ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags31l08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK072971.1| Oryza sativa (japonica cultivar-group) cDNA clon... 440 e-120
2ref|NM_189505.1| Oryza sativa (japonica cultivar-group), predic... 311 1e-81
3gb|AY103819.1| Zea mays PCO095330 mRNA sequence 176 5e-41
4gb|BT018102.1| Zea mays clone EL01N0553C07.c mRNA sequence 167 5e-38
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
6dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
7gb|BT017134.1| Zea mays clone EL01N0365H03.c mRNA sequence 143 7e-31
8gb|AC135414.31| Medicago truncatula clone mth2-8n20, complete se... 56 1e-04
9gb|AC148304.3| Medicago truncatula clone mth2-21b19, complete se... 56 1e-04
10gb|AC147009.5| Medicago truncatula clone mth2-139j3, complete se... 56 1e-04
11gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 50 0.008
12emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete ... 48 0.031
13emb|BX640435.1| Bordetella parapertussis strain 12822, complete ... 48 0.031
14emb|BX640411.1| Bordetella pertussis strain Tohama I, complete g... 48 0.031
15emb|CR555306.1| Azoarcus sp. EbN1 complete genome 44 0.48
16emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 44 0.48
17dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 44 0.48
18gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 44 0.48
19gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 44 0.48
20gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 44 0.48
21dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 44 0.48
22dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 44 0.48
23emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 44 0.48
24gb|AC108399.11| Mus musculus chromosome 19, clone RP24-375O7, co... 42 1.9
25gb|AY422186.1| Homo sapiens GABA(A) receptor-associated protein-... 42 1.9
26gb|AE006028.1| Caulobacter crescentus CB15 section 354 of 359 of... 42 1.9
27gb|AC100811.2| Homo sapiens chromosome 8, clone CTD-2532M24, com... 42 1.9
28gb|AC107953.3| Homo sapiens chromosome 8, clone RP11-278I4, comp... 42 1.9
29gb|AC151346.2| Xenopus tropicalis clone ISB-384J24, complete seq... 42 1.9
30gb|AC151338.2| Xenopus tropicalis clone ISB-347F7, complete sequ... 42 1.9
31gb|AC171018.2| Gallus gallus BAC clone CH261-11F14 from chromoso... 42 1.9
32emb|AL591127.12| Mouse DNA sequence from clone RP23-370H21 on ch... 42 1.9
33emb|AL928791.10| Mouse DNA sequence from clone RP23-65N20 on chr... 42 1.9
34emb|AL672070.12| Mouse DNA sequence from clone RP23-115A1 on chr... 42 1.9
35gb|AC108402.12| Mus musculus chromosome 3, clone RP24-141M5, com... 40 7.5
36gb|AC107634.8| Mus musculus chromosome 5, clone RP23-19G21, comp... 40 7.5
37gb|AY641472.1| Mus musculus truncated in juvenile spermatogonial... 40 7.5
38gb|AY316174.1| Rattus norvegicus Jsd-like sequence 40 7.5
39gb|AC164091.3| Mus musculus BAC clone RP23-97M20 from chromosome... 40 7.5
40gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 7.5
41gb|AC146236.3| Pan troglodytes BAC clone RP43-27L10 from 7, comp... 40 7.5
42gb|AC124421.4| Mus musculus BAC clone RP24-323H7 from chromosome... 40 7.5
43emb|Z50873.1|CEF17E5 Caenorhabditis elegans Cosmid F17E5, comple... 40 7.5
44gb|AC125085.4| Mus musculus BAC clone RP24-135G18 from chromosom... 40 7.5
45gb|AC131746.3| Mus musculus BAC clone RP23-62F20 from 3, complet... 40 7.5
46gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 7.5
47gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete ... 40 7.5
48gb|AC010547.9| Homo sapiens chromosome 16 clone RP11-510M2, comp... 40 7.5
49ref|NG_004677.1| Mus musculus truncated in juvenile spermatogoni... 40 7.5
50gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 40 7.5
51gb|AC153136.3| Mus musculus BAC clone RP24-191P11 from chromosom... 40 7.5
52gb|AC016725.5| Homo sapiens BAC clone RP11-341H1 from 2, complet... 40 7.5
53gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete... 40 7.5
54emb|BX537133.3| Zebrafish DNA sequence from clone DKEY-90M5 in l... 40 7.5
55gb|AC102858.11| Mus musculus chromosome 5, clone RP24-507F5, com... 40 7.5
56gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 40 7.5
57gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome 40 7.5
58gb|AY865621.1| Homo sapiens cyclin T2 (CCNT2) gene, complete cds 40 7.5
59dbj|AB004805.1| Garlic common latent virus RNA for coat protein ... 40 7.5 
>dbj|AK072971.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148G18, full
           insert sequence
          Length = 1356

 Score =  440 bits (222), Expect = e-120
 Identities = 454/530 (85%), Gaps = 1/530 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   tggtcggcaacgtattcagcagcgtcgcctccagctacgacgtcatgaacgacctcatga 63
           ||||||| ||||| |||||||||||||||||||| |||||  |||||||||| || ||||
Sbjct: 337 tggtcggtaacgtcttcagcagcgtcgcctccagttacgatctcatgaacgatcttatga 396

                                                                       
Query: 64  gcgctgggctgcacaggctctggnaaggacaggctgatttcaaagctgaatccttttcct 123
           ||| ||| || || ||| | ||| ||||||||||| || |||||||| ||||||||||||
Sbjct: 397 gcgttggactacataggttgtgg-aaggacaggctcatctcaaagcttaatccttttcct 455

                                                                       
Query: 124 ggtatgaagcacctggacgtggccggtgggacaggggatgttgcattccgtgtagtggaa 183
           || |||||||| || || ||||| ||||| |||||||||||||| |||||||   | || 
Sbjct: 456 gggatgaagcatctagatgtggctggtggaacaggggatgttgccttccgtgcgctcgag 515

                                                                       
Query: 184 agaattaagagtgtgagccacagagctatgcagggtactcttactgatatggaagaagac 243
           ||||| || || |||||||| ||||||||||||||||||||||||||||| |||||||| 
Sbjct: 516 agaatcaatagcgtgagccatagagctatgcagggtactcttactgatattgaagaagaa 575

                                                                       
Query: 244 actcacatttatgtttgcgacattaatccaaatatgctagaagttggaaagaagcgtgct 303
           || || || |||||||| ||||||||||||||||||||  | ||||||||||| ||||||
Sbjct: 576 acacaaatctatgtttgtgacattaatccaaatatgctgaatgttggaaagaaacgtgct 635

                                                                       
Query: 304 gctgaaaaaggctacaatgaagagaagtgccttagttgggtacagggagatgcagaagct 363
            | |||| ||| ||||| ||||   | |||||||| ||| |||| |||||||| ||||||
Sbjct: 636 tcagaaagaggatacaaagaaggccattgccttagctggatacaaggagatgctgaagct 695

                                                                       
Query: 364 ctttcttttgaggatgggtctatggatggctatactattgcattcgggatcagaaatgtt 423
           ||   |||||||||||| ||||||||||||||||||||||| || |||||||||||||| 
Sbjct: 696 ctgagttttgaggatggatctatggatggctatactattgcgtttgggatcagaaatgtg 755

                                                                       
Query: 424 acgcacattgagaaagctctatcagaagcttacagagttctaaagaaaggaggaaggttc 483
           || |||||||| |||||||||||||||||||| ||||| ||||||  ||| |||||||||
Sbjct: 756 acacacattgaaaaagctctatcagaagcttatagagtcctaaagcgagggggaaggttc 815

                                                             
Query: 484 ctgtgcttggagttgagccatgtggatgttccagtttttaaagacattta 533
           || |||||||| ||||| ||||||||||||||  |||||||||| |||||
Sbjct: 816 ctatgcttggaattgagtcatgtggatgttccgctttttaaagagattta 865
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>ref|NM_189505.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1821

 Score =  311 bits (157), Expect = 1e-81
 Identities = 304/353 (86%)
 Strand = Plus / Plus

                                                                        
Query: 103  tcaaagctgaatccttttcctggtatgaagcacctggacgtggccggtgggacaggggat 162
            |||||||| |||||||||||||| |||||||| || || ||||| ||||| |||||||||
Sbjct: 1255 tcaaagcttaatccttttcctgggatgaagcatctagatgtggctggtggaacaggggat 1314

                                                                        
Query: 163  gttgcattccgtgtagtggaaagaattaagagtgtgagccacagagctatgcagggtact 222
            ||||| |||||||   | || ||||| || || |||||||| ||||||||||||||||||
Sbjct: 1315 gttgccttccgtgcgctcgagagaatcaatagcgtgagccatagagctatgcagggtact 1374

                                                                        
Query: 223  cttactgatatggaagaagacactcacatttatgtttgcgacattaatccaaatatgcta 282
            ||||||||||| |||||||| || || || |||||||| |||||||||||||||||||| 
Sbjct: 1375 cttactgatattgaagaagaaacacaaatctatgtttgtgacattaatccaaatatgctg 1434

                                                                        
Query: 283  gaagttggaaagaagcgtgctgctgaaaaaggctacaatgaagagaagtgccttagttgg 342
             | ||||||||||| |||||| | |||| ||| ||||| ||||   | |||||||| |||
Sbjct: 1435 aatgttggaaagaaacgtgcttcagaaagaggatacaaagaaggccattgccttagctgg 1494

                                                                        
Query: 343  gtacagggagatgcagaagctctttcttttgaggatgggtctatggatggctatactatt 402
             |||| |||||||| ||||||||   |||||||||||| |||||||||||||||||||||
Sbjct: 1495 atacaaggagatgctgaagctctgagttttgaggatggatctatggatggctatactatt 1554

                                                                 
Query: 403  gcattcgggatcagaaatgttacgcacattgagaaagctctatcagaagctta 455
            || || |||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 1555 gcgtttgggatcagaaatgtgacacacattgaaaaagctctatcagaagctta 1607
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>gb|AY103819.1| Zea mays PCO095330 mRNA sequence
          Length = 1646

 Score =  176 bits (89), Expect = 5e-41
 Identities = 170/197 (86%), Gaps = 5/197 (2%)
 Strand = Plus / Plus

                                                                        
Query: 334  cttagttgggtacagggagatgcagaagctctttcttttgaggatgggtctatggatggc 393
            ||||| ||| |||| |||||||||||||||||   |||||||||||| ||||||||||| 
Sbjct: 901  cttagctggatacaaggagatgcagaagctctgagttttgaggatggatctatggatggt 960

                                                                        
Query: 394  tatactattgcattcgggatcagaaatgttacgcacattgagaaagctctatcagaagct 453
            || ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 961  tacactatcgcatttgggatcagaaatgtgacgcacattgagaaagctctatcagaagct 1020

                                                                        
Query: 454  tacag-----agttctaaagaaaggaggaaggttcctgtgcttggagttgagccatgtgg 508
            |||||      ||||||||| ||||  | |||||||| |||||||||||||| |||||||
Sbjct: 1021 tacagttgatggttctaaagcaagggtggaggttcctatgcttggagttgagtcatgtgg 1080

                             
Query: 509  atgttccagtttttaaa 525
            |||| ||  ||||||||
Sbjct: 1081 atgtccctatttttaaa 1097
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>gb|BT018102.1| Zea mays clone EL01N0553C07.c mRNA sequence
          Length = 1386

 Score =  167 bits (84), Expect = 5e-38
 Identities = 168/196 (85%), Gaps = 5/196 (2%)
 Strand = Plus / Plus

                                                                       
Query: 335 ttagttgggtacagggagatgcagaagctctttcttttgaggatgggtctatggatggct 394
           |||| ||| |||| |||||||||||||||||   |||||||||||| ||||||||||| |
Sbjct: 704 ttagctggatacaaggagatgcagaagctctgagttttgaggatggatctatggatggtt 763

                                                                       
Query: 395 atactattgcattcgggatcagaaatgttacgcacattgagaaagctctatcagaagctt 454
           | |||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 764 acactatcacatttgggatcagaaatgtgacgcacattgagaaagctctatcagaagctt 823

                                                                       
Query: 455 acag-----agttctaaagaaaggaggaaggttcctgtgcttggagttgagccatgtgga 509
           ||||      ||||||||| ||||  | |||||||| |||||||||||||| ||||||||
Sbjct: 824 acagttgatggttctaaagcaagggtggaggttcctatgcttggagttgagtcatgtgga 883

                           
Query: 510 tgttccagtttttaaa 525
           ||| ||  ||||||||
Sbjct: 884 tgtccctatttttaaa 899
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  145 bits (73), Expect = 2e-31
 Identities = 112/125 (89%)
 Strand = Plus / Minus

                                                                            
Query: 331      tgccttagttgggtacagggagatgcagaagctctttcttttgaggatgggtctatggat 390
                |||||||| ||| |||| |||||||| ||||||||   |||||||||||| |||||||||
Sbjct: 43153817 tgccttagctggatacaaggagatgctgaagctctgagttttgaggatggatctatggat 43153758

                                                                            
Query: 391      ggctatactattgcattcgggatcagaaatgttacgcacattgagaaagctctatcagaa 450
                |||||||||||||| || |||||||||||||| || |||||||| |||||||||||||||
Sbjct: 43153757 ggctatactattgcgtttgggatcagaaatgtgacacacattgaaaaagctctatcagaa 43153698

                     
Query: 451      gctta 455
                |||||
Sbjct: 43153697 gctta 43153693



 Score =  137 bits (69), Expect = 4e-29
 Identities = 129/149 (86%)
 Strand = Plus / Minus

                                                                            
Query: 155      caggggatgttgcattccgtgtagtggaaagaattaagagtgtgagccacagagctatgc 214
                ||||||||||||| |||||||   | || ||||| || || |||||||| ||||||||||
Sbjct: 43154088 caggggatgttgccttccgtgcgctcgagagaatcaatagcgtgagccatagagctatgc 43154029

                                                                            
Query: 215      agggtactcttactgatatggaagaagacactcacatttatgtttgcgacattaatccaa 274
                ||||||||||||||||||| |||||||| || || || |||||||| |||||||||||||
Sbjct: 43154028 agggtactcttactgatattgaagaagaaacacaaatctatgtttgtgacattaatccaa 43153969

                                             
Query: 275      atatgctagaagttggaaagaagcgtgct 303
                |||||||  | ||||||||||| ||||||
Sbjct: 43153968 atatgctgaatgttggaaagaaacgtgct 43153940



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                            
Query: 456      cagagttctaaagaaaggaggaaggttcctgtgcttggagttgagccatgtggatgttcc 515
                |||||| ||||||  ||| ||||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 43153507 cagagtcctaaagcgagggggaaggttcctatgcttggaattgagtcatgtggatgttcc 43153448

                            
Query: 516      agtttttaaaga 527
                  ||||||||||
Sbjct: 43153447 gctttttaaaga 43153436



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                            
Query: 4        tggtcggcaacgtattcagcagcgtcgcctccagctacgacgtcatgaacgacctcatga 63
                ||||||| ||||| |||||||||||||||||||| |||||  |||||||||| || ||||
Sbjct: 43154785 tggtcggtaacgtcttcagcagcgtcgcctccagttacgatctcatgaacgatcttatga 43154726

                   
Query: 64       gcg 66
                |||
Sbjct: 43154725 gcg 43154723



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                            
Query: 94       aggctgatttcaaagctgaatccttttcctggtatgaagcacctggacgtggccggtggg 153
                ||||| || |||||||| |||||||||||||| |||||||| || || ||||| ||||| 
Sbjct: 43154620 aggctcatctcaaagcttaatccttttcctgggatgaagcatctagatgtggctggtgga 43154561

                     
Query: 154      acagg 158
                |||||
Sbjct: 43154560 acagg 43154556
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>dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0020E09
          Length = 149195

 Score =  145 bits (73), Expect = 2e-31
 Identities = 112/125 (89%)
 Strand = Plus / Minus

                                                                         
Query: 331   tgccttagttgggtacagggagatgcagaagctctttcttttgaggatgggtctatggat 390
             |||||||| ||| |||| |||||||| ||||||||   |||||||||||| |||||||||
Sbjct: 41272 tgccttagctggatacaaggagatgctgaagctctgagttttgaggatggatctatggat 41213

                                                                         
Query: 391   ggctatactattgcattcgggatcagaaatgttacgcacattgagaaagctctatcagaa 450
             |||||||||||||| || |||||||||||||| || |||||||| |||||||||||||||
Sbjct: 41212 ggctatactattgcgtttgggatcagaaatgtgacacacattgaaaaagctctatcagaa 41153

                  
Query: 451   gctta 455
             |||||
Sbjct: 41152 gctta 41148



 Score =  137 bits (69), Expect = 4e-29
 Identities = 129/149 (86%)
 Strand = Plus / Minus

                                                                         
Query: 155   caggggatgttgcattccgtgtagtggaaagaattaagagtgtgagccacagagctatgc 214
             ||||||||||||| |||||||   | || ||||| || || |||||||| ||||||||||
Sbjct: 41543 caggggatgttgccttccgtgcgctcgagagaatcaatagcgtgagccatagagctatgc 41484

                                                                         
Query: 215   agggtactcttactgatatggaagaagacactcacatttatgtttgcgacattaatccaa 274
             ||||||||||||||||||| |||||||| || || || |||||||| |||||||||||||
Sbjct: 41483 agggtactcttactgatattgaagaagaaacacaaatctatgtttgtgacattaatccaa 41424

                                          
Query: 275   atatgctagaagttggaaagaagcgtgct 303
             |||||||  | ||||||||||| ||||||
Sbjct: 41423 atatgctgaatgttggaaagaaacgtgct 41395



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                         
Query: 456   cagagttctaaagaaaggaggaaggttcctgtgcttggagttgagccatgtggatgttcc 515
             |||||| ||||||  ||| ||||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 40962 cagagtcctaaagcgagggggaaggttcctatgcttggaattgagtcatgtggatgttcc 40903

                         
Query: 516   agtttttaaaga 527
               ||||||||||
Sbjct: 40902 gctttttaaaga 40891



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                         
Query: 4     tggtcggcaacgtattcagcagcgtcgcctccagctacgacgtcatgaacgacctcatga 63
             ||||||| ||||| |||||||||||||||||||| |||||  |||||||||| || ||||
Sbjct: 42240 tggtcggtaacgtcttcagcagcgtcgcctccagttacgatctcatgaacgatcttatga 42181

                
Query: 64    gcg 66
             |||
Sbjct: 42180 gcg 42178



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                         
Query: 94    aggctgatttcaaagctgaatccttttcctggtatgaagcacctggacgtggccggtggg 153
             ||||| || |||||||| |||||||||||||| |||||||| || || ||||| ||||| 
Sbjct: 42075 aggctcatctcaaagcttaatccttttcctgggatgaagcatctagatgtggctggtgga 42016

                  
Query: 154   acagg 158
             |||||
Sbjct: 42015 acagg 42011
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>gb|BT017134.1| Zea mays clone EL01N0365H03.c mRNA sequence
          Length = 1601

 Score =  143 bits (72), Expect = 7e-31
 Identities = 111/124 (89%)
 Strand = Plus / Plus

                                                                       
Query: 335 ttagttgggtacagggagatgcagaagctctttcttttgaggatgggtctatggatggct 394
           |||| ||| |||| |||||||||||||||||   |||||||||||| ||||||||||| |
Sbjct: 797 ttagctggatacaaggagatgcagaagctctgagttttgaggatggatctatggatggtt 856

                                                                       
Query: 395 atactattgcattcgggatcagaaatgttacgcacattgagaaagctctatcagaagctt 454
           | |||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 857 acactatcacatttgggatcagaaatgtgacgcacattgagaaagctctatcagaagctt 916

               
Query: 455 acag 458
           ||||
Sbjct: 917 acag 920



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                        
Query: 460  gttctaaagaaaggaggaaggttcctgtgcttggagttgagccatgtggatgttccagtt 519
            ||||||||| ||||  | |||||||| |||||||||||||| ||||||||||| ||  ||
Sbjct: 1149 gttctaaagcaagggtggaggttcctatgcttggagttgagtcatgtggatgtccctatt 1208

                  
Query: 520  tttaaa 525
            ||||||
Sbjct: 1209 tttaaa 1214
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>gb|AC135414.31| Medicago truncatula clone mth2-8n20, complete sequence
          Length = 127018

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                        
Query: 385  atggatggctatactattgcattcgggatcagaaatgttacgcacattgagaaagctcta 444
            |||||||| || ||||||||||| ||||| || |||||||| ||||| ||||||| ||||
Sbjct: 8634 atggatggttacactattgcatttgggataaggaatgttacacacatcgagaaagttcta 8575



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 110  tgaatccttttcctggtatgaagcacctggacgtggccggtgg 152
            |||||||||||||||| |||||||| || || |||||||||||
Sbjct: 9877 tgaatccttttcctggaatgaagcatcttgatgtggccggtgg 9835
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>gb|AC148304.3| Medicago truncatula clone mth2-21b19, complete sequence
          Length = 110520

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                         
Query: 385   atggatggctatactattgcattcgggatcagaaatgttacgcacattgagaaagctcta 444
             |||||||| || ||||||||||| ||||| || |||||||| ||||| ||||||| ||||
Sbjct: 86266 atggatggttacactattgcatttgggataaggaatgttacacacatcgagaaagttcta 86207



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 110   tgaatccttttcctggtatgaagcacctggacgtggccggtgg 152
             |||||||||||||||| |||||||| || || |||||||||||
Sbjct: 87509 tgaatccttttcctggaatgaagcatcttgatgtggccggtgg 87467
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>gb|AC147009.5| Medicago truncatula clone mth2-139j3, complete sequence
          Length = 125303

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                          
Query: 385    atggatggctatactattgcattcgggatcagaaatgttacgcacattgagaaagctcta 444
              |||||||| || ||||||||||| ||||| || |||||||| ||||| ||||||| ||||
Sbjct: 118383 atggatggttacactattgcatttgggataaggaatgttacacacatcgagaaagttcta 118442



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                         
Query: 110    tgaatccttttcctggtatgaagcacctggacgtggccggtgg 152
              |||||||||||||||| |||||||| || || |||||||||||
Sbjct: 117140 tgaatccttttcctggaatgaagcatcttgatgtggccggtgg 117182
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                   
Query: 26     cgtcgcctccagctacgacgtcatgaacgacctcatg 62
              ||||||| || ||||||| ||||||||||||||||||
Sbjct: 664336 cgtcgccgcccgctacgatgtcatgaacgacctcatg 664300
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>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16
          Length = 346287

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 27     gtcgcctccagctacgacgtcatgaacgacctcatg 62
              ||||||||  ||||||||||||||||||| ||||||
Sbjct: 239363 gtcgcctcgcgctacgacgtcatgaacgatctcatg 239328
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>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14
          Length = 346259

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 27     gtcgcctccagctacgacgtcatgaacgacctcatg 62
              ||||||||  ||||||||||||||||||| ||||||
Sbjct: 158403 gtcgcctcgcgctacgacgtcatgaacgatctcatg 158368
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>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12
          Length = 346359

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 27     gtcgcctccagctacgacgtcatgaacgacctcatg 62
              ||||||||  ||||||||||||||||||| ||||||
Sbjct: 160069 gtcgcctcgcgctacgacgtcatgaacgatctcatg 160104
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 37      gctacgacgtcatgaacgacctcatg 62
               ||||||||||||||||||| ||||||
Sbjct: 1800887 gctacgacgtcatgaacgatctcatg 1800862
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 294     gaagcgtgctgctgaaaaaggc 315
               ||||||||||||||||||||||
Sbjct: 1328457 gaagcgtgctgctgaaaaaggc 1328478
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 294     gaagcgtgctgctgaaaaaggc 315
               ||||||||||||||||||||||
Sbjct: 1376154 gaagcgtgctgctgaaaaaggc 1376175
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 294     gaagcgtgctgctgaaaaaggc 315
               ||||||||||||||||||||||
Sbjct: 1339242 gaagcgtgctgctgaaaaaggc 1339263
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 294     gaagcgtgctgctgaaaaaggc 315
               ||||||||||||||||||||||
Sbjct: 1235468 gaagcgtgctgctgaaaaaggc 1235489
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 294     gaagcgtgctgctgaaaaaggc 315
               ||||||||||||||||||||||
Sbjct: 1315438 gaagcgtgctgctgaaaaaggc 1315459
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 294     gaagcgtgctgctgaaaaaggc 315
               ||||||||||||||||||||||
Sbjct: 1299962 gaagcgtgctgctgaaaaaggc 1299983
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 294     gaagcgtgctgctgaaaaaggc 315
               ||||||||||||||||||||||
Sbjct: 1299825 gaagcgtgctgctgaaaaaggc 1299846
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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 294     gaagcgtgctgctgaaaaaggc 315
               ||||||||||||||||||||||
Sbjct: 1265099 gaagcgtgctgctgaaaaaggc 1265120
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>gb|AC108399.11| Mus musculus chromosome 19, clone RP24-375O7, complete sequence
          Length = 180312

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                          
Query: 431   ttgagaaagctctatcagaagcttacaga 459
             |||||||||||||| ||||||||||||||
Sbjct: 39201 ttgagaaagctcta-cagaagcttacaga 39174
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>gb|AY422186.1| Homo sapiens GABA(A) receptor-associated protein-like 2 (GABARAPL2)
           pseudogene, complete sequence
          Length = 786

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 106 aagctgaatccttttcctggt 126
           |||||||||||||||||||||
Sbjct: 117 aagctgaatccttttcctggt 97
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>gb|AE006028.1| Caulobacter crescentus CB15 section 354 of 359 of the complete genome
          Length = 10598

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 38   ctacgacgtcatgaacgacctcatgagcg 66
            ||||||| ||||||||||||| |||||||
Sbjct: 7443 ctacgacatcatgaacgacctgatgagcg 7471
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>gb|AC100811.2| Homo sapiens chromosome 8, clone CTD-2532M24, complete sequence
          Length = 194254

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 106   aagctgaatccttttcctggt 126
             |||||||||||||||||||||
Sbjct: 30069 aagctgaatccttttcctggt 30049
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>gb|AC107953.3| Homo sapiens chromosome 8, clone RP11-278I4, complete sequence
          Length = 147414

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 106   aagctgaatccttttcctggt 126
             |||||||||||||||||||||
Sbjct: 43889 aagctgaatccttttcctggt 43909
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>gb|AC151346.2| Xenopus tropicalis clone ISB-384J24, complete sequence
          Length = 81038

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 235  gaagaagacactcacatttat 255
            |||||||||||||||||||||
Sbjct: 7942 gaagaagacactcacatttat 7962
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>gb|AC151338.2| Xenopus tropicalis clone ISB-347F7, complete sequence
          Length = 73907

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 235   gaagaagacactcacatttat 255
             |||||||||||||||||||||
Sbjct: 38964 gaagaagacactcacatttat 38944
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>gb|AC171018.2| Gallus gallus BAC clone CH261-11F14 from chromosome ul, complete sequence
          Length = 216886

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 180    ggaaagaattaagagtgtgag 200
              |||||||||||||||||||||
Sbjct: 195124 ggaaagaattaagagtgtgag 195144
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>emb|AL591127.12| Mouse DNA sequence from clone RP23-370H21 on chromosome 2, complete
             sequence
          Length = 125816

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 238   gaagacactcacatttatgtt 258
             |||||||||||||||||||||
Sbjct: 75389 gaagacactcacatttatgtt 75369
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>emb|AL928791.10| Mouse DNA sequence from clone RP23-65N20 on chromosome 2, complete
             sequence
          Length = 210148

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 428   acattgagaaagctctatcag 448
             |||||||||||||||||||||
Sbjct: 88347 acattgagaaagctctatcag 88327
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>emb|AL672070.12| Mouse DNA sequence from clone RP23-115A1 on chromosome 9, complete
             sequence
          Length = 197912

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 181   gaaagaattaagagtgtgagccaca 205
             |||||||||||||||| ||||||||
Sbjct: 98179 gaaagaattaagagtgagagccaca 98203
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>gb|AC108402.12| Mus musculus chromosome 3, clone RP24-141M5, complete sequence
          Length = 125057

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 455    acagagttctaaagaaagga 474
              ||||||||||||||||||||
Sbjct: 100332 acagagttctaaagaaagga 100351
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>gb|AC107634.8| Mus musculus chromosome 5, clone RP23-19G21, complete sequence
          Length = 201345

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 452    cttacagagttctaaagaaa 471
              ||||||||||||||||||||
Sbjct: 149642 cttacagagttctaaagaaa 149661
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>gb|AY641472.1| Mus musculus truncated in juvenile spermatogonial depletion
            (Utp14B-ps) pseudogene, complete sequence
          Length = 3441

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 455  acagagttctaaagaaagga 474
            ||||||||||||||||||||
Sbjct: 1068 acagagttctaaagaaagga 1087
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>gb|AY316174.1| Rattus norvegicus Jsd-like sequence
          Length = 2283

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 455 acagagttctaaagaaagga 474
           ||||||||||||||||||||
Sbjct: 749 acagagttctaaagaaagga 768
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>gb|AC164091.3| Mus musculus BAC clone RP23-97M20 from chromosome 3, complete sequence
          Length = 218807

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 449    aagcttacagagttctaaag 468
              ||||||||||||||||||||
Sbjct: 187581 aagcttacagagttctaaag 187562
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                              
Query: 39     tacgacgtcatgaacgacctcatgagcgctgggctgcacaggctctgg 86
              |||||||| ||||||||||| |||  || |||| ||||| ||||||||
Sbjct: 395977 tacgacgtgatgaacgacctgatgtccggtgggatgcaccggctctgg 396024
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>gb|AC146236.3| Pan troglodytes BAC clone RP43-27L10 from 7, complete sequence
          Length = 184346

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     acaggctgatttcaaagctg 111
              ||||||||||||||||||||
Sbjct: 114611 acaggctgatttcaaagctg 114592
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>gb|AC124421.4| Mus musculus BAC clone RP24-323H7 from chromosome 10, complete sequence
          Length = 187081

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   tgagaaagctctatcagaag 451
             ||||||||||||||||||||
Sbjct: 40697 tgagaaagctctatcagaag 40716
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>emb|Z50873.1|CEF17E5 Caenorhabditis elegans Cosmid F17E5, complete sequence
          Length = 30549

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 225  tactgatatggaagaagaca 244
            ||||||||||||||||||||
Sbjct: 1278 tactgatatggaagaagaca 1297
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>gb|AC125085.4| Mus musculus BAC clone RP24-135G18 from chromosome 8, complete sequence
          Length = 168721

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    aaggacaggctgatttcaaa 107
             ||||||||||||||||||||
Sbjct: 88994 aaggacaggctgatttcaaa 89013
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>gb|AC131746.3| Mus musculus BAC clone RP23-62F20 from 3, complete sequence
          Length = 201620

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 449    aagcttacagagttctaaag 468
              ||||||||||||||||||||
Sbjct: 120958 aagcttacagagttctaaag 120977
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 39      tacgacgtcatgaacgacctcatgagcg 66
               ||||| |||||||||||| |||||||||
Sbjct: 4315157 tacgatgtcatgaacgacgtcatgagcg 4315130
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>gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete genome
          Length = 859006

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 430    attgagaaagctctatcagaagcttacagagt 461
              ||||||| | ||||| ||||||||||||||||
Sbjct: 836793 attgagagatctctaacagaagcttacagagt 836824
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>gb|AC010547.9| Homo sapiens chromosome 16 clone RP11-510M2, complete sequence
          Length = 183228

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   agagtgtgagccacagagct 210
             ||||||||||||||||||||
Sbjct: 38852 agagtgtgagccacagagct 38871
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>ref|NG_004677.1| Mus musculus truncated in juvenile spermatogonial depletion
            pseudogene (Utp14B-ps) on chromosome 3
          Length = 3441

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 455  acagagttctaaagaaagga 474
            ||||||||||||||||||||
Sbjct: 1068 acagagttctaaagaaagga 1087
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 354     tgcagaagctctttcttttg 373
               ||||||||||||||||||||
Sbjct: 1228502 tgcagaagctctttcttttg 1228521
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>gb|AC153136.3| Mus musculus BAC clone RP24-191P11 from chromosome 10, complete
             sequence
          Length = 199200

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   tgagaaagctctatcagaag 451
             ||||||||||||||||||||
Sbjct: 50085 tgagaaagctctatcagaag 50066
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>gb|AC016725.5| Homo sapiens BAC clone RP11-341H1 from 2, complete sequence
          Length = 164180

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    tttcaaagctgaatcctttt 120
              ||||||||||||||||||||
Sbjct: 114600 tttcaaagctgaatcctttt 114581
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>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome
          Length = 1308759

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 436    aaagctctatcagaagcttacagagttctaaa 467
              |||||| ||||||||||||| |||||| ||||
Sbjct: 396821 aaagctttatcagaagcttatagagttttaaa 396790
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>emb|BX537133.3| Zebrafish DNA sequence from clone DKEY-90M5 in linkage group 20,
             complete sequence
          Length = 249791

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 510   tgttccagtttttaaagaca 529
             ||||||||||||||||||||
Sbjct: 44521 tgttccagtttttaaagaca 44502
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>gb|AC102858.11| Mus musculus chromosome 5, clone RP24-507F5, complete sequence
          Length = 176211

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   gtgggacaggggatgttgca 168
             ||||||||||||||||||||
Sbjct: 53287 gtgggacaggggatgttgca 53306
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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 354     tgcagaagctctttcttttg 373
               ||||||||||||||||||||
Sbjct: 2996084 tgcagaagctctttcttttg 2996065
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>gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome
          Length = 1197687

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                          
Query: 37     gctacgacgtcatgaacgacctcatgagcgctgggctgcacagg 80
              |||| ||| ||||||| ||||||||||||  |||| ||||||||
Sbjct: 906091 gctatgacctcatgaatgacctcatgagctttgggttgcacagg 906134
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>gb|AY865621.1| Homo sapiens cyclin T2 (CCNT2) gene, complete cds
          Length = 42159

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   tttcaaagctgaatcctttt 120
             ||||||||||||||||||||
Sbjct: 35677 tttcaaagctgaatcctttt 35658
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>dbj|AB004805.1| Garlic common latent virus RNA for coat protein and nucleic acid
           binding protein, complete cds, clone GHAV
          Length = 1441

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  gatttcaaagctgaatcctt 118
           ||||||||||||||||||||
Sbjct: 405 gatttcaaagctgaatcctt 424


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,455,648
Number of Sequences: 3902068
Number of extensions: 5455648
Number of successful extensions: 134876
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 134531
Number of HSP's gapped (non-prelim): 341
length of query: 554
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 531
effective length of database: 17,143,297,704
effective search space: 9103091080824
effective search space used: 9103091080824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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