ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags32b06 |
|---|---|
| Clone Library Name | barley_pub |
>VPS35_MOUSE (Q9EQH3) Vacuolar protein sorting 35 (Vesicle protein sorting 35)| (Maternal-embryonic 3) Length = 796 Score = 170 bits (430), Expect = 3e-42 Identities = 97/202 (48%), Positives = 127/202 (62%), Gaps = 3/202 (1%) Frame = +2 Query: 5 DEEDFKEEQNSVARLIHMLHNDDNDEMLKILCTVQKHILQGGPKRLPFTVPSLVFSALKL 184 D EDF +EQ+ V R IH+L +DD D+ IL T +KH GG +R+ FT+P LVF+A +L Sbjct: 480 DPEDFADEQSLVGRFIHLLRSDDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQL 539 Query: 185 VRRLQGQDGDVTGEEVPATPKKIFQILHQTIEALQCIPCPELSLRLYLQCAEAANDCDLE 364 R + + ++ +KIF HQTI AL EL LRL+LQ A AA + E Sbjct: 540 AFRYK--ENSQMDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFE 597 Query: 365 ---PVAYEFFTQAFILYEEEIADSKAQITALHLIIGTLQRMNIFGVENRDTLTHKTTGYS 535 VAYEF +QAF LYE+EI+DSKAQ+ A+ LIIGT +RM F EN + L + + Sbjct: 598 NHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAA 657 Query: 536 AKLLKKPDQCRAVYACSHLFWT 601 +KLLKKPDQ RAV C+HLFW+ Sbjct: 658 SKLLKKPDQGRAVSTCAHLFWS 679
>VPS35_HUMAN (Q96QK1) Vacuolar protein sorting 35 (Vesicle protein sorting 35)| (hVPS35) (Maternal-embryonic 3) Length = 796 Score = 169 bits (427), Expect = 8e-42 Identities = 96/202 (47%), Positives = 127/202 (62%), Gaps = 3/202 (1%) Frame = +2 Query: 5 DEEDFKEEQNSVARLIHMLHNDDNDEMLKILCTVQKHILQGGPKRLPFTVPSLVFSALKL 184 D EDF +EQ+ V R IH+L ++D D+ IL T +KH GG +R+ FT+P LVF+A +L Sbjct: 480 DPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQL 539 Query: 185 VRRLQGQDGDVTGEEVPATPKKIFQILHQTIEALQCIPCPELSLRLYLQCAEAANDCDLE 364 R + + ++ +KIF HQTI AL EL LRL+LQ A AA + E Sbjct: 540 AFRYK--ENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFE 597 Query: 365 ---PVAYEFFTQAFILYEEEIADSKAQITALHLIIGTLQRMNIFGVENRDTLTHKTTGYS 535 VAYEF +QAF LYE+EI+DSKAQ+ A+ LIIGT +RM F EN + L + + Sbjct: 598 NHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAA 657 Query: 536 AKLLKKPDQCRAVYACSHLFWT 601 +KLLKKPDQ RAV C+HLFW+ Sbjct: 658 SKLLKKPDQGRAVSTCAHLFWS 679
>VPS35_SCHPO (O74552) Vacuolar protein sorting-associated protein vps35| Length = 785 Score = 114 bits (286), Expect = 2e-25 Identities = 71/198 (35%), Positives = 112/198 (56%), Gaps = 3/198 (1%) Frame = +2 Query: 14 DFKEEQNSVARLIHMLHNDDNDEMLKILCTVQKHILQGGPKRLPFTVPSLVFSALKLVRR 193 D ++ +VA ++H L+NDD ++IL +++ ++ G + + + +P +V + L R Sbjct: 460 DSLDDLQNVALMVHYLNNDDPQIQIEILRSLKDTFIKAG-ENVKYLLPVVVNRCIFLARN 518 Query: 194 LQGQDGDVTGEEVPATPKKI---FQILHQTIEALQCIPCPELSLRLYLQCAEAANDCDLE 364 + E+V + + +L++ ++L EL L LYL AE A+ + Sbjct: 519 FRIFKCMDWAEKVRLLWEFVNTCINVLYKNGDSL------ELCLALYLSAAEMADQENYP 572 Query: 365 PVAYEFFTQAFILYEEEIADSKAQITALHLIIGTLQRMNIFGVENRDTLTHKTTGYSAKL 544 AYEFFTQAF +YEE + DS+ Q L +IIG LQ+ F V++ DTL K T Y++KL Sbjct: 573 DFAYEFFTQAFSIYEESVLDSELQYQQLLMIIGKLQKTRNFSVDDYDTLITKCTLYASKL 632 Query: 545 LKKPDQCRAVYACSHLFW 598 LKKPDQC +Y SHL+W Sbjct: 633 LKKPDQCCGIYLASHLWW 650
>VPS35_YEAST (P34110) Vacuolar protein sorting-associated protein VPS35| Length = 944 Score = 103 bits (256), Expect = 5e-22 Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 26/219 (11%) Frame = +2 Query: 29 QNSVARLIHMLHNDDN-------------DEMLKILCTVQKHILQGGPKRLPFTVPSLVF 169 Q +A LIH + N + + L+IL ++ ++GG + +T P+++ Sbjct: 531 QEKLAHLIHWIMNTTSRKQTMKNKIQFSLEAQLEILLLIKSSFIKGGIN-VKYTFPAIIT 589 Query: 170 SALKLVRRLQ---------GQDGDVTGEEVPATPKKIFQILHQTIEAL--QCI-PCPELS 313 + KL+R+ + D K++F+ + + I + C C +L Sbjct: 590 NFWKLMRKCRMIQEYLLKKRPDNKTLLSHYSNLLKQMFKFVSRCINDIFNSCNNSCTDLI 649 Query: 314 LRLYLQCAEAANDCDLEPVAYEFFTQAFILYEEEIADSKAQITALHLIIGTLQR-MNIFG 490 L+L LQCA A+ L ++Y+FF+QAF ++EE ++DSK Q+ AL I +LQ+ +++ Sbjct: 650 LKLNLQCAILADQLQLNEISYDFFSQAFTIFEESLSDSKTQLQALIYIAQSLQKTRSLYK 709 Query: 491 VENRDTLTHKTTGYSAKLLKKPDQCRAVYACSHLFWTDD 607 D+L + T + +KLLKK DQCRAVY CSHL+W + Sbjct: 710 EAYYDSLIVRCTLHGSKLLKKQDQCRAVYLCSHLWWATE 748
>MSH6_DROME (Q9VUM0) Probable DNA mismatch repair protein MSH6| Length = 1190 Score = 32.0 bits (71), Expect = 1.4 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%) Frame = +2 Query: 305 ELSLRLYLQCAEAANDCDLEPVAYEFFTQAFILYEEEIADSKAQITAL----HLIIG--T 466 +L+L+ QC + C LEP + +++AD+K + + H+++ T Sbjct: 526 KLALKALGQCIFFIHKCKLEPKVLPMARYQLYVPPDQLADAKPAVASTLRRSHMVLDATT 585 Query: 467 LQRMNIFGVENR--DTLTHKTTGYSAKLL 547 L + I G E+ TL H T + +LL Sbjct: 586 LSNLRIIGEEHSLLSTLDHCCTKFGKRLL 614
>RGA4_SCHPO (O74360) Probable Rho-type GTPase-activating protein 4| Length = 933 Score = 32.0 bits (71), Expect = 1.4 Identities = 33/132 (25%), Positives = 59/132 (44%) Frame = +2 Query: 179 KLVRRLQGQDGDVTGEEVPATPKKIFQILHQTIEALQCIPCPELSLRLYLQCAEAANDCD 358 K+V L+ +D + E + +F+ + L+ +P P ++ Y AAN C Sbjct: 793 KIVALLRNEDTVLDPSEDISAVTSVFK------QYLRNLPNPIITYDQYFPFITAAN-C- 844 Query: 359 LEPVAYEFFTQAFILYEEEIADSKAQITALHLIIGTLQRMNIFGVENRDTLTHKTTGYSA 538 +++ FI+ + + + A+I L LII L R+ + NR T + +S Sbjct: 845 ---ASFQDKLDGFIMVIKSLPPAHAEI--LQLIIRHLARVAAYSHANRMTSKNLAVVFSP 899 Query: 539 KLLKKPDQCRAV 574 L++ PD R V Sbjct: 900 TLIRDPDNSRDV 911
>CARA_GRATL (Q6B940) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase glutamine chain) Length = 395 Score = 31.6 bits (70), Expect = 1.9 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Frame = +1 Query: 436 NYCTSPNNW--NPSADEYIWGGK*RHPHS*DNRVLSKTSKEA*SMPGSLCMFTPFLD 600 N C SPNNW S YI+ + H D R L+K ++ SM G C+ + +L+ Sbjct: 87 NICFSPNNWRQQESFINYIFNNQIPHIFGIDTRALTKHLRKTGSMNG--CISSQYLN 141
>PPSB_MYCTU (Q10978) Phenolpthiocerol synthesis polyketide synthase ppsB| Length = 1538 Score = 31.2 bits (69), Expect = 2.5 Identities = 26/77 (33%), Positives = 36/77 (46%) Frame = +2 Query: 335 AEAANDCDLEPVAYEFFTQAFILYEEEIADSKAQITALHLIIGTLQRMNIFGVENRDTLT 514 A+ A +E A+ TQA I E A + A +L IGTLQR + DT+T Sbjct: 818 ADGAYHTFIEISAHPLLTQA-IADTLEDAHRPTKSAAKYLSIGTLQR------DADDTVT 870 Query: 515 HKTTGYSAKLLKKPDQC 565 +T Y+A + P C Sbjct: 871 FRTNLYTADIAHPPHTC 887
>KUP_STRP8 (Q8P0C8) Probable potassium transport system protein kup| Length = 666 Score = 30.0 bits (66), Expect = 5.5 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +3 Query: 192 DYKVKMEMSLGRKFPQLLRRYFRSCIRLLKHS 287 DY V++E+ LG + PQ + RY R+ + L S Sbjct: 539 DYMVRVELYLGFRMPQAVPRYLRTIVHDLMES 570
>FKBP3_DEBHA (Q6BSE7) FK506-binding protein 3 (EC 5.2.1.8) (Peptidyl-prolyl| cis-trans isomerase) (PPIase) (Rotamase) Length = 437 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +3 Query: 129 VPSVYLSLCRP*YSPLSSWSDDYKVKMEMSLGRKFPQLLR-RYFRSCIRLLKHSNVFLVQ 305 +P +L ++P+ + D+Y V + ++L P+ + + S +RLLK SN+F+ Sbjct: 5 IPISTYNLALQPFNPVQAIDDEYPVTIRLTLAAVDPEAVDDKAEPSTLRLLKRSNLFVDD 64 Query: 306 NCLSD 320 L D Sbjct: 65 EDLDD 69
>NOC41_XENLA (Q6NRQ2) Nucleolar complex protein 4 homolog A (NOC4 protein| homolog A) (NOC4-like protein A) (Nucleolar complex-associated protein 4-like protein A) Length = 526 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = -1 Query: 176 ERRILRTAQ*KVDAWDLPEVYASEQYIRSSTSRRYHHCATCE*GVLQNSA 27 E+R L + LP+ Y++E + RY+ CA C +LQ+S+ Sbjct: 72 EKRELYIGDLPAENGTLPDTYSAEDKYKMWMRHRYNSCAACILDLLQHSS 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,882,021 Number of Sequences: 219361 Number of extensions: 1572134 Number of successful extensions: 3903 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3800 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3895 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
