ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags32b04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008O13, full insert sequence Length = 1352 Score = 157 bits (79), Expect = 4e-35 Identities = 165/192 (85%), Gaps = 4/192 (2%) Strand = Plus / Plus Query: 128 catccgcaccctggccgacatcaaccgcgccccctccggattcccagg---cgcaggcgg 184 |||||||||||| || ||||||| |||| ||| ||||| ||||| || || ||||| Sbjct: 169 catccgcaccctcgcggacatcagccgctgcccgtccggcttccctgggggcggcggcgg 228 Query: 185 cagcggcagcgactccgatgagccccaggagtactacaccggcggcgagaagagtgggat 244 | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 cggcggcagcgactccgacgagccccaggagtactacaccggcggcgagaagagtgggat 288 Query: 245 gcttgttcaagatccaacaaggagaaataatgtangactcaatctttgagcaagctagag 304 ||||||||| || |||||||| ||||| | ||| ||||||||||| || ||||||||| Sbjct: 289 gcttgttcaggacccaacaagaagaaacactgt-ggactcaatcttcgatcaagctagac 347 Query: 305 tgatgggcgctc 316 |||||| |||| Sbjct: 348 agatgggtgctc 359 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 28 acgcgacccgcgagccaaaccctacc 53 |||||||||||||||||||||||||| Sbjct: 29 acgcgacccgcgagccaaaccctacc 54 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cggcgatgagctcctccaac 83 |||||||||||||||||||| Sbjct: 96 cggcgatgagctcctccaac 115
>gb|BT017837.1| Zea mays clone EL01N0509G01.c mRNA sequence Length = 1387 Score = 115 bits (58), Expect = 1e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 180 ggcggcagcggcagcgactccgatgagccccaggagtactacaccggcggcgagaagagt 239 |||| ||||||||||||| ||| ||||| ||||| ||||||||||| |||||||||||| Sbjct: 237 ggcgacagcggcagcgacgacgacgagccacaggaatactacaccggtggcgagaagagt 296 Query: 240 gggatgcttgttcaagatccaacaaggagaaataatgt 277 || ||||||||||||||||||||||| |||||| |||| Sbjct: 297 ggaatgcttgttcaagatccaacaagaagaaatgatgt 334
>ref|XM_472780.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1026 Score = 111 bits (56), Expect = 2e-21 Identities = 100/114 (87%), Gaps = 3/114 (2%) Strand = Plus / Plus Query: 128 catccgcaccctggccgacatcaaccgcgccccctccggattccc---aggcgcaggcgg 184 |||||||||||| || ||||||| ||||| ||| ||||| ||||| |||| ||||| Sbjct: 69 catccgcaccctcgcggacatcagccgcggcccgtccggcttccctgggggcggcggcgg 128 Query: 185 cagcggcagcgactccgatgagccccaggagtactacaccggcggcgagaagag 238 | |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 129 cggcggcagcgactccgacgagccccaggagtactacaccggcggcgagaagag 182 Score = 71.9 bits (36), Expect = 2e-09 Identities = 120/147 (81%), Gaps = 1/147 (0%) Strand = Plus / Plus Query: 237 agtgggatgcttgttcaagatccaacaaggagaaataatgtangactcaatctttgagca 296 ||||||||||||||||| || |||||||| ||||| | ||| ||||||||||| || || Sbjct: 271 agtgggatgcttgttcaggacccaacaagaagaaacactgt-ggactcaatcttcgaaca 329 Query: 297 agctagagtgatgggcgctcagcaagttccactgccttcttttgatggccagtcttccag 356 ||||||| |||||| |||| |||| || || |||| | ||||| | || |||||||| Sbjct: 330 agctagacagatgggtgctctccaagatcaaccgcctccatttgaggatcaatcttccag 389 Query: 357 ctcaacaagctttacaggaacaggtcg 383 |||| |||||||||||| || ||||| Sbjct: 390 ttcaagaagctttacagggactggtcg 416
>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14, complete sequence Length = 139418 Score = 111 bits (56), Expect = 2e-21 Identities = 100/114 (87%), Gaps = 3/114 (2%) Strand = Plus / Plus Query: 128 catccgcaccctggccgacatcaaccgcgccccctccggattccc---aggcgcaggcgg 184 |||||||||||| || ||||||| ||||| ||| ||||| ||||| |||| ||||| Sbjct: 50941 catccgcaccctcgcggacatcagccgcggcccgtccggcttccctgggggcggcggcgg 51000 Query: 185 cagcggcagcgactccgatgagccccaggagtactacaccggcggcgagaagag 238 | |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 51001 cggcggcagcgactccgacgagccccaggagtactacaccggcggcgagaagag 51054 Score = 71.9 bits (36), Expect = 2e-09 Identities = 120/147 (81%), Gaps = 1/147 (0%) Strand = Plus / Plus Query: 237 agtgggatgcttgttcaagatccaacaaggagaaataatgtangactcaatctttgagca 296 ||||||||||||||||| || |||||||| ||||| | ||| ||||||||||| || || Sbjct: 53335 agtgggatgcttgttcaggacccaacaagaagaaacactgt-ggactcaatcttcgaaca 53393 Query: 297 agctagagtgatgggcgctcagcaagttccactgccttcttttgatggccagtcttccag 356 ||||||| |||||| |||| |||| || || |||| | ||||| | || |||||||| Sbjct: 53394 agctagacagatgggtgctctccaagatcaaccgcctccatttgaggatcaatcttccag 53453 Query: 357 ctcaacaagctttacaggaacaggtcg 383 |||| |||||||||||| || ||||| Sbjct: 53454 ttcaagaagctttacagggactggtcg 53480 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 28 acgcgacccgcgagccaaaccctacc 53 |||||||||||||||||||||||||| Sbjct: 50801 acgcgacccgcgagccaaaccctacc 50826 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cggcgatgagctcctccaac 83 |||||||||||||||||||| Sbjct: 50868 cggcgatgagctcctccaac 50887
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 111 bits (56), Expect = 2e-21 Identities = 100/114 (87%), Gaps = 3/114 (2%) Strand = Plus / Plus Query: 128 catccgcaccctggccgacatcaaccgcgccccctccggattccc---aggcgcaggcgg 184 |||||||||||| || ||||||| ||||| ||| ||||| ||||| |||| ||||| Sbjct: 23160749 catccgcaccctcgcggacatcagccgcggcccgtccggcttccctgggggcggcggcgg 23160808 Query: 185 cagcggcagcgactccgatgagccccaggagtactacaccggcggcgagaagag 238 | |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 23160809 cggcggcagcgactccgacgagccccaggagtactacaccggcggcgagaagag 23160862 Score = 71.9 bits (36), Expect = 2e-09 Identities = 120/147 (81%), Gaps = 1/147 (0%) Strand = Plus / Plus Query: 237 agtgggatgcttgttcaagatccaacaaggagaaataatgtangactcaatctttgagca 296 ||||||||||||||||| || |||||||| ||||| | ||| ||||||||||| || || Sbjct: 23163143 agtgggatgcttgttcaggacccaacaagaagaaacactgt-ggactcaatcttcgaaca 23163201 Query: 297 agctagagtgatgggcgctcagcaagttccactgccttcttttgatggccagtcttccag 356 ||||||| |||||| |||| |||| || || |||| | ||||| | || |||||||| Sbjct: 23163202 agctagacagatgggtgctctccaagatcaaccgcctccatttgaggatcaatcttccag 23163261 Query: 357 ctcaacaagctttacaggaacaggtcg 383 |||| |||||||||||| || ||||| Sbjct: 23163262 ttcaagaagctttacagggactggtcg 23163288 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 28 acgcgacccgcgagccaaaccctacc 53 |||||||||||||||||||||||||| Sbjct: 23160609 acgcgacccgcgagccaaaccctacc 23160634 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cggcgatgagctcctccaac 83 |||||||||||||||||||| Sbjct: 23160676 cggcgatgagctcctccaac 23160695
>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02, complete sequence Length = 121337 Score = 71.9 bits (36), Expect = 2e-09 Identities = 120/147 (81%), Gaps = 1/147 (0%) Strand = Plus / Plus Query: 237 agtgggatgcttgttcaagatccaacaaggagaaataatgtangactcaatctttgagca 296 ||||||||||||||||| || |||||||| ||||| | ||| ||||||||||| || || Sbjct: 1296 agtgggatgcttgttcaggacccaacaagaagaaacactgt-ggactcaatcttcgaaca 1354 Query: 297 agctagagtgatgggcgctcagcaagttccactgccttcttttgatggccagtcttccag 356 ||||||| |||||| |||| |||| || || |||| | ||||| | || |||||||| Sbjct: 1355 agctagacagatgggtgctctccaagatcaaccgcctccatttgaggatcaatcttccag 1414 Query: 357 ctcaacaagctttacaggaacaggtcg 383 |||| |||||||||||| || ||||| Sbjct: 1415 ttcaagaagctttacagggactggtcg 1441
>gb|AY389684.1| Hyacinthus orientalis Fas-associated factor 1 mRNA, partial cds Length = 884 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 192 agcgactccgatgagccccaggagtactacaccggcggcgagaagagtgggatgcttgtt 251 ||||||||||| | ||| ||||| ||||||||||| || || || ||||| ||||||||| Sbjct: 377 agcgactccgacgggccgcaggaatactacaccgggggagaaaaaagtggaatgcttgtt 436 Query: 252 caagatcc 259 |||||||| Sbjct: 437 caagatcc 444
>gb|BT013918.1| Lycopersicon esculentum clone 132915F, mRNA sequence Length = 1394 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 195 gactccgatgagccccaggagtactacaccggcggcgagaagagtgggatgcttgttcaa 254 |||||||||||||| || ||||| || || ||||| ||||| || || |||||||||||| Sbjct: 411 gactccgatgagcctcaagagtattatactggcggagagaaaagcggaatgcttgttcaa 470 Query: 255 gatcca 260 |||||| Sbjct: 471 gatcca 476
>gb|AY572783.1| Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX3) mRNA, complete cds Length = 1062 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 192 agcgactccgatgagccccaggagtactacaccggcggcgagaagagtgggatgcttgtt 251 ||||||||||||| || || || |||| |||||| ||||| || ||||| ||||||||| Sbjct: 103 agcgactccgatggacctcaagaatacttcaccggtggcgaaaaaagtggtatgcttgtt 162 Query: 252 caagatccaacaa 264 |||||||| |||| Sbjct: 163 caagatcctacaa 175
>ref|NM_118336.2| Arabidopsis thaliana pux3 (LANT UBX DOMAIN-CONTAINING PROTEIN 3) AT4G22150 (pux3) mRNA, complete cds Length = 1039 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 195 gactccgatgagccccaggagtactacaccggcggcgagaagagtgggatgcttgttcaa 254 |||||||||| || || || |||| |||||| ||||| || ||||| |||||||||||| Sbjct: 106 gactccgatggacctcaagaatacttcaccggtggcgaaaaaagtggtatgcttgttcaa 165 Query: 255 gatccaacaa 264 ||||| |||| Sbjct: 166 gatcctacaa 175
>gb|BT010440.1| Arabidopsis thaliana At4g22150 mRNA, complete cds Length = 909 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 195 gactccgatgagccccaggagtactacaccggcggcgagaagagtgggatgcttgttcaa 254 |||||||||| || || || |||| |||||| ||||| || ||||| |||||||||||| Sbjct: 106 gactccgatggacctcaagaatacttcaccggtggcgaaaaaagtggtatgcttgttcaa 165 Query: 255 gatccaacaa 264 ||||| |||| Sbjct: 166 gatcctacaa 175
>dbj|AK176241.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL23-13-D09 Length = 1047 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 195 gactccgatgagccccaggagtactacaccggcggcgagaagagtgggatgcttgttcaa 254 |||||||||| || || || |||| |||||| ||||| || ||||| |||||||||||| Sbjct: 115 gactccgatggacctcaagaatacttcaccggtggcgaaaaaagtggtatgcttgttcaa 174 Query: 255 gatccaacaa 264 ||||| |||| Sbjct: 175 gatcctacaa 184
>gb|AC155729.3| Mus musculus 6 BAC RP24-173B18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 198782 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Plus Query: 173 aggcgcaggcggcagcggcagcg 195 ||||||||||||||||||||||| Sbjct: 92961 aggcgcaggcggcagcggcagcg 92983
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 181 gcggcagcggcagcgactccga 202 |||||||||||||||||||||| Sbjct: 5565673 gcggcagcggcagcgactccga 5565652
>gb|AC132214.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0040M05, from chromosome 3, complete sequence Length = 153126 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 181 gcggcagcggcagcgactccga 202 |||||||||||||||||||||| Sbjct: 109205 gcggcagcggcagcgactccga 109184
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 181 gcggcagcggcagcgactccga 202 |||||||||||||||||||||| Sbjct: 5564888 gcggcagcggcagcgactccga 5564867
>gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0014O06, complete sequence Length = 168031 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 181 gcggcagcggcagcgactccga 202 |||||||||||||||||||||| Sbjct: 29372 gcggcagcggcagcgactccga 29351
>gb|AY566230.2| Xenopus laevis ninein-like protein (Nlp) mRNA, complete cds Length = 7192 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 347 agtcttccagctcaacaagctt 368 |||||||||||||||||||||| Sbjct: 3787 agtcttccagctcaacaagctt 3766
>ref|XM_527699.1| PREDICTED: Pan troglodytes similar to Hoxa-9 (LOC472324), mRNA Length = 738 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 ggattcccaggcgcaggcggc 185 ||||||||||||||||||||| Sbjct: 194 ggattcccaggcgcaggcggc 174
>gb|AY542967.1| Bigelowiella natans translation initiation factor 6 (eIF6) mRNA, complete cds Length = 1083 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 cacgtcggcgatgagctcctc 79 ||||||||||||||||||||| Sbjct: 524 cacgtcggcgatgagctcctc 504
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 gcgcaggcggcagcggcagcg 195 ||||||||||||||||||||| Sbjct: 4980330 gcgcaggcggcagcggcagcg 4980350
>gb|AC146102.2| Pan troglodytes BAC clone RP43-21L13 from 7, complete sequence Length = 191971 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 ggattcccaggcgcaggcggc 185 ||||||||||||||||||||| Sbjct: 170346 ggattcccaggcgcaggcggc 170366
>gb|AC096792.12| Rattus norvegicus 7 BAC CH230-8O15 (Children's Hospital Oakland Research Institute) complete sequence Length = 205454 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 301 agagtgatgggcgctcagcaagttc 325 ||||||||||||||||||| ||||| Sbjct: 152280 agagtgatgggcgctcagctagttc 152304
>gb|BT023769.1| Drosophila melanogaster LP04777 full insert cDNA Length = 2145 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 caggcgcaggcggcagcggcagcga 196 ||||||||||||||||| ||||||| Sbjct: 1784 caggcgcaggcggcagccgcagcga 1808
>ref|NM_135083.2| Drosophila melanogaster CG6634-RA (nmr2), mRNA Length = 2917 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 caggcgcaggcggcagcggcagcga 196 ||||||||||||||||| ||||||| Sbjct: 1796 caggcgcaggcggcagccgcagcga 1820
>gb|AC116608.1| Papio hamadryas chromosome , clone RP41-155I24, complete sequence Length = 161654 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 ggattcccaggcgcaggcggc 185 ||||||||||||||||||||| Sbjct: 96036 ggattcccaggcgcaggcggc 96016
>gb|AC004080.2| Homo sapiens PAC clone RP1-170O19 from 7p15-p21, complete sequence Length = 129355 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 ggattcccaggcgcaggcggc 185 ||||||||||||||||||||| Sbjct: 39899 ggattcccaggcgcaggcggc 39919
>gb|AC161061.2| Pan troglodytes BAC clone CH251-489A6 from chromosome 7, complete sequence Length = 177652 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 ggattcccaggcgcaggcggc 185 ||||||||||||||||||||| Sbjct: 102395 ggattcccaggcgcaggcggc 102415
>gb|AC011063.8|AC011063 Drosophila melanogaster, chromosome 2L, region 25D-25D, BAC clone BACR44J04, complete sequence Length = 164884 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 caggcgcaggcggcagcggcagcga 196 ||||||||||||||||| ||||||| Sbjct: 77300 caggcgcaggcggcagccgcagcga 77324
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 177 gcaggcggcagcggcagcgactccg 201 ||||||||||||||||||| ||||| Sbjct: 2242699 gcaggcggcagcggcagcggctccg 2242723
>gb|AE003610.3| Drosophila melanogaster chromosome 2L, section 19 of 83 of the complete sequence Length = 260249 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 caggcgcaggcggcagcggcagcga 196 ||||||||||||||||| ||||||| Sbjct: 31010 caggcgcaggcggcagccgcagcga 31034
>ref|NM_114784.2| Arabidopsis thaliana unknown protein AT3G49250 mRNA, complete cds Length = 1810 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 tgttcaagatccaacaagga 267 |||||||||||||||||||| Sbjct: 243 tgttcaagatccaacaagga 262
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 cgaacacgtcggcgatgagc 74 |||||||||||||||||||| Sbjct: 2131879 cgaacacgtcggcgatgagc 2131898
>ref|XM_362883.1| Magnaporthe grisea 70-15 hypothetical protein (MG08554.4) partial cds Length = 1692 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 cgcaggcggcagcggcagcg 195 |||||||||||||||||||| Sbjct: 27 cgcaggcggcagcggcagcg 46
>gb|AY587061.1| Sus scrofa ataxia-telangiectasia mutated protein gene, exons 1 through 64 and complete cds Length = 153745 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cagcaagttccactgccttc 335 |||||||||||||||||||| Sbjct: 106454 cagcaagttccactgccttc 106435
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 cgaacacgtcggcgatgagc 74 |||||||||||||||||||| Sbjct: 3516460 cgaacacgtcggcgatgagc 3516479
>gb|AC147978.3| Pan troglodytes BAC clone CH251-94E4 from 7, complete sequence Length = 206433 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 tcttccagctcaacaagctt 368 |||||||||||||||||||| Sbjct: 26777 tcttccagctcaacaagctt 26796
>gb|AC147977.2| Pan troglodytes BAC clone CH251-486H24 from 7, complete sequence Length = 213806 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 tcttccagctcaacaagctt 368 |||||||||||||||||||| Sbjct: 30668 tcttccagctcaacaagctt 30649
>gb|AC145999.3| Pan troglodytes BAC clone RP43-138L12 from 7, complete sequence Length = 182926 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 tcttccagctcaacaagctt 368 |||||||||||||||||||| Sbjct: 121412 tcttccagctcaacaagctt 121431
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 ccctggccgacatcaaccgcgccc 159 |||||||||| ||||||||||||| Sbjct: 940972 ccctggccgagatcaaccgcgccc 940995
>ref|XM_843547.1| PREDICTED: Canis familiaris similar to plakophilin 1 isoform 1a, transcript variant 2 (LOC607140), mRNA Length = 2280 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cgtcggcgatgagctcctcc 80 |||||||||||||||||||| Sbjct: 1114 cgtcggcgatgagctcctcc 1095
>ref|XM_851528.1| PREDICTED: Canis familiaris similar to plakophilin 1 isoform 1a, transcript variant 3 (LOC607140), mRNA Length = 2184 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cgtcggcgatgagctcctcc 80 |||||||||||||||||||| Sbjct: 1114 cgtcggcgatgagctcctcc 1095
>emb|AL158051.10| Human DNA sequence from clone RP1-160B9 on chromosome 6q12-13 Contains part of the BAI3 gene for brain-specific angiogenesis inhibitor 3, complete sequence Length = 69522 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 ttccactgccttcttttgat 342 |||||||||||||||||||| Sbjct: 55567 ttccactgccttcttttgat 55586
>gb|AE008758.1| Salmonella typhimurium LT2, section 62 of 220 of the complete genome Length = 22470 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 caacaagctttacaggaaca 378 |||||||||||||||||||| Sbjct: 578 caacaagctttacaggaaca 597
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 cgaacacgtcggcgatgagc 74 |||||||||||||||||||| Sbjct: 3257687 cgaacacgtcggcgatgagc 3257706
>emb|AL627271.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 7/20 Length = 233050 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 caacaagctttacaggaaca 378 |||||||||||||||||||| Sbjct: 129670 caacaagctttacaggaaca 129651
>emb|AL161556.2|ATCHRIV56 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 56 Length = 196247 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 237 agtgggatgcttgttcaagatccaacaa 264 ||||| ||||||||||||||||| |||| Sbjct: 160168 agtggtatgcttgttcaagatcctacaa 160141
>emb|AL161501.2|ATCHRIV13 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13 Length = 200001 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 cgcaggcggcagcggcagcg 195 |||||||||||||||||||| Sbjct: 76590 cgcaggcggcagcggcagcg 76571
>emb|AL132956.2|ATF2K15 Arabidopsis thaliana DNA chromosome 3, BAC clone F2K15 Length = 129757 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 tgttcaagatccaacaagga 267 |||||||||||||||||||| Sbjct: 63106 tgttcaagatccaacaagga 63087
>emb|AL021712.2|ATT10I14 Arabidopsis thaliana DNA chromosome 4, BAC clone T10I14 (ESSA project) Length = 82891 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 237 agtgggatgcttgttcaagatccaacaa 264 ||||| ||||||||||||||||| |||| Sbjct: 2826 agtggtatgcttgttcaagatcctacaa 2799
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 catccgcaccctggccgaca 147 |||||||||||||||||||| Sbjct: 848260 catccgcaccctggccgaca 848241
>gb|AC002505.3| Arabidopsis thaliana chromosome 2 clone T9J22 map B68, complete sequence Length = 115851 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 cgcaggcggcagcggcagcg 195 |||||||||||||||||||| Sbjct: 114696 cgcaggcggcagcggcagcg 114677
>gb|AY090286.1| Arabidopsis thaliana AT3g49250/F2K15_110 mRNA, complete cds Length = 1263 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 tgttcaagatccaacaagga 267 |||||||||||||||||||| Sbjct: 48 tgttcaagatccaacaagga 67
>ref|NM_001024310.1| Rattus norvegicus similar to ADP-ribosylation-like factor 6-interacting protein 6 (LOC499798), mRNA Length = 1745 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ccgcgacttgcgagcagagt 22 |||||||||||||||||||| Sbjct: 151 ccgcgacttgcgagcagagt 170
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 119 gcgcgggggcatccgcaccctggccgac 146 ||||||||||||| || ||||||||||| Sbjct: 4163947 gcgcgggggcatcggcgccctggccgac 4163974
>gb|AY049288.1| Arabidopsis thaliana AT3g49250/F2K15_110 mRNA, complete cds Length = 1758 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 tgttcaagatccaacaagga 267 |||||||||||||||||||| Sbjct: 191 tgttcaagatccaacaagga 210
>gb|BC079329.1| Rattus norvegicus similar to ADP-ribosylation-like factor 6-interacting protein 6, mRNA (cDNA clone MGC:94747 IMAGE:7096035), complete cds Length = 1745 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ccgcgacttgcgagcagagt 22 |||||||||||||||||||| Sbjct: 151 ccgcgacttgcgagcagagt 170
>gb|DQ350729.1| Ajellomyces capsulatus nitrosative stress induced transcription 75 (NIT75) gene, partial sequence Length = 1413 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gatgcttgttcaagatccaa 261 |||||||||||||||||||| Sbjct: 804 gatgcttgttcaagatccaa 785
>emb|BX824613.1|CNS0A6Y8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH5ZD11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1724 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 tgttcaagatccaacaagga 267 |||||||||||||||||||| Sbjct: 244 tgttcaagatccaacaagga 263
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tggccgacatcaaccgcgcc 158 |||||||||||||||||||| Sbjct: 66863 tggccgacatcaaccgcgcc 66882
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 caacaagctttacaggaaca 378 |||||||||||||||||||| Sbjct: 1588823 caacaagctttacaggaaca 1588804
>gb|AC004857.1|AC004857 Homo sapiens PAC clone RP4-685A2 from 7p21-p22, complete sequence Length = 109359 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 tcttccagctcaacaagctt 368 |||||||||||||||||||| Sbjct: 86877 tcttccagctcaacaagctt 86858
>gb|AF198618.1|AF198618 Streptomyces viridosporus xylanase (svxA) gene, complete cds Length = 1074 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ccgatgagccccaggagtac 218 |||||||||||||||||||| Sbjct: 133 ccgatgagccccaggagtac 152
>gb|AF149414.1|T19J18 Arabidopsis thaliana BAC T19J18 Length = 43175 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 cgcaggcggcagcggcagcg 195 |||||||||||||||||||| Sbjct: 6287 cgcaggcggcagcggcagcg 6268
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 caacaagctttacaggaaca 378 |||||||||||||||||||| Sbjct: 1278460 caacaagctttacaggaaca 1278479
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 cgaacacgtcggcgatgagc 74 |||||||||||||||||||| Sbjct: 1594982 cgaacacgtcggcgatgagc 1594963 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,942,684 Number of Sequences: 3902068 Number of extensions: 2942684 Number of successful extensions: 65387 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64536 Number of HSP's gapped (non-prelim): 842 length of query: 426 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 404 effective length of database: 17,147,199,772 effective search space: 6927468707888 effective search space used: 6927468707888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
