ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags31m07 |
|---|---|
| Clone Library Name | barley_pub |
>CILA_KLEPN (P45413) Citrate lyase alpha chain (EC 4.1.3.6) (Citrase alpha| chain) (Citrate (pro-3S)-lyase alpha chain) (Citrate CoA-transferase subunit) (EC 2.8.3.10) Length = 508 Score = 31.2 bits (69), Expect = 1.6 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 11/103 (10%) Frame = +3 Query: 12 MLNQVHVVGEGIIGTALVSGKCRWISDDDSFSLVQTCN-----VENLGLFQGYT-WWQHQ 173 MLNQ +V+ G+ A V+ K W++ + + C+ + GL G T + H Sbjct: 7 MLNQQYVMPNGLTPYAGVTAKSPWLASESEKRQRKICDSLETAIRRSGLQNGMTISFHHA 66 Query: 174 FMSGIKTIAVVPIPALGVAQFGSVQKVSENL-----EFLEHVK 287 F G K + +V + L F + S +L +EH+K Sbjct: 67 FRGGDKVVNMV-VAKLAEMGFRDLTLASSSLIDAHWPLIEHIK 108
>HBB_MESBR (P18707) Hemoglobin beta subunit (Hemoglobin beta chain)| (Beta-globin) Length = 146 Score = 31.2 bits (69), Expect = 1.6 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 10/90 (11%) Frame = +3 Query: 216 ALGVAQFGSVQKVSE-NLEFLEHVKGTLCGRESILWDPSTK-------HIHGDALPH--N 365 A+G G + V+ F EH G L +++ +P K H D L H N Sbjct: 22 AVGAEALGRLLVVTPWTQRFFEHF-GDLSSASAVMNNPQVKAHGKKVIHSFADGLKHLDN 80 Query: 366 SQFQLNSLSTKRLMRIKDDPENMKVLENIV 455 + +SLS ++ DPEN K+L N++ Sbjct: 81 LKGAFSSLSELHCDKLHVDPENFKLLGNMI 110
>HBB_MESAU (P02094) Hemoglobin beta subunit (Hemoglobin beta chain)| (Beta-globin) (Hemoglobin beta-major chain) Length = 146 Score = 30.8 bits (68), Expect = 2.1 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 9/71 (12%) Frame = +3 Query: 270 FLEHVKGTLCGRESILWDPSTK-------HIHGDALPH--NSQFQLNSLSTKRLMRIKDD 422 F EH G L +++ +P K H D L H N + +SLS ++ D Sbjct: 41 FFEHF-GDLSSASAVMNNPQVKAHGKKVIHSFADGLKHLDNLKGAFSSLSELHCDKLHVD 99 Query: 423 PENMKVLENIV 455 PEN K+L N++ Sbjct: 100 PENFKLLGNMI 110
>DUSA_YERPE (Q8ZJ14) tRNA-dihydrouridine synthase A (EC 1.-.-.-)| Length = 345 Score = 30.8 bits (68), Expect = 2.1 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = +3 Query: 213 PALGVAQFGSVQKVSENLEFLEHVKGTLCGRES 311 PAL +A G V+ ++E E L+H+ G + GRE+ Sbjct: 213 PALTIAINGGVKTLAEAKEHLKHLDGVMMGREA 245
>HUTH_THEVO (Q978N8) Probable histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 495 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/65 (23%), Positives = 32/65 (49%) Frame = +3 Query: 276 EHVKGTLCGRESILWDPSTKHIHGDALPHNSQFQLNSLSTKRLMRIKDDPENMKVLENIV 455 ++ LC R +L PS+ + + S ST +L+ I+++ E + +E ++ Sbjct: 380 QYTAAALCNRNKVLSYPSSADSIPTSANQEDHVSMGSTSTLKLLEIEENLEYIVAIEFLL 439 Query: 456 GIESL 470 G ++L Sbjct: 440 GAQAL 444
>TO402_ARATH (Q9SX55) Putative mitochondrial import receptor subunit TOM40| homolog 2 (Translocase of outer membrane 40 kDa subunit homolog 2) Length = 310 Score = 30.0 bits (66), Expect = 3.5 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 9/47 (19%) Frame = +3 Query: 159 WWQHQFMSGI---------KTIAVVPIPALGVAQFGSVQKVSENLEF 272 W Q MSG+ KT+A I + GVA V KVSE L F Sbjct: 190 WLGQQLMSGVGYAARYETDKTVASGQIASTGVAVMNYVHKVSEKLSF 236
>TUB4_AGRVI (Q44470) Putative tartrate transporter| Length = 433 Score = 29.6 bits (65), Expect = 4.6 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +3 Query: 72 KCRWISDDDSFSLVQTCNVENLGLFQGYTWWQHQFMSGIKTIAVVPIPALGVAQFGS 242 K +W+S+D+ LV+T N E + H ++G+ I V+ AL + FG+ Sbjct: 203 KAKWLSEDERNWLVKTMNAEQAAKGKA----SHSILAGLADIRVI---ALALVYFGT 252
>PKHD1_HUMAN (Q8TCZ9) Polycystic kidney and hepatic disease 1 precursor| (Fibrocystin) (Polyductin) (Tigmin) Length = 4074 Score = 28.9 bits (63), Expect = 7.8 Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 3/116 (2%) Frame = +3 Query: 132 NLGLFQGYTWWQHQFMSGIKTIAVVPIPALGVAQFGSVQKVSENLEFLEHVKGTLCGRES 311 NL + W +++GIK V I G+V SE L F H++G C Sbjct: 3063 NLVVLMTQPAWSTIWVAGIKVNQVKDINL-----HGNVVAGSERLGF--HIRGHKCSSCE 3115 Query: 312 ILWDPSTKH--IHGDALPHNSQFQLNSLSTKRLMRIKD-DPENMKVLENIVGIESL 470 +LW + H +HG L S N + K+ D M +EN V IE++ Sbjct: 3116 LLWSDNVAHSSLHGLHLYKESGLD-NCTRISGFLAFKNFDYGAMLHVENSVEIENI 3170
>RS14B_STAAW (P66416) 30S ribosomal protein S14-2| Length = 89 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 490 EVLTKLPRDSMPTMFSRTFMFSGSSLIRIRRFVLRELS 377 E L KLPRDS PT +R +G +R+F + ++ Sbjct: 34 EALRKLPRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIA 71
>RS14B_STAAS (Q6G9M2) 30S ribosomal protein S14-2| Length = 89 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 490 EVLTKLPRDSMPTMFSRTFMFSGSSLIRIRRFVLRELS 377 E L KLPRDS PT +R +G +R+F + ++ Sbjct: 34 EALRKLPRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIA 71
>RS14B_STAAR (Q6GH70) 30S ribosomal protein S14-2| Length = 89 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 490 EVLTKLPRDSMPTMFSRTFMFSGSSLIRIRRFVLRELS 377 E L KLPRDS PT +R +G +R+F + ++ Sbjct: 34 ETLRKLPRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIA 71
>RS14B_STAAN (P66415) 30S ribosomal protein S14-2| Length = 89 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 490 EVLTKLPRDSMPTMFSRTFMFSGSSLIRIRRFVLRELS 377 E L KLPRDS PT +R +G +R+F + ++ Sbjct: 34 EALRKLPRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIA 71
>RS14B_STAAM (P66414) 30S ribosomal protein S14-2| Length = 89 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 490 EVLTKLPRDSMPTMFSRTFMFSGSSLIRIRRFVLRELS 377 E L KLPRDS PT +R +G +R+F + ++ Sbjct: 34 EALRKLPRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIA 71
>RS14B_STAAC (Q5HG84) 30S ribosomal protein S14-2| Length = 89 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 490 EVLTKLPRDSMPTMFSRTFMFSGSSLIRIRRFVLRELS 377 E L KLPRDS PT +R +G +R+F + ++ Sbjct: 34 EALRKLPRDSSPTRLTRRCKVTGRPRGVLRKFEMSRIA 71 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,054,473 Number of Sequences: 219361 Number of extensions: 1482820 Number of successful extensions: 3614 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3537 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3613 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
