>SYD_STRT2 (Q5M283) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 583

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
 Frame = +3

Query: 30  GKTITIGGEHGTVAWVDLWR---GIFFCDVLKKRPLLQDVPLPVPARSSWDRLLRNGNPS 200
           G TIT+ G      WV   R   G+ F D+  +  L+Q V  P  A ++      +    
Sbjct: 16  GTTITLKG------WVSRRRNLGGLIFIDLRDREGLMQLVVNPENADAAVVETAESLRSE 69

Query: 201 YLRDVTIS-----QNKDSIKY--VELEFRSRQVLNAAATTPVSYTDWV 323
           ++ +VT +     Q  D++    VEL+ +  +VLN A TTP    D V
Sbjct: 70  FVIEVTGTVEAREQANDNLPTGAVELKVKDLKVLNTAKTTPFEIKDGV 117

>LETM1_HUMAN (O95202) Leucine zipper-EF-hand-containing transmembrane protein 1,|
           mitochondrial precursor
          Length = 739

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
 Frame = -3

Query: 434 RVPALVQTTNRY----------CHVPCCGLPAITDDLRLRFPCCVIPHPVSVGNRGGGCG 285
           R PA +    RY           H+ C     + + L + F CC   HPV   +RG   G
Sbjct: 12  RAPARLPPPPRYTVPRGSPGDPAHLSCASTLGLRNCLNVPFGCCTPIHPVYTSSRGDHLG 71

Query: 284 VEHLS*PEFQLNILDRVFVLTDSYVPQVAGVTISEEAIPARPCWH 150
              L  PE  L I+ R    + S    V  V +  + +P R  WH
Sbjct: 72  CWALR-PEC-LRIVSRAPWTSTS----VGFVAVGPQCLPVRG-WH 109

>SUIS_HUMAN (P14410) Sucrase-isomaltase, intestinal [Contains: Sucrase (EC|
           3.2.1.48); Isomaltase (EC 3.2.1.10)]
          Length = 1826

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 21/82 (25%), Positives = 37/82 (45%)
 Frame = -3

Query: 293 GCGVEHLS*PEFQLNILDRVFVLTDSYVPQVAGVTISEEAIPARPCWHRQWNILEEWAFL 114
           GC V  L+ P F  +ILD++          +   TI  +A+     W +Q+++   + + 
Sbjct: 518 GCNVNKLNYPPFTPDILDKL----------MYSKTICMDAVQN---WGKQYDVHSLYGYS 564

Query: 113 EHITKEDATPEVHPGDRAMLTT 48
             I  E A  +V P  R+ + T
Sbjct: 565 MAIATEQAVQKVFPNKRSFILT 586

>SYD_STRT1 (Q5LXN1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 583

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
 Frame = +3

Query: 30  GKTITIGGEHGTVAWVDLWR---GIFFCDVLKKRPLLQDVPLPVPARSSWDRLLRNGNPS 200
           G TIT+ G      WV   R   G+ F D+  +  L+Q V  P  A ++      +    
Sbjct: 16  GTTITLKG------WVSRRRNLGGLIFIDLRDREGLMQLVVNPENADAAVVETAESLRSE 69

Query: 201 YLRDVTIS-----QNKDSIKY--VELEFRSRQVLNAAATTPVSYTDWV 323
           ++ +VT +     Q  D++    VEL+    +VLN A TTP    D V
Sbjct: 70  FVIEVTGTVEAREQANDNLPTGAVELKVEDLKVLNTAKTTPFEIKDGV 117

>CLK3_RAT (Q63117) Dual specificity protein kinase CLK3 (EC 2.7.12.1)|
           (CDC-like kinase 3)
          Length = 490

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 123 GVS*AHHKRRCHARGPPRRPCHAHH 49
           G S + H+RR   RGP R   HAHH
Sbjct: 85  GSSRSRHRRRSRERGPYRTRKHAHH 109

>CLK3_HUMAN (P49761) Dual specificity protein kinase CLK3 (EC 2.7.12.1)|
           (CDC-like kinase 3)
          Length = 490

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 123 GVS*AHHKRRCHARGPPRRPCHAHH 49
           G S + H+RR   RGP R   HAHH
Sbjct: 85  GPSRSRHRRRSRERGPYRTRKHAHH 109

>HMMR_MOUSE (Q00547) Hyaluronan mediated motility receptor (Intracellular|
           hyaluronic acid-binding protein) (Receptor for
           hyaluronan-mediated motility)
          Length = 794

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 21/114 (18%), Positives = 47/114 (41%)
 Frame = +3

Query: 186 NGNPSYLRDVTISQNKDSIKYVELEFRSRQVLNAAATTPVSYTDWVRNNTTRKSQSQVIR 365
           N     LRDVT     +  KY +     R V     +    Y D  ++     +Q + ++
Sbjct: 467 NDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESVQ 526

Query: 366 DGWKSTTWNVAIPVGGLYEGWHPDCVFDVKDVSLEPCLSDWMTMLSSKTMQELQ 527
           + +  T  ++   V    E +    + +++D+ LE         ++ K+++++Q
Sbjct: 527 EKYNDTAQSLR-DVSAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQ 579

>GAP_CAEEL (P34288) GTPase-activating protein GAP (CeGAP)|
          Length = 1317

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -3

Query: 125 WAFLEHITKEDATPEVHPGD 66
           W F E  T EDA PE HP D
Sbjct: 856 WMFDESSTTEDAVPEQHPAD 875


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,978,561
Number of Sequences: 219361
Number of extensions: 2184880
Number of successful extensions: 5978
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5972
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)