacagct 888

                                               
Query: 452 ttggcataatacttctggagcttactagtgggagaa 487
           |||||||||||||  |||||||  ||||||||||||
Sbjct: 889 ttggcataatactgttggagctatctagtgggagaa 924
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  252 bits (127), Expect = 9e-64
 Identities = 178/195 (91%)
 Strand = Plus / Plus

                                                                           
Query: 32      tgggaagagtaaggcacaaaaacctcctgagtttgcgtggatattgtgctgatggacctg 91
               |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 3361211 tgggaagagtgaggcacaaaaacctcttgagtttccgtggatattgtgctgatggacctg 3361270

                                                                           
Query: 92      agcgcattctggtgtatgactatatgccaaactcaagtctttttgcacatctccatggaa 151
               | ||| |||||||||||||||  |||||||| |||||||||| ||||||||| || ||||
Sbjct: 3361271 aacgcgttctggtgtatgacttcatgccaaattcaagtctttatgcacatctgcacggaa 3361330

                                                                           
Query: 152     cacattcttcggagtgccttcttgactggcggcggagaacatttattgccattggtgctg 211
               |||||||| | ||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 3361331 cacattctacagagtgccttcttgactggcggaggagaacatttattgcaattggtgctg 3361390

                              
Query: 212     ctcgggctctcgcgt 226
               |||| ||||| ||||
Sbjct: 3361391 ctcgagctctagcgt 3361405



 Score =  220 bits (111), Expect = 3e-54
 Identities = 225/263 (85%)
 Strand = Plus / Plus

                                                                           
Query: 225     gtatcttcaccaccacgcgacatccccaataatccatggaagcatcaaatcgaccaatgt 284
               |||||||||||||||||| ||| |||  ||||||||||| ||| ||||  | || |||||
Sbjct: 3361526 gtatcttcaccaccacgcaacaccccagataatccatgggagcgtcaaggctactaatgt 3361585

                                                                           
Query: 285     gctactggattcggatttccaggcacatgttggggactttggtcttatgaagctcatctc 344
               |||||| |||||  |||||||||||||| |||| ||||||||||| || | | ||||| |
Sbjct: 3361586 gctactcgattcaaatttccaggcacatcttggtgactttggtctgataaggttcatccc 3361645

                                                                           
Query: 345     agatgaaatagatcatgacaagattatcggtgaaaaccaacgaggctaccatgctcctga 404
               |||||   | |||||||| ||||| ||| ||||||||||||| ||||| | |||||||||
Sbjct: 3361646 agatggggtggatcatgataagataatcagtgaaaaccaacgtggctatcttgctcctga 3361705

                                                                           
Query: 405     gtacgtcatgtttggcaagcctacaacaggttgtgatgtctacagctttggcataatact 464
               |||| | ||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3361706 gtacattatgtttggcaaacctacaataggttgtgatgtctacagctttggcataatact 3361765

                                      
Query: 465     tctggagcttactagtgggagaa 487
                 |||||||  ||||||||||||
Sbjct: 3361766 gttggagctatctagtgggagaa 3361788
to top
>dbj|AP002536.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0015I14
          Length = 150650

 Score =  252 bits (127), Expect = 9e-64
 Identities = 178/195 (91%)
 Strand = Plus / Plus

                                                                          
Query: 32     tgggaagagtaaggcacaaaaacctcctgagtttgcgtggatattgtgctgatggacctg 91
              |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 148574 tgggaagagtgaggcacaaaaacctcttgagtttccgtggatattgtgctgatggacctg 148633

                                                                          
Query: 92     agcgcattctggtgtatgactatatgccaaactcaagtctttttgcacatctccatggaa 151
              | ||| |||||||||||||||  |||||||| |||||||||| ||||||||| || ||||
Sbjct: 148634 aacgcgttctggtgtatgacttcatgccaaattcaagtctttatgcacatctgcacggaa 148693

                                                                          
Query: 152    cacattcttcggagtgccttcttgactggcggcggagaacatttattgccattggtgctg 211
              |||||||| | ||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 148694 cacattctacagagtgccttcttgactggcggaggagaacatttattgcaattggtgctg 148753

                             
Query: 212    ctcgggctctcgcgt 226
              |||| ||||| ||||
Sbjct: 148754 ctcgagctctagcgt 148768



 Score =  220 bits (111), Expect = 3e-54
 Identities = 225/263 (85%)
 Strand = Plus / Plus

                                                                          
Query: 225    gtatcttcaccaccacgcgacatccccaataatccatggaagcatcaaatcgaccaatgt 284
              |||||||||||||||||| ||| |||  ||||||||||| ||| ||||  | || |||||
Sbjct: 148889 gtatcttcaccaccacgcaacaccccagataatccatgggagcgtcaaggctactaatgt 148948

                                                                          
Query: 285    gctactggattcggatttccaggcacatgttggggactttggtcttatgaagctcatctc 344
              |||||| |||||  |||||||||||||| |||| ||||||||||| || | | ||||| |
Sbjct: 148949 gctactcgattcaaatttccaggcacatcttggtgactttggtctgataaggttcatccc 149008

                                                                          
Query: 345    agatgaaatagatcatgacaagattatcggtgaaaaccaacgaggctaccatgctcctga 404
              |||||   | |||||||| ||||| ||| ||||||||||||| ||||| | |||||||||
Sbjct: 149009 agatggggtggatcatgataagataatcagtgaaaaccaacgtggctatcttgctcctga 149068

                                                                          
Query: 405    gtacgtcatgtttggcaagcctacaacaggttgtgatgtctacagctttggcataatact 464
              |||| | ||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 149069 gtacattatgtttggcaaacctacaataggttgtgatgtctacagctttggcataatact 149128

                                     
Query: 465    tctggagcttactagtgggagaa 487
                |||||||  ||||||||||||
Sbjct: 149129 gttggagctatctagtgggagaa 149151
to top
>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone
             P0680A03
          Length = 156054

 Score =  252 bits (127), Expect = 9e-64
 Identities = 178/195 (91%)
 Strand = Plus / Plus

                                                                         
Query: 32    tgggaagagtaaggcacaaaaacctcctgagtttgcgtggatattgtgctgatggacctg 91
             |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 52765 tgggaagagtgaggcacaaaaacctcttgagtttccgtggatattgtgctgatggacctg 52824

                                                                         
Query: 92    agcgcattctggtgtatgactatatgccaaactcaagtctttttgcacatctccatggaa 151
             | ||| |||||||||||||||  |||||||| |||||||||| ||||||||| || ||||
Sbjct: 52825 aacgcgttctggtgtatgacttcatgccaaattcaagtctttatgcacatctgcacggaa 52884

                                                                         
Query: 152   cacattcttcggagtgccttcttgactggcggcggagaacatttattgccattggtgctg 211
             |||||||| | ||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 52885 cacattctacagagtgccttcttgactggcggaggagaacatttattgcaattggtgctg 52944

                            
Query: 212   ctcgggctctcgcgt 226
             |||| ||||| ||||
Sbjct: 52945 ctcgagctctagcgt 52959



 Score =  220 bits (111), Expect = 3e-54
 Identities = 225/263 (85%)
 Strand = Plus / Plus

                                                                         
Query: 225   gtatcttcaccaccacgcgacatccccaataatccatggaagcatcaaatcgaccaatgt 284
             |||||||||||||||||| ||| |||  ||||||||||| ||| ||||  | || |||||
Sbjct: 53080 gtatcttcaccaccacgcaacaccccagataatccatgggagcgtcaaggctactaatgt 53139

                                                                         
Query: 285   gctactggattcggatttccaggcacatgttggggactttggtcttatgaagctcatctc 344
             |||||| |||||  |||||||||||||| |||| ||||||||||| || | | ||||| |
Sbjct: 53140 gctactcgattcaaatttccaggcacatcttggtgactttggtctgataaggttcatccc 53199

                                                                         
Query: 345   agatgaaatagatcatgacaagattatcggtgaaaaccaacgaggctaccatgctcctga 404
             |||||   | |||||||| ||||| ||| ||||||||||||| ||||| | |||||||||
Sbjct: 53200 agatggggtggatcatgataagataatcagtgaaaaccaacgtggctatcttgctcctga 53259

                                                                         
Query: 405   gtacgtcatgtttggcaagcctacaacaggttgtgatgtctacagctttggcataatact 464
             |||| | ||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 53260 gtacattatgtttggcaaacctacaataggttgtgatgtctacagctttggcataatact 53319

                                    
Query: 465   tctggagcttactagtgggagaa 487
               |||||||  ||||||||||||
Sbjct: 53320 gttggagctatctagtgggagaa 53342
to top
>ref|XM_471524.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2322

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 437  gtgatgtctacagctttggcat 458
            ||||||||||||||||||||||
Sbjct: 1898 gtgatgtctacagctttggcat 1919
to top
>emb|AL139109.14| Human DNA sequence from clone RP11-291O7 on chromosome X, complete
              sequence
          Length = 197536

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 281    atgtgctactggattcggatttccag 306
              ||||||||||||||||||||| ||||
Sbjct: 132341 atgtgctactggattcggattgccag 132316
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 437      gtgatgtctacagctttggcat 458
                ||||||||||||||||||||||
Sbjct: 11622563 gtgatgtctacagctttggcat 11622542
to top
>dbj|AK106614.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-H08, full
            insert sequence
          Length = 2651

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 437  gtgatgtctacagctttggcat 458
            ||||||||||||||||||||||
Sbjct: 1903 gtgatgtctacagctttggcat 1924
to top
>emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0058J09,
              complete sequence
          Length = 164911

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 437    gtgatgtctacagctttggcat 458
              ||||||||||||||||||||||
Sbjct: 105573 gtgatgtctacagctttggcat 105552
to top
>ref|XM_478765.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2070

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 438  tgatgtctacagctttggcat 458
            |||||||||||||||||||||
Sbjct: 1593 tgatgtctacagctttggcat 1613
to top
>gb|BT018911.1| Zea mays clone EL01T0403D10.d mRNA sequence
          Length = 1980

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 438  tgatgtctacagctttggcat 458
            |||||||||||||||||||||
Sbjct: 1276 tgatgtctacagctttggcat 1296
to top
>emb|AL929108.5| Zebrafish DNA sequence from clone CH211-239J9 in linkage group 6
             Contains the 3' part of a novel gene similar to human and
             mouse SPAG1 (sperm associated antigen 1), a novel gene
             similar to human and mouse COX6C (cytochrome c oxidase,
             subunit VIc), a novel gene, a novel gene similar to mouse
             and human MBC2 (membrane bound C2 domain containing
             protein), a novel gene similar to vertebrate ITGB4BP
             (integrin beta 4 binding protein), the 3' part of novel
             gene similar to vertebrate MMP24 (membrane-inserted matrix
             metalloproteinase 24) and two predicted CpG islands,
             complete sequence
          Length = 161277

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 191   catttattgccattggtgctg 211
             |||||||||||||||||||||
Sbjct: 96663 catttattgccattggtgctg 96683
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 438      tgatgtctacagctttggcat 458
                |||||||||||||||||||||
Sbjct: 22869643 tgatgtctacagctttggcat 22869623



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 103     gtgtatgactatatgccaaa 122
               ||||||||||||||||||||
Sbjct: 1646869 gtgtatgactatatgccaaa 1646850
to top
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1019_E02
          Length = 121607

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 438   tgatgtctacagctttggcat 458
             |||||||||||||||||||||
Sbjct: 62910 tgatgtctacagctttggcat 62890
to top
>gb|AY104365.1| Zea mays PCO135860 mRNA sequence
          Length = 1277

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 438 tgatgtctacagctttggcat 458
           |||||||||||||||||||||
Sbjct: 605 tgatgtctacagctttggcat 625
to top
>dbj|AB057536.1| Rana catesbeiana mRNA for natriuretic-peptide receptor A, complete
            cds
          Length = 4347

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 443  tctacagctttggcataatacttctggag 471
            |||||||||||||||| ||||||| ||||
Sbjct: 2535 tctacagctttggcattatacttcaggag 2563
to top
>ref|NM_123609.3| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein
           serine/threonine kinase/ protein-tyrosine kinase
           AT5G42440 mRNA, complete cds
          Length = 1271

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 268 atcaaatcgaccaatgtgctactggattcggatttc 303
           ||||||||||  ||||||||  ||||||||||||||
Sbjct: 680 atcaaatcgagtaatgtgctgttggattcggatttc 715
to top
>gb|DQ013804.1| Phyllostachys praecox RLK1 mRNA, partial cds
          Length = 2776

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 437  gtgatgtctacagctttggc 456
            ||||||||||||||||||||
Sbjct: 1973 gtgatgtctacagctttggc 1992
to top
>ref|XM_476518.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2283

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  gtgtatgactatatgccaaa 122
            ||||||||||||||||||||
Sbjct: 1528 gtgtatgactatatgccaaa 1547
to top
>gb|BT011003.1| Arabidopsis thaliana At5g42440 gene, complete cds
          Length = 1236

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 268 atcaaatcgaccaatgtgctactggattcggatttc 303
           ||||||||||  ||||||||  ||||||||||||||
Sbjct: 669 atcaaatcgagtaatgtgctgttggattcggatttc 704
to top
>emb|AL353783.14| Human DNA sequence from clone RP11-271O3 on chromosome 9, complete
             sequence
          Length = 136688

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   tcagatgaaatagatcatga 362
             ||||||||||||||||||||
Sbjct: 38909 tcagatgaaatagatcatga 38928
to top
>gb|AC103739.4| Homo sapiens chromosome 15, clone CTD-3065B20, complete sequence
          Length = 161386

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   tccatggaacacattcttcg 162
             ||||||||||||||||||||
Sbjct: 34929 tccatggaacacattcttcg 34948
to top
>gb|AY691322.1| Ochlerotatus atropalpus vitellogenin C (Vg-C) gene, partial cds
          Length = 6248

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  ttgactggcggcggagaaca 192
            ||||||||||||||||||||
Sbjct: 4874 ttgactggcggcggagaaca 4855
to top
>emb|CR545467.4| Zebrafish DNA sequence from clone CH211-196P10 in linkage group 16,
            complete sequence
          Length = 161708

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 439  gatgtctacagctttggcataatacttc 466
            ||||||||||| |||||||| |||||||
Sbjct: 3553 gatgtctacagttttggcatcatacttc 3580
to top
>gb|AC162943.2| Mus musculus BAC clone RP23-76K9 from chromosome 16, complete sequence
          Length = 184984

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   tgccaaactcaagtcttttt 135
             ||||||||||||||||||||
Sbjct: 61463 tgccaaactcaagtcttttt 61482
to top
>gb|AC109439.3| Homo sapiens chromosome 5 clone CTB-1I21, complete sequence
          Length = 153667

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   caatgtgctactggattcgg 298
             ||||||||||||||||||||
Sbjct: 13295 caatgtgctactggattcgg 13314
to top
>gb|AC026616.10| Homo sapiens, clone RP11-758M4, complete sequence
          Length = 158422

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    atgccaaactcaagtctttt 134
              ||||||||||||||||||||
Sbjct: 107197 atgccaaactcaagtctttt 107216
to top
>gb|AC022821.9| Homo sapiens chromosome 8, clone RP11-51M18, complete sequence
          Length = 171721

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   ttgtgatgtctacagctttg 454
             ||||||||||||||||||||
Sbjct: 89026 ttgtgatgtctacagctttg 89045
to top
>ref|XM_678571.1| PREDICTED: Danio rerio similar to natriuretic peptide receptor-A
           (LOC555911), mRNA
          Length = 1878

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 439 gatgtctacagctttggcataatacttc 466
           ||||||||||| |||||||| |||||||
Sbjct: 847 gatgtctacagttttggcatcatacttc 874
to top
>gb|AC016879.6| Homo sapiens chromosome 8, clone RP11-97P19, complete sequence
          Length = 182556

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 ttgtgatgtctacagctttg 454
           ||||||||||||||||||||
Sbjct: 449 ttgtgatgtctacagctttg 430
to top
>gb|AC017087.5|AC017087 Homo sapiens BAC clone RP11-495H13 from 4, complete sequence
          Length = 171745

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   tttccaggcacatgttgggg 319
             ||||||||||||||||||||
Sbjct: 27221 tttccaggcacatgttgggg 27202
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 439    gatgtctacagctttggcat 458
              ||||||||||||||||||||
Sbjct: 867731 gatgtctacagctttggcat 867750



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 439    gatgtctacagctttggcat 458
              ||||||||||||||||||||
Sbjct: 772210 gatgtctacagctttggcat 772229
to top
>emb|BX824799.1|CNS0A6RP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH73ZB01 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1030

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 tgtgatgtctacagctttggcata 459
           ||||||||| ||||||||||||||
Sbjct: 601 tgtgatgtccacagctttggcata 624
to top
>emb|BX832647.1|CNS0A0Z4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH86ZF07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1221

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 268 atcaaatcgaccaatgtgctactggattcggatttc 303
           ||||||||||  ||||||||  ||||||||||||||
Sbjct: 680 atcaaatcgagtaatgtgctgttggattcggatttc 715
to top
>gb|AC068539.8| Homo sapiens BAC clone RP11-145M22 from 2, complete sequence
          Length = 80775

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    ccttgggaagagtaaggcac 48
             ||||||||||||||||||||
Sbjct: 46818 ccttgggaagagtaaggcac 46799
to top
>gb|AF238474.1|AF238474 Oryza sativa receptor-like kinase (RLG16) gene, complete cds
          Length = 4500

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 439  gatgtctacagctttggcat 458
            ||||||||||||||||||||
Sbjct: 3311 gatgtctacagctttggcat 3330
to top
>gb|AF237568.1|AF237568 Oryza sativa receptor-like protein kinase (RLG2) gene, complete cds
          Length = 4000

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 439  gatgtctacagctttggcat 458
            ||||||||||||||||||||
Sbjct: 3147 gatgtctacagctttggcat 3166
to top
>dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0698G03
          Length = 147857

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 439  gatgtctacagctttggcat 458
            ||||||||||||||||||||
Sbjct: 3176 gatgtctacagctttggcat 3195
to top
>dbj|AP002867.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0463F06
          Length = 144322

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 439   gatgtctacagctttggcat 458
             ||||||||||||||||||||
Sbjct: 90405 gatgtctacagctttggcat 90424
to top
>dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1212_B09
          Length = 130728

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 439   gatgtctacagctttggcat 458
             ||||||||||||||||||||
Sbjct: 49410 gatgtctacagctttggcat 49429
to top
>dbj|AP006172.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0088O14
          Length = 179483

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    gtgtatgactatatgccaaa 122
              ||||||||||||||||||||
Sbjct: 115524 gtgtatgactatatgccaaa 115505
to top
>dbj|AB016888.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDH9
          Length = 85791

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 268   atcaaatcgaccaatgtgctactggattcggatttc 303
             ||||||||||  ||||||||  ||||||||||||||
Sbjct: 52677 atcaaatcgagtaatgtgctgttggattcggatttc 52642
to top
>dbj|AK120121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025P07, full
            insert sequence
          Length = 3392

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 439  gatgtctacagctttggcat 458
            ||||||||||||||||||||
Sbjct: 2773 gatgtctacagctttggcat 2792
to top
>gb|AC002448.1|AC002448 Homo sapiens PAC clone RP1-68N8 from 5q31, complete sequence
          Length = 122322

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   caatgtgctactggattcgg 298
             ||||||||||||||||||||
Sbjct: 77036 caatgtgctactggattcgg 77017
to top
>gb|AC154794.2| Mus musculus BAC clone RP24-485J1 from 16, complete sequence
          Length = 179257

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    tgccaaactcaagtcttttt 135
              ||||||||||||||||||||
Sbjct: 141093 tgccaaactcaagtcttttt 141112
to top
>dbj|AK067638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109O13, full
            insert sequence
          Length = 2275

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  gtgtatgactatatgccaaa 122
            ||||||||||||||||||||
Sbjct: 1350 gtgtatgactatatgccaaa 1369
to top
>dbj|AK066399.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063L14, full
            insert sequence
          Length = 3210

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  gtgtatgactatatgccaaa 122
            ||||||||||||||||||||
Sbjct: 1350 gtgtatgactatatgccaaa 1369
to top
>emb|CR848841.19| Zebrafish DNA sequence from clone DKEY-202I12 in linkage group 16,
             complete sequence
          Length = 205755

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 439   gatgtctacagctttggcataatacttc 466
             ||||||||||| |||||||| |||||||
Sbjct: 43251 gatgtctacagttttggcatcatacttc 43278
to top
>gb|AY105609.1| Zea mays PCO130861 mRNA sequence
          Length = 773

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 tgtgatgtctacagctttggcata 459
           |||||||||||||| |||||||||
Sbjct: 603 tgtgatgtctacagttttggcata 626
to top
>gb|AF164021.1|AF164021 Oryza sativa clone GRLG4 receptor kinase gene, complete cds
          Length = 5112

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 439  gatgtctacagctttggcat 458
            ||||||||||||||||||||
Sbjct: 4205 gatgtctacagctttggcat 4224
to top
>gb|AF100764.1|AF100764 Oryza sativa OS8LRK pseudogene sequence
          Length = 3590

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 439  gatgtctacagctttggcat 458
            ||||||||||||||||||||
Sbjct: 3147 gatgtctacagctttggcat 3166
to top
>dbj|AP004301.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0483E09
          Length = 69300

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   gtgtatgactatatgccaaa 122
             ||||||||||||||||||||
Sbjct: 56022 gtgtatgactatatgccaaa 56003
to top
>emb|CT025753.11| Mouse DNA sequence from clone RP24-340F12 on chromosome 16, complete
              sequence
          Length = 231697

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    tgccaaactcaagtcttttt 135
              ||||||||||||||||||||
Sbjct: 156941 tgccaaactcaagtcttttt 156922
to top
>gb|AF044489.1|AF044489 Oryza sativa receptor-like protein kinase (drpk1) mRNA, partial cds
          Length = 1569

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 439 gatgtctacagctttggcat 458
           ||||||||||||||||||||
Sbjct: 906 gatgtctacagctttggcat 925


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,760,146
Number of Sequences: 3902068
Number of extensions: 3760146
Number of successful extensions: 63313
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63099
Number of HSP's gapped (non-prelim): 214
length of query: 492
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 470
effective length of database: 17,147,199,772
effective search space: 8059183892840
effective search space used: 8059183892840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top