Clone Information

BLAST Search Result

Clone Name	bags32a17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PATL2_ARATH (Q56ZI2) Patellin-2	33	0.58
2	TRDN_RABIT (Q28820) Triadin	33	0.76
3	NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurof...	33	0.76
4	ZC3H6_MOUSE (Q8BYK8) Zinc finger CCCH-type domain-containing pro...	33	0.76
5	ZC3H6_HUMAN (P61129) Zinc finger CCCH-type domain-containing pro...	32	1.3
6	NFH_HUMAN (P12036) Neurofilament triplet H protein (200 kDa neur...	32	1.7
7	SYF2_KLULA (Q6CPI4) Pre-mRNA-splicing factor SYF2	31	2.2
8	YK02_SCHPO (Q9HDY9) Hypothetical serine/threonine-rich protein P...	31	2.2
9	FKBP4_CRYNE (Q5KIJ5) FK506-binding protein 4 (EC 5.2.1.8) (Pepti...	31	2.9
10	UBP8_HUMAN (P40818) Ubiquitin carboxyl-terminal hydrolase 8 (EC ...	31	2.9
11	H1_NEUCR (Q8J0U2) Histone H1	31	2.9
12	POLS2_RAT (Q5K2P9) Polyserase-2 precursor (EC 3.4.21.-) (Polyser...	30	3.8
13	IGA1_STRSA (Q59986) Immunoglobulin A1 protease precursor (EC 3.4...	30	3.8
14	IF2P_HUMAN (O60841) Eukaryotic translation initiation factor 5B ...	30	3.8
15	T2FA_DROME (Q05913) Transcription initiation factor IIF alpha su...	30	4.9
16	AP3B2_MOUSE (Q9JME5) AP-3 complex subunit beta-2 (Adapter-relate...	30	4.9
17	YHGN_SHIFL (P67145) UPF0056 inner membrane protein yhgN	30	4.9
18	YHGN_ECOLI (P67143) UPF0056 inner membrane protein yhgN	30	4.9
19	YHGN_ECO57 (P67144) UPF0056 inner membrane protein yhgN	30	4.9
20	VAT1_BRARE (Q8JFV8) Synaptic vesicle membrane protein VAT-1 homo...	30	4.9
21	ADA33_MOUSE (Q923W9) ADAM 33 precursor (EC 3.4.24.-) (A disinteg...	30	4.9
22	MAK5_EMENI (Q5BCI0) ATP-dependent RNA helicase mak5 (EC 3.6.1.-)	30	4.9
23	TRDN_HUMAN (Q13061) Triadin	30	6.4
24	YN86_YEAST (P27514) Hypothetical 99.5 kDa protein in URK1-SMM1 i...	30	6.4
25	FTHS_ZYMMO (Q5NQC7) Formate--tetrahydrofolate ligase (EC 6.3.4.3...	30	6.4
26	BAP31_MOUSE (Q61335) B-cell receptor-associated protein 31 (BCR-...	30	6.4
27	XPO5_MOUSE (Q924C1) Exportin-5 (Ran-binding protein 21)	30	6.4
28	XPO5_HUMAN (Q9HAV4) Exportin-5 (Exp5) (Ran-binding protein 21)	30	6.4
29	TACY_PAEAL (P23564) Alveolysin precursor (Thiol-activated cytoly...	30	6.4
30	NPAS3_MOUSE (Q9QZQ0) Neuronal PAS domain protein 3 (Neuronal PAS...	30	6.4
31	Y571_MYCPN (P75207) Hypothetical ABC transporter ATP-binding MG3...	29	8.4
32	TUB4_AGRVI (Q44470) Putative tartrate transporter	29	8.4
33	RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-assoc...	29	8.4
34	MADCA_MOUSE (Q61826) Mucosal addressin cell adhesion molecule 1 ...	29	8.4
35	VE1_HPVR7 (O40619) Replication protein E1 (EC 3.6.1.-) (ATP-depe...	29	8.4
36	G3P_ZYMMO (P09316) Glyceraldehyde-3-phosphate dehydrogenase (EC ...	29	8.4
37	APEA_DICDI (P51173) DNA-(apurinic or apyrimidinic site) lyase (E...	29	8.4
38	KIN82_YEAST (P25341) Probable serine/threonine-protein kinase KI...	29	8.4
39	DENR_PONPY (Q5RFP5) Density-regulated protein (DRP)	29	8.4
40	DENR_HUMAN (O43583) Density-regulated protein (DRP) (DRP1 protei...	29	8.4
41	CNG1_CHICK (Q90805) Cyclic nucleotide-gated channel, cone photor...	29	8.4

>PATL2_ARATH (Q56ZI2) Patellin-2|
          Length = 683

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +1

Query: 292 VSEHTPIAKQDADLSSNTMNDAGEVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAPRKKI 471
           V E TP   ++ ++   T   A      E   +K   EV  P  ++TAVK+E  A  K+I
Sbjct: 16  VKEETPAPVKEVEVPVTT-EKAVAAPAPEATEEKVVSEVAVPETEVTAVKEEEVATGKEI 74

Query: 472 TADVVCKDDG 501
                 K++G
Sbjct: 75  LQSESFKEEG 84

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>TRDN_RABIT (Q28820) Triadin|
          Length = 705

 Score = 32.7 bits (73), Expect = 0.76
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 367 EQKEGNMKKAKDEVKAPRKKITAVKDEAKAPRKKITADVVCKDDGRS 507
           E+KEG  KKA+ +V    KK    +D  K   K+   D+  K+ G+S
Sbjct: 309 EEKEGEKKKAEKKVTTETKKKAEKEDAKKKSEKETDIDMKKKEPGKS 355

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>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurofilament|
           protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1072

 Score = 32.7 bits (73), Expect = 0.76
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +1

Query: 313 AKQDADLSSNTMNDAGEVEQKEGNMK---KAKDEVKAPRKKITAVKDEAKAPRKKITADV 483
           AK      + ++ +A   E+ +  +K   K   EVK+P K  + +K+EAK+P K  T DV
Sbjct: 766 AKSPVKEGAKSLAEAKSPEKAKSPVKEEIKPPAEVKSPEKAKSPMKEEAKSPEKAKTLDV 825

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>ZC3H6_MOUSE (Q8BYK8) Zinc finger CCCH-type domain-containing protein 6|
          Length = 1177

 Score = 32.7 bits (73), Expect = 0.76
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
 Frame = +1

Query: 295 SEHTPIAKQDADLSSNTMNDAG-----EVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAP 459
           SEH    ++D +L    ++DAG     + E KE   +K +   +  RKK    +++ K+ 
Sbjct: 4   SEHAGHDREDGELEDGEIDDAGFEETQDQEAKENEKQKNEKAYRKSRKKHKKEREKKKSK 63

Query: 460 RKKITADVVCKDDGRSESGVTFDS 531
           R+K          G   S  + DS
Sbjct: 64  RRKHEKHKHNSPSGDDSSDYSLDS 87

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>ZC3H6_HUMAN (P61129) Zinc finger CCCH-type domain-containing protein 6|
          Length = 1189

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +1

Query: 295 SEHTPIAKQDADLSSNTMNDAG-----EVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAP 459
           SEH    ++D +L    ++DAG     + E KE   +K +   +  RKK    +++ K+ 
Sbjct: 4   SEHAGHDREDGELEDGEIDDAGFEETQDQEAKENEKQKNEKAYRKSRKKHKKEREKKKSK 63

Query: 460 RKK 468
           R+K
Sbjct: 64  RRK 66

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>NFH_HUMAN (P12036) Neurofilament triplet H protein (200 kDa neurofilament|
           protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1026

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +1

Query: 397 KDEVKAPRKKITAVKDEAKAPRKKI 471
           K+EVK+P K  + +K++AKAP K+I
Sbjct: 796 KEEVKSPEKAKSPLKEDAKAPEKEI 820



 Score = 30.8 bits (68), Expect = 2.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 361 EVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAPRK 465
           E +  E      K+E K+P K  + VK+EAK+P K
Sbjct: 693 EAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEK 727



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 361 EVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAPRK 465
           E +  E      K+E K P K  + VK+EAK+P K
Sbjct: 721 EAKSPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEK 755



 Score = 30.4 bits (67), Expect = 3.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 361 EVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAPRK 465
           E +  E      K+E K+P K  + VK+EAK P K
Sbjct: 707 EAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKTPEK 741



 Score = 30.0 bits (66), Expect = 4.9
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +1

Query: 277 PCADEVSEHTPIAKQDADLSSNTMNDAGEVEQKEGNMKKAKDEVKAPRKKITAVKDEAKA 456
           P A+E +     AK      + +  +A   E++E    K+  EVK+P K  +  K+EAK+
Sbjct: 504 PPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEA---KSPAEVKSPEKAKSPAKEEAKS 560

Query: 457 P 459
           P
Sbjct: 561 P 561



 Score = 29.3 bits (64), Expect = 8.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 361 EVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAPRK 465
           E +  E      K E K+P K  + VK+EAK+P K
Sbjct: 679 EAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEK 713



 Score = 29.3 bits (64), Expect = 8.4
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 313 AKQDADLSSNTMNDA---GEVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAP 459
           AK  A+  S    +A    EV+  E     AK+E K+P +  +  K+EAK+P
Sbjct: 524 AKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEKEEAKSP 575

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>SYF2_KLULA (Q6CPI4) Pre-mRNA-splicing factor SYF2|
          Length = 221

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +1

Query: 325 ADLSSNTMNDAGEVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAPRKKITADVVCKDDGR 504
           AD   + MND  E+E+K  +++K K EV    KK    +++  + R+  +     +D  R
Sbjct: 29  ADNKYSKMNDLMEIEKKLKSLRKQKVEVSIRNKKAIIAEEKKNSERRVYSMADDGEDKAR 88

Query: 505 SESGVTFDSLE 537
           S      D ++
Sbjct: 89  SNKSEPEDPIK 99

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>YK02_SCHPO (Q9HDY9) Hypothetical serine/threonine-rich protein P11E10.02c|
           precursor
          Length = 1082

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
 Frame = -1

Query: 539 HSRESNVTPDSLLPSS-----LQTTSAVIFFLGALASSLTAVIFFLGALTSSLAFFMFPS 375
           +++ S  TP + +P+S     LQT+S++I     ++SSLTA      ALT S+     PS
Sbjct: 532 NAKSSLSTPSTTIPTSNSSVSLQTSSSLIISSPIISSSLTATSTSTPALTHSIT----PS 587

Query: 374 FCSTSPASFIVLLLRSASCLAIGVCSETSS 285
             S + +S I       S   I VCS  +S
Sbjct: 588 NTSYT-SSLIPSSSTDYSSSLITVCSNVTS 616

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>FKBP4_CRYNE (Q5KIJ5) FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl|
           cis-trans isomerase) (PPIase) (Rotamase)
          Length = 405

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
 Frame = +1

Query: 274 LPCADE--VSEHTPIAKQDAD-LSSNTMNDAG-EVEQKEGNMKKAKDEVKAPRKKITAV- 438
           LP AD+  V E  P  K+ A+ L S    DA     QK+   KKAK E +   +K  A  
Sbjct: 221 LPAADKKPVPEAKPAQKRKAEELESPAKEDAALSKAQKKKLAKKAKVEGEKAEEKPAAAA 280

Query: 439 -------KDEAKAPRKK 468
                  K EAKAP+KK
Sbjct: 281 VAEKPATKKEAKAPQKK 297

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>UBP8_HUMAN (P40818) Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 8) (Ubiquitin-specific
           processing protease 8) (Deubiquitinating enzyme 8)
           (hUBPy)
          Length = 1118

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = +1

Query: 316 KQDADLSSNTMNDAGEVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAPRKKITADVVCKD 495
           KQ+ +L      +  E  +KE   +KAK + +A   +IT  + +AK   +K  ++   K+
Sbjct: 477 KQEKELRERQQEEQKEKLRKEEQEQKAKKKQEAEENEITEKQQKAKEEMEKKESEQAKKE 536

Query: 496 D-------GRSESGVTFDSLECHQ 546
           D       G+  +GV   S   H+
Sbjct: 537 DKETSAKRGKEITGVKRQSKSEHE 560

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>H1_NEUCR (Q8J0U2) Histone H1|
          Length = 236

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 370 QKEGNMKKAKDEVKAPRKKITAVKDEAKAPRKKI 471
           +KEG  KK   E KAP  K  A   +A AP+K++
Sbjct: 136 KKEGAAKKETKEKKAPAAKKAAAPKKAAAPKKEV 169

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>POLS2_RAT (Q5K2P9) Polyserase-2 precursor (EC 3.4.21.-) (Polyserine protease|
           2)
          Length = 875

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
 Frame = +1

Query: 1   IVQGQFCGDCLYMRYGENVLEAKSNPNWICPVCR-----GICNCS-----ICRTKRGWFP 150
           ++ G +C  CLY R GE V      P+ +CP  +     G+C        +CR +  WF 
Sbjct: 484 LLNGWWC-HCLYGRQGETVPRPGDPPHLLCPAYQEEEEAGLCWVDSSWSLLCREEGTWFL 542

Query: 151 TG 156
            G
Sbjct: 543 AG 544

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>IGA1_STRSA (Q59986) Immunoglobulin A1 protease precursor (EC 3.4.24.13) (IgA1|
           protease) (IgA-specific zinc metalloproteinase)
          Length = 1854

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
 Frame = +1

Query: 316 KQDADLSSNTMNDAGEVEQKE---------GNMKKAKDEVKAPRKKITAVKDEAKAPRKK 468
           +Q A L   T + AG + + E         GN++ A  E + P +K    K++ + P K 
Sbjct: 510 EQVASLPEYTGSQAGAIVEPEQVEPPQEYTGNIEPAAPEAENPTEKAQEPKEQKQEPEKN 569

Query: 469 I------TADVVCKDDGRSESGVTFDSLECHQD 549
           I        ++    DG+ +  V+ D++  +Q+
Sbjct: 570 IELRNVSDVELYSLADGKYKQHVSLDAIPSNQE 602

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>IF2P_HUMAN (O60841) Eukaryotic translation initiation factor 5B (eIF-5B)|
           (Translation initiation factor IF-2)
          Length = 1220

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
 Frame = +1

Query: 274 LPCADEVSEHTPIAKQDADLSSNTMNDA----GEVEQKEGNMKK--AKDEVKAPRKKITA 435
           +P ++E +E TP A +D +       D     GE E+KE   KK  +K  VKA ++ +  
Sbjct: 292 IPASEEKAE-TPTAAEDDNEGDKKKKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAK 350

Query: 436 VKDEAKAPRKK 468
           +K+E +  +++
Sbjct: 351 LKEEEERQKRE 361

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>T2FA_DROME (Q05913) Transcription initiation factor IIF alpha subunit (EC|
           2.7.11.1) (TFIIF-alpha) (Transcription factor 5 large
           chain) (TF5A)
          Length = 577

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
 Frame = +1

Query: 322 DADLSSNTMNDAGEVEQKEGNMKK---AKDEVKAPRKKITAVKDEAKAPRKKITADVVCK 492
           D +      +D  + E  +G  KK    KDEV   +KK    KD+ K            K
Sbjct: 343 DEEEDDEKKSDESDKEDADGEKKKKDKGKDEVSKDKKKKKPTKDDKKG-----------K 391

Query: 493 DDGRSESGVTF--DSLECHQDVGCVTPSK 573
            +G  +S   F  DS +   D+    P K
Sbjct: 392 SNGSGDSSTDFSSDSTDSEDDLSNGPPKK 420

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>AP3B2_MOUSE (Q9JME5) AP-3 complex subunit beta-2 (Adapter-related protein|
           complex 3 beta-2 subunit) (Beta3B-adaptin) (Adaptor
           protein complex AP-3 beta-2 subunit) (Clathrin assembly
           protein complex 3 beta-2 large chain)
          Length = 1082

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 22/87 (25%), Positives = 41/87 (47%)
 Frame = +1

Query: 277 PCADEVSEHTPIAKQDADLSSNTMNDAGEVEQKEGNMKKAKDEVKAPRKKITAVKDEAKA 456
           P ++  SE    +   +  SS+  ++  E E+K G  +  + E +  +KK T  K  ++ 
Sbjct: 695 PESESESESKSSSGSGSGESSSESDNEEEDEEKGGGSESEQSEEEDEKKKKTKKKKASEG 754

Query: 457 PRKKITADVVCKDDGRSESGVTFDSLE 537
            R+  +++        SES VT +S E
Sbjct: 755 HREGSSSEEGSDSSSSSESEVTSESEE 781

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>YHGN_SHIFL (P67145) UPF0056 inner membrane protein yhgN|
          Length = 197

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 15/58 (25%)
 Frame = -1

Query: 191 LYPSLTTFRYALPVGNHPLLV---------------LQILQLQMPRQTGHIQLGLLLA 63
           ++PS +     LP G  P +V               L +L  Q P Q GH+ + LLLA
Sbjct: 88  IFPSASGNSSGLPAGEEPFIVPLAIPLVAGPTILATLMLLSHQYPNQMGHLVIALLLA 145

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>YHGN_ECOLI (P67143) UPF0056 inner membrane protein yhgN|
          Length = 197

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 15/58 (25%)
 Frame = -1

Query: 191 LYPSLTTFRYALPVGNHPLLV---------------LQILQLQMPRQTGHIQLGLLLA 63
           ++PS +     LP G  P +V               L +L  Q P Q GH+ + LLLA
Sbjct: 88  IFPSASGNSSGLPAGEEPFIVPLAIPLVAGPTILATLMLLSHQYPNQMGHLVIALLLA 145

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>YHGN_ECO57 (P67144) UPF0056 inner membrane protein yhgN|
          Length = 197

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 15/58 (25%)
 Frame = -1

Query: 191 LYPSLTTFRYALPVGNHPLLV---------------LQILQLQMPRQTGHIQLGLLLA 63
           ++PS +     LP G  P +V               L +L  Q P Q GH+ + LLLA
Sbjct: 88  IFPSASGNSSGLPAGEEPFIVPLAIPLVAGPTILATLMLLSHQYPNQMGHLVIALLLA 145

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>VAT1_BRARE (Q8JFV8) Synaptic vesicle membrane protein VAT-1 homolog (EC|
           1.-.-.-)
          Length = 484

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +1

Query: 319 QDADLSSNTMNDAGEVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAPRKKITADVVCKDD 498
           ++ +       D  + + K+ + KK  D+ K  +KK  A K+E K  +KK  A    KDD
Sbjct: 413 KEEEKKEEAKKDEEKKDDKKKDDKKKDDKKKEDKKKDEAKKEEKKDEKKKEEAK---KDD 469

Query: 499 GRSE 510
            ++E
Sbjct: 470 KKAE 473



 Score = 29.3 bits (64), Expect = 8.4
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +1

Query: 313 AKQDADLSSNTMNDAGEVEQKEGNMKKA----KDEVKAPRKKITAVKDEAKAPRKK 468
           AK+D +   +   D  + + K+   KK     K+E K  +KK  A KD+ KA  KK
Sbjct: 421 AKKDEEKKDDKKKDDKKKDDKKKEDKKKDEAKKEEKKDEKKKEEAKKDDKKAEEKK 476

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>ADA33_MOUSE (Q923W9) ADAM 33 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 33)
          Length = 797

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = -2

Query: 460 WGPWLHP*QQ*SSSWGP*LHPWPSSCFLPSAQLHQHHSSCCCSDQHPAWQLVCAQR 293
           W P L   QQ    WGP   P P  CF     +     +  C   H    L CAQR
Sbjct: 519 WCPTLE--QQCQQLWGPGSKPAPEPCFQQMNSMGNSQGN--CGQDHKGSFLPCAQR 570

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>MAK5_EMENI (Q5BCI0) ATP-dependent RNA helicase mak5 (EC 3.6.1.-)|
          Length = 770

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +1

Query: 310 IAKQDADLSSNTMNDAGEVEQKEGNMKKAKDEVKA--PRKKITAVKDEAKAPRKKITADV 483
           + K++   + N +  A +V  K+G   K K ++KA  P+KK+   K++  A  K      
Sbjct: 119 LEKKEGASTVNEVAKAADVNGKKGKDAKNKKDIKAKEPKKKLKEQKEKDGAQAK------ 172

Query: 484 VCKDDGRSESGVTFDSLECHQD 549
               D    SG++F +LE   D
Sbjct: 173 ----DRSITSGLSFAALEDEAD 190

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>TRDN_HUMAN (Q13061) Triadin|
          Length = 728

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 21/70 (30%)
 Frame = +1

Query: 364 VEQKEGNMKKA------------KDEVKAPRKKITAVKDEAKAPRK---------KITAD 480
           +E+KEG  KKA            K+++K   +K TA+  E K P K         KI A 
Sbjct: 308 LEEKEGEKKKAEKKVTSETKKKEKEDIKKKSEKETAIDVEKKEPGKASETKQGTVKIAAQ 367

Query: 481 VVCKDDGRSE 510
              K D + E
Sbjct: 368 AAAKKDEKKE 377

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>YN86_YEAST (P27514) Hypothetical 99.5 kDa protein in URK1-SMM1 intergenic|
           region
          Length = 894

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 322 DADLSSNTMNDAGEVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAPRKKITADVV 486
           DAD  +N  N +G  E ++GN ++  D   A R+  + ++D     R  +  D++
Sbjct: 301 DADRINNDENSSGNEEDEDGNRQEVLDFQDAERELSSHLRDHVVWERNTVWKDMM 355

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>FTHS_ZYMMO (Q5NQC7) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 557

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -3

Query: 174 NLPVCIASREPSSLGSADTAVANATTNRTYPIR 76
           +LPVCIA  + S   SAD    NA T   +PIR
Sbjct: 482 DLPVCIAKTQSSF--SADPKAKNAPTGHIFPIR 512

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>BAP31_MOUSE (Q61335) B-cell receptor-associated protein 31 (BCR-associated|
           protein Bap31) (p28 Bap31)
          Length = 244

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 20/87 (22%), Positives = 40/87 (45%)
 Frame = +1

Query: 208 LIATNRAGAKXXXXXXXXXXNELPCADEVSEHTPIAKQDADLSSNTMNDAGEVEQKEGNM 387
           L+A+N A  K            +   D++ +         D+  NT     E +  + ++
Sbjct: 128 LLASNEAFKKQAESASEAAKKYMEENDQLKKGAAEDGDKLDIG-NTEMKLEENKSLKNDL 186

Query: 388 KKAKDEVKAPRKKITAVKDEAKAPRKK 468
           +K KDE+ + +KK+   ++EA A +K+
Sbjct: 187 RKLKDELASTKKKLEKAENEALAMQKQ 213

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>XPO5_MOUSE (Q924C1) Exportin-5 (Ran-binding protein 21)|
          Length = 1204

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 397  WPSSCFLPSAQLHQHHSSCCCSDQHPAWQLVCAQRPR 287
            W  +  L   Q+H  H  C  S  H A+Q+  A RPR
Sbjct: 1071 WLFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPR 1107

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>XPO5_HUMAN (Q9HAV4) Exportin-5 (Exp5) (Ran-binding protein 21)|
          Length = 1204

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 397  WPSSCFLPSAQLHQHHSSCCCSDQHPAWQLVCAQRPR 287
            W  +  L   Q+H  H  C  S  H A+Q+  A RPR
Sbjct: 1071 WLFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPR 1107

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>TACY_PAEAL (P23564) Alveolysin precursor (Thiol-activated cytolysin)|
          Length = 501

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = -3

Query: 192 FVPKS---DNLPVCIASREPSSLGSA--DTAVANATTNRTYPIRIALSFQHILTIPHVQT 28
           FVPK     N    +  R+  SL ++  D ++ ++ TNRTYP  I L+ +          
Sbjct: 65  FVPKEGIQSNGKFIVVERDKKSLTTSPVDISIVDSITNRTYPGAIQLANKDFADNQPSLV 124

Query: 27  ISAELPLD 4
           ++A  PLD
Sbjct: 125 MAARKPLD 132

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>NPAS3_MOUSE (Q9QZQ0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of|
           PAS protein 6) (MOP6)
          Length = 925

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 20/77 (25%), Positives = 31/77 (40%)
 Frame = +1

Query: 283 ADEVSEHTPIAKQDADLSSNTMNDAGEVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAPR 462
           A E SE +       D S  T ++      ++GN  +  ++ +  RKK  +  D      
Sbjct: 460 ASESSETSDSESDSKDTSGITEDNENSKSDEKGNQSENSEDPEPDRKKSGSACDN----- 514

Query: 463 KKITADVVCKDDGRSES 513
                D+ C DDG S S
Sbjct: 515 -----DMNCNDDGHSSS 526

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>Y571_MYCPN (P75207) Hypothetical ABC transporter ATP-binding MG390 homolog|
           (D02_orf660)
          Length = 660

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 13  QFCGDCLYMRYGENVLEAKSNPNWICPVCRGICNCSI 123
           QFC D L   + + V +     +W CP    + NCSI
Sbjct: 435 QFCKDKLVTLFEDKVNDCNFKVSWKCPKVINLNNCSI 471

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>TUB4_AGRVI (Q44470) Putative tartrate transporter|
          Length = 433

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -3

Query: 462 PGGLGFILDSSNLLPGGLDFILGLLHVSFLLLNFTSIIHRVAAQ 331
           P  +G+I D++    GGL F+ GLL VS ++   T ++ R A +
Sbjct: 382 PSMIGWIKDTTGSFAGGLYFVAGLLVVSAIV---TLVLSRTAPE 422

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>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular|
            protein of testis) (Proliferation potential-related
            protein) (Protein P2P-R) (Retinoblastoma-binding Q
            protein 1) (Protein RBQ-1)
          Length = 1792

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
 Frame = +1

Query: 274  LPCADEVSEHTPIAKQDADLSSNTMNDAGEVEQKEGNMKKAK-DEVK------APRKKIT 432
            LP  D+    TP+  +  D  S T     E +++E +  KAK D+ K      A  KK  
Sbjct: 977  LPSRDDA---TPVRDEPMDAESITFKSVSEKDKRERDKPKAKGDKTKRKNDGSAVSKKEN 1033

Query: 433  AVKDEAKAPRKKITAD 480
             VK  AK P++K+  +
Sbjct: 1034 IVK-PAKGPQEKVDGE 1048

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>MADCA_MOUSE (Q61826) Mucosal addressin cell adhesion molecule 1 precursor|
           (MAdCAM-1) (mMAdCAM-1)
          Length = 405

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 547 PGDIPENQMSPRTRSCHHPCRP--HQQ*SSSW 458
           P   P  ++SPRT S   PCRP  HQ   + W
Sbjct: 258 PSAPPYPKLSPRTLSSEGPCRPKIHQDLEAGW 289

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>VE1_HPVR7 (O40619) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 606

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +1

Query: 271 ELPCADEVSEHTPIAKQDADLSSNTMNDAGEVEQKEGNMKKAKDEVKAPRKKITAVKDEA 450
           E  C+D  ++   + +QDAD   + + D GE+EQ        + E K   +++  +K + 
Sbjct: 20  EADCSDLENDFEQLFEQDADSDVSDLLDNGELEQGNSLELFHQQECKQSEEQLQILKRKY 79

Query: 451 KAPR 462
            +P+
Sbjct: 80  LSPK 83

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>G3P_ZYMMO (P09316) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)|
           (GAPDH)
          Length = 337

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
 Frame = +1

Query: 310 IAKQDADLSSNTMNDAGEVEQKE-------------GNMKKAKDEVKAPRKKI--TAVKD 444
           +++ D+ L   T+ND G VE                G +    +++    KKI  TA +D
Sbjct: 22  LSRPDSGLELVTINDLGSVEGNAFLFKRDSAHGTYPGTVTTEGNDMVIDGKKIVVTAERD 81

Query: 445 EAKAPRKKITADVVCKDDG 501
            A  P KK+  D+V +  G
Sbjct: 82  PANLPHKKLGVDIVMECTG 100

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>APEA_DICDI (P51173) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)|
           (Class II apurinic/apyrimidinic(AP)-endonuclease)
          Length = 361

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +1

Query: 310 IAKQDADLSSNTMNDAGEVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAPRKKITADVVC 489
           I K++    + +  +  EVE++E   KK K   K P KK  A K  AK   K    D   
Sbjct: 15  ILKKEDGSETTSEEEKEEVEEEEEEDKKRKLVKKTPAKKAPAKKAAAKKKSKDEDEDEEE 74

Query: 490 KDDGRSESGVT 522
           K++    +  T
Sbjct: 75  KEEEEETNKTT 85

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>KIN82_YEAST (P25341) Probable serine/threonine-protein kinase KIN82 (EC|
           2.7.11.1)
          Length = 720

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +1

Query: 286 DEVSEHTP-----IAKQDADLSSNTMNDAGEVEQKEGNMKKAKDEVKA-PRKKITAVKDE 447
           D  S HTP     IAK   +LS+ ++ND  E E+ +   +K  +   A P   ++     
Sbjct: 182 DPSSFHTPSSPSYIAKDSRNLSNGSLNDINENEELQNFHRKISENGSASPLANLSLSNSP 241

Query: 448 AKAPRK 465
             +PRK
Sbjct: 242 IDSPRK 247

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>DENR_PONPY (Q5RFP5) Density-regulated protein (DRP)|
          Length = 198

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 298 EHTPIAKQDADLSSNTMNDAGEVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAPRKK 468
           E++P  KQ+A +S      AGE E+K+   +  + ++K  +K +      AK PR K
Sbjct: 71  ENSP--KQEAGISEG-QGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAK 124

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>DENR_HUMAN (O43583) Density-regulated protein (DRP) (DRP1 protein) (Smooth|
           muscle cell-associated protein 3) (SMAP-3)
          Length = 198

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 298 EHTPIAKQDADLSSNTMNDAGEVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAPRKK 468
           E++P  KQ+A +S      AGE E+K+   +  + ++K  +K +      AK PR K
Sbjct: 71  ENSP--KQEAGISEG-QGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAK 124

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>CNG1_CHICK (Q90805) Cyclic nucleotide-gated channel, cone photoreceptor,|
           subunit alpha (CNG channel 1) (CNG-1)
          Length = 735

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 23/68 (33%), Positives = 36/68 (52%)
 Frame = +1

Query: 307 PIAKQDADLSSNTMNDAGEVEQKEGNMKKAKDEVKAPRKKITAVKDEAKAPRKKITADVV 486
           P+A+ + + S+NT  D  E E+KE  +K+ K E K   KK    KD+ K  +K    D  
Sbjct: 136 PLARFNVNFSNNTNEDKKE-EKKE--VKEEKKEEKKEEKK-EEKKDDKKDDKKDDKKDDK 191

Query: 487 CKDDGRSE 510
            K++ + E
Sbjct: 192 KKEEQKKE 199


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.132    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,340,249
Number of Sequences: 219361
Number of extensions: 1722581
Number of successful extensions: 6961
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 6554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6926
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result