>ref|XM_463468.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2634

 Score =  105 bits (53), Expect = 8e-20
 Identities = 77/85 (90%)
 Strand = Plus / Plus

                                                                        
Query: 143  aacagccagggtcaaatatgttagaggagtcgctgtgccgttaggaaaaactaagtctct 202
            |||| ||| |||||||||||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct: 2025 aacaaccaaggtcaaatatgtcagaggagttgctgtgccattaggaaaaacaaagtctct 2084

                                     
Query: 203  tgttgagagatttgaaaagagagag 227
            |||||||||||  ||||||||||||
Sbjct: 2085 tgttgagagatgggaaaagagagag 2109

>dbj|AK100949.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139I08, full
            insert sequence
          Length = 2992

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 80/90 (88%)
 Strand = Plus / Plus

                                                                        
Query: 138  acaggaacagccagggtcaaatatgttagaggagtcgctgtgccgttaggaaaaactaag 197
            |||| |||| ||| |||||||||||| |||||||| |||||||| |||||||||||  ||
Sbjct: 1958 acagaaacaaccaaggtcaaatatgtcagaggagttgctgtgccattaggaaaaacatag 2017

                                          
Query: 198  tctcttgttgagagatttgaaaagagagag 227
            ||||||||||||||||  ||||||||||||
Sbjct: 2018 tctcttgttgagagatgggaaaagagagag 2047

>gb|AY105613.1| Zea mays PCO122156 mRNA sequence
          Length = 1111

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 99/116 (85%)
 Strand = Plus / Plus

                                                                       
Query: 119 tgaatcaccgtgctcgacgacaggaacagccagggtcaaatatgttagaggagtcgctgt 178
           ||||||||| ||||| || ||||  || |||| ||||||||||||||||||||| |||||
Sbjct: 22  tgaatcaccatgctcaacaacagagactgccaaggtcaaatatgttagaggagttgctgt 81

                                                                   
Query: 179 gccgttaggaaaaactaagtctcttgttgagagatttgaaaagagagagagttcta 234
           |||  | || ||||| |||||||||||||||||||  ||||| ||||||| |||||
Sbjct: 82  gccactggggaaaacaaagtctcttgttgagagatgggaaaaaagagagacttcta 137

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                      
Query: 174      gctgtgccgttaggaaaaactaagtctcttgttgagagatttgaaaagagagag 227
                |||||||| ||||||||||| |||||||||||||||||||  ||||||||||||
Sbjct: 33048852 gctgtgccattaggaaaaacaaagtctcttgttgagagatgggaaaagagagag 33048905

>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0010B10
          Length = 155263

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                    
Query: 174    gctgtgccgttaggaaaaactaagtctcttgttgagagatttgaaaagagagag 227
              |||||||| ||||||||||| |||||||||||||||||||  ||||||||||||
Sbjct: 115080 gctgtgccattaggaaaaacaaagtctcttgttgagagatgggaaaagagagag 115133

>gb|AC112158.4| Mus musculus BAC clone RP24-116K14 from chromosome 15, complete
             sequence
          Length = 175171

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 219   aagagagagagttctacttcta 240
             ||||||||||||||||||||||
Sbjct: 89933 aagagagagagttctacttcta 89954

>emb|BX469913.15| Zebrafish DNA sequence from clone DKEY-237G5 in linkage group 20,
             complete sequence
          Length = 196927

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 28    ataaaagagaaattagacaaatagcagaaa 57
             ||||||||||||||||||||  ||||||||
Sbjct: 75772 ataaaagagaaattagacaatgagcagaaa 75743

>gb|AC155307.2| Mus musculus BAC clone RP24-147F17 from 15, complete sequence
          Length = 190527

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 219    aagagagagagttctacttcta 240
              ||||||||||||||||||||||
Sbjct: 139811 aagagagagagttctacttcta 139790

>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
              genome
          Length = 3570858

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 122    atcaccgtgctcgacgacagg 142
              |||||||||||||||||||||
Sbjct: 281783 atcaccgtgctcgacgacagg 281763

>gb|AC112265.5| Mus musculus BAC clone RP23-421N20 from 10, complete sequence
          Length = 203204

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 31    aaagagaaattagacaaatag 51
             |||||||||||||||||||||
Sbjct: 85839 aaagagaaattagacaaatag 85859

>ref|XM_861618.1| PREDICTED: Canis familiaris similar to ribosomal protein P1 isoform
           2, transcript variant 4 (LOC478356), mRNA
          Length = 521

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 2   caagaaagaagaatctgagg 21
           ||||||||||||||||||||
Sbjct: 412 caagaaagaagaatctgagg 431

>ref|XM_535529.2| PREDICTED: Canis familiaris similar to ribosomal protein P1 isoform
           2, transcript variant 1 (LOC478356), mRNA
          Length = 534

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 2   caagaaagaagaatctgagg 21
           ||||||||||||||||||||
Sbjct: 412 caagaaagaagaatctgagg 431

>ref|XM_847914.1| PREDICTED: Canis familiaris similar to ribosomal protein P1 isoform
           2, transcript variant 2 (LOC478356), mRNA
          Length = 509

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 2   caagaaagaagaatctgagg 21
           ||||||||||||||||||||
Sbjct: 412 caagaaagaagaatctgagg 431

>ref|XM_861578.1| PREDICTED: Canis familiaris similar to ribosomal protein P1 isoform
           2, transcript variant 3 (LOC478356), mRNA
          Length = 315

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 2   caagaaagaagaatctgagg 21
           ||||||||||||||||||||
Sbjct: 213 caagaaagaagaatctgagg 232

>emb|AJ719740.1| Gallus gallus mRNA for hypothetical protein, clone 5o22
          Length = 2098

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   agaaaagatggacagaatag 72
            ||||||||||||||||||||
Sbjct: 1314 agaaaagatggacagaatag 1333

>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 25      ctgataaaagagaaattaga 44
               ||||||||||||||||||||
Sbjct: 1453685 ctgataaaagagaaattaga 1453704

>gb|AC092018.2| Homo sapiens chromosome 1 clone RP11-543G21, complete sequence
          Length = 173135

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     aaaagagaaattagacaaat 49
              ||||||||||||||||||||
Sbjct: 142694 aaaagagaaattagacaaat 142713

>gb|AC008289.5|AC008289 Drosophila melanogaster, chromosome 2R, region 57B-57B, BAC clone
            BACR04E05, complete sequence
          Length = 163012

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  gagagatttgaaaagagaga 226
            ||||||||||||||||||||
Sbjct: 2084 gagagatttgaaaagagaga 2103

>gb|AC007888.7|AC007888 Drosophila melanogaster, chromosome 2R, region 57B6-57B13, BAC clone
             BACR10P11, complete sequence
          Length = 164035

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   gagagatttgaaaagagaga 226
             ||||||||||||||||||||
Sbjct: 74865 gagagatttgaaaagagaga 74884

>ref|NM_001012848.1| Gallus gallus similar to hypothetical protein FLJ20533 (LOC420188),
            mRNA
          Length = 2098

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   agaaaagatggacagaatag 72
            ||||||||||||||||||||
Sbjct: 1314 agaaaagatggacagaatag 1333

>gb|AC102338.10| Mus musculus chromosome 3, clone RP24-559D1, complete sequence
          Length = 176047

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 206   tgagagatttgaaaagagagagag 229
             ||||||||||| ||||||||||||
Sbjct: 41237 tgagagatttgcaaagagagagag 41214

>gb|AE003452.5| Drosophila melanogaster chromosome 2R, section 60 of 73 of the complete
              sequence
          Length = 303438

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 207    gagagatttgaaaagagaga 226
              ||||||||||||||||||||
Sbjct: 176403 gagagatttgaaaagagaga 176384


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,627,604
Number of Sequences: 3902068
Number of extensions: 3627604
Number of successful extensions: 71177
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71099
Number of HSP's gapped (non-prelim): 78
length of query: 297
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 275
effective length of database: 17,147,199,772
effective search space: 4715479937300
effective search space used: 4715479937300
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)