| Clone Name | bags31i07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY052154.1| Triticum aestivum porphobilinogen deaminase mRNA, partial cds Length = 1220 Score = 482 bits (243), Expect = e-133 Identities = 284/295 (96%), Gaps = 2/295 (0%) Strand = Plus / Plus Query: 1 gcagttgctcaaggcgctattggaatagcttgcaggcagcaatgatgataaaatgatgga 60 ||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 579 gcagtcgctcaaggcgctattggaataacttgcagg-agcaatgatgataaaatgatgga 637 Query: 61 gtatctatcctctttgaatcatgaagataccagtattagctgttgcatgtgaaagagaat 120 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 638 gtatctgtcctctttgaatcatgaagataccag-attagctgttgcatgtgaaagagaat 696 Query: 121 tcttgtctgttcttgatggtaactgtcgaactccaattgcggcatatgcttatcgtgaca 180 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 697 tcttgtctgttcttgatggtaactgccgaactccaattgcggcatatgcttatcgtgaca 756 Query: 181 aggatgggaactgttcattccgggggctattggcttcaccagatggctctatagtatacg 240 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 757 aggatgggaactgctcattccgggggctattggcttcaccagatggctctatagtatacg 816 Query: 241 agacatcaagaagtggaacatattcttttgatgacatggtcgcgataggccaaga 295 |||| ||||| ||||||||||||||||||||||||||||||||| |||| ||||| Sbjct: 817 agacgtcaaggagtggaacatattcttttgatgacatggtcgcgttaggtcaaga 871
>ref|XM_464263.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1466 Score = 280 bits (141), Expect = 2e-72 Identities = 230/257 (89%), Gaps = 2/257 (0%) Strand = Plus / Plus Query: 1 gcagttgctcaaggcgctattggaatagcttgcaggcagcaatgatgataaaatgatgga 60 |||||||||||||| |||||||||||||||||||| |||| |||||| | ||||||| | Sbjct: 808 gcagttgctcaaggtgctattggaatagcttgcaga-agcagtgatgacacaatgatgaa 866 Query: 61 gtatctatcctctttgaatcatgaagataccagtattagctgttgcatgtgaaagagaat 120 || | ||||| ||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 867 ttacttgtcctcattgaaccatgaagataccag-attagctgttgcatgtgaaagagaat 925 Query: 121 tcttgtctgttcttgatggtaactgtcgaactccaattgcggcatatgcttatcgtgaca 180 ||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||| Sbjct: 926 tcttgtcagttcttgatggcaactgccgaactccaattgcggcatatgcttctcgtgaca 985 Query: 181 aggatgggaactgttcattccgggggctattggcttcaccagatggctctatagtatacg 240 |||||||||| ||||||||||| ||||||||||||||||| ||||| |||| |||||| | Sbjct: 986 aggatgggaattgttcattccgagggctattggcttcacctgatggatctacagtatatg 1045 Query: 241 agacatcaagaagtgga 257 |||| || |||| |||| Sbjct: 1046 agacttcgagaactgga 1062
>ref|XM_464262.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1416 Score = 280 bits (141), Expect = 2e-72 Identities = 230/257 (89%), Gaps = 2/257 (0%) Strand = Plus / Plus Query: 1 gcagttgctcaaggcgctattggaatagcttgcaggcagcaatgatgataaaatgatgga 60 |||||||||||||| |||||||||||||||||||| |||| |||||| | ||||||| | Sbjct: 775 gcagttgctcaaggtgctattggaatagcttgcaga-agcagtgatgacacaatgatgaa 833 Query: 61 gtatctatcctctttgaatcatgaagataccagtattagctgttgcatgtgaaagagaat 120 || | ||||| ||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 834 ttacttgtcctcattgaaccatgaagataccag-attagctgttgcatgtgaaagagaat 892 Query: 121 tcttgtctgttcttgatggtaactgtcgaactccaattgcggcatatgcttatcgtgaca 180 ||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||| Sbjct: 893 tcttgtcagttcttgatggcaactgccgaactccaattgcggcatatgcttctcgtgaca 952 Query: 181 aggatgggaactgttcattccgggggctattggcttcaccagatggctctatagtatacg 240 |||||||||| ||||||||||| ||||||||||||||||| ||||| |||| |||||| | Sbjct: 953 aggatgggaattgttcattccgagggctattggcttcacctgatggatctacagtatatg 1012 Query: 241 agacatcaagaagtgga 257 |||| || |||| |||| Sbjct: 1013 agacttcgagaactgga 1029
>dbj|AK102265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088M20, full insert sequence Length = 1466 Score = 280 bits (141), Expect = 2e-72 Identities = 230/257 (89%), Gaps = 2/257 (0%) Strand = Plus / Plus Query: 1 gcagttgctcaaggcgctattggaatagcttgcaggcagcaatgatgataaaatgatgga 60 |||||||||||||| |||||||||||||||||||| |||| |||||| | ||||||| | Sbjct: 808 gcagttgctcaaggtgctattggaatagcttgcaga-agcagtgatgacacaatgatgaa 866 Query: 61 gtatctatcctctttgaatcatgaagataccagtattagctgttgcatgtgaaagagaat 120 || | ||||| ||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 867 ttacttgtcctcattgaaccatgaagataccag-attagctgttgcatgtgaaagagaat 925 Query: 121 tcttgtctgttcttgatggtaactgtcgaactccaattgcggcatatgcttatcgtgaca 180 ||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||| Sbjct: 926 tcttgtcagttcttgatggcaactgccgaactccaattgcggcatatgcttctcgtgaca 985 Query: 181 aggatgggaactgttcattccgggggctattggcttcaccagatggctctatagtatacg 240 |||||||||| ||||||||||| ||||||||||||||||| ||||| |||| |||||| | Sbjct: 986 aggatgggaattgttcattccgagggctattggcttcacctgatggatctacagtatatg 1045 Query: 241 agacatcaagaagtgga 257 |||| || |||| |||| Sbjct: 1046 agacttcgagaactgga 1062
>dbj|AK060914.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G03, full insert sequence Length = 1416 Score = 280 bits (141), Expect = 2e-72 Identities = 230/257 (89%), Gaps = 2/257 (0%) Strand = Plus / Plus Query: 1 gcagttgctcaaggcgctattggaatagcttgcaggcagcaatgatgataaaatgatgga 60 |||||||||||||| |||||||||||||||||||| |||| |||||| | ||||||| | Sbjct: 775 gcagttgctcaaggtgctattggaatagcttgcaga-agcagtgatgacacaatgatgaa 833 Query: 61 gtatctatcctctttgaatcatgaagataccagtattagctgttgcatgtgaaagagaat 120 || | ||||| ||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 834 ttacttgtcctcattgaaccatgaagataccag-attagctgttgcatgtgaaagagaat 892 Query: 121 tcttgtctgttcttgatggtaactgtcgaactccaattgcggcatatgcttatcgtgaca 180 ||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||| Sbjct: 893 tcttgtcagttcttgatggcaactgccgaactccaattgcggcatatgcttctcgtgaca 952 Query: 181 aggatgggaactgttcattccgggggctattggcttcaccagatggctctatagtatacg 240 |||||||||| ||||||||||| ||||||||||||||||| ||||| |||| |||||| | Sbjct: 953 aggatgggaattgttcattccgagggctattggcttcacctgatggatctacagtatatg 1012 Query: 241 agacatcaagaagtgga 257 |||| || |||| |||| Sbjct: 1013 agacttcgagaactgga 1029
>gb|AY107718.1| Zea mays PCO070684 mRNA sequence Length = 1003 Score = 272 bits (137), Expect = 6e-70 Identities = 259/297 (87%), Gaps = 2/297 (0%) Strand = Plus / Plus Query: 1 gcagttgctcaaggcgctattggaatagcttgcaggcagcaatgatgataaaatgatgga 60 |||||||| ||||| |||||||||||||||||| | ||||||||||| ||||||||||| Sbjct: 380 gcagttgcccaaggtgctattggaatagcttgccga-agcaatgatgacaaaatgatgga 438 Query: 61 gtatctatcctctttgaatcatgaagataccagtattagctgttgcatgtgaaagagaat 120 ||||||||| | ||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 439 gtatctatcagcgttgaaccatgaagataccag-attagctgttgcatgtgaaagagaat 497 Query: 121 tcttgtctgttcttgatggtaactgtcgaactccaattgcggcatatgcttatcgtgaca 180 | ||| | ||||||||||||||||| |||||||||||||| || |||||||| ||||||| Sbjct: 498 ttttggcagttcttgatggtaactgccgaactccaattgcagcctatgcttaccgtgaca 557 Query: 181 aggatgggaactgttcattccgggggctattggcttcaccagatggctctatagtatacg 240 | |||||||| || |||||||| || |||||| |||| |||||||| |||| ||||| | Sbjct: 558 atgatgggaattgctcattccgcggtctattgtcttccccagatggatctaaagtatttg 617 Query: 241 agacatcaagaagtggaacatattcttttgatgacatggtcgcgataggccaagatg 297 ||||| ||||||||||| | || |||||||| |||||||| | ||| ||| |||||| Sbjct: 618 agacaacaagaagtggaccgtactcttttgacgacatggttgagatgggcaaagatg 674
>emb|Y12809.1|ZMY12809 Zea mays mRNA for putative porphobilinogen deaminase Length = 865 Score = 240 bits (121), Expect = 2e-60 Identities = 256/297 (86%), Gaps = 3/297 (1%) Strand = Plus / Minus Query: 1 gcagttgctcaaggcgctattggaatagcttgcaggcagcaatgatgataaaatgatgga 60 |||||||| ||||| |||||||||||| ||||| | ||||||||||| ||||||||||| Sbjct: 574 gcagttgcccaaggtgctattggaataccttgccga-agcaatgatgacaaaatgatgga 516 Query: 61 gtatctatcctctttgaatcatgaagataccagtattagctgttgcatgtgaaagagaat 120 ||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct: 515 gtatctatcagcgttgaaccatgaagataccac-attagctgttgcatgtgaaagagaat 457 Query: 121 tcttgtctgttcttgatggtaactgtcgaactccaattgcggcatatgcttatcgtgaca 180 | ||| | ||||||||||||||||| |||||||||||||| || |||||||| ||||||| Sbjct: 456 t-ttggcagttcttgatggtaactgccgaactccaattgcagcctatgcttaccgtgaca 398 Query: 181 aggatgggaactgttcattccgggggctattggcttcaccagatggctctatagtatacg 240 | |||||||| || |||||||| || |||||| |||| |||||||| |||| ||||| | Sbjct: 397 atgatgggaattgctcattccgcggtctattgtcttccccagatggatctaaagtatttg 338 Query: 241 agacatcaagaagtggaacatattcttttgatgacatggtcgcgataggccaagatg 297 ||||| | ||||||||| | || |||||||| |||||||| | ||| ||| |||||| Sbjct: 337 agacaacgagaagtggaccgtactcttttgacgacatggttgagatgggcaaagatg 281
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 230 bits (116), Expect = 2e-57 Identities = 153/164 (93%), Gaps = 1/164 (0%) Strand = Plus / Plus Query: 68 tcctctttgaatcatgaagataccagtattagctgttgcatgtgaaagagaattcttgtc 127 ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 3717564 tcctcattgaaccatgaagataccag-attagctgttgcatgtgaaagagaattcttgtc 3717622 Query: 128 tgttcttgatggtaactgtcgaactccaattgcggcatatgcttatcgtgacaaggatgg 187 ||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 3717623 agttcttgatggcaactgccgaactccaattgcggcatatgcttctcgtgacaaggatgg 3717682 Query: 188 gaactgttcattccgggggctattggcttcaccagatggctcta 231 ||| ||||||||||| ||||||||||||||||| ||||| |||| Sbjct: 3717683 gaattgttcattccgagggctattggcttcacctgatggatcta 3717726 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 1 gcagttgctcaaggcgctattggaatagcttgcag 35 |||||||||||||| |||||||||||||||||||| Sbjct: 3717032 gcagttgctcaaggtgctattggaatagcttgcag 3717066
>dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0669G09 Length = 140067 Score = 230 bits (116), Expect = 2e-57 Identities = 153/164 (93%), Gaps = 1/164 (0%) Strand = Plus / Plus Query: 68 tcctctttgaatcatgaagataccagtattagctgttgcatgtgaaagagaattcttgtc 127 ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 57881 tcctcattgaaccatgaagataccag-attagctgttgcatgtgaaagagaattcttgtc 57939 Query: 128 tgttcttgatggtaactgtcgaactccaattgcggcatatgcttatcgtgacaaggatgg 187 ||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 57940 agttcttgatggcaactgccgaactccaattgcggcatatgcttctcgtgacaaggatgg 57999 Query: 188 gaactgttcattccgggggctattggcttcaccagatggctcta 231 ||| ||||||||||| ||||||||||||||||| ||||| |||| Sbjct: 58000 gaattgttcattccgagggctattggcttcacctgatggatcta 58043 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 1 gcagttgctcaaggcgctattggaatagcttgcag 35 |||||||||||||| |||||||||||||||||||| Sbjct: 57349 gcagttgctcaaggtgctattggaatagcttgcag 57383
>gb|AY105442.1| Zea mays PCO070685 mRNA sequence Length = 1591 Score = 220 bits (111), Expect = 2e-54 Identities = 251/295 (85%), Gaps = 2/295 (0%) Strand = Plus / Plus Query: 1 gcagttgctcaaggcgctattggaatagcttgcaggcagcaatgatgataaaatgatgga 60 |||||||| ||||| ||||||||||| |||||| | ||||| ||||| ||||||||||| Sbjct: 835 gcagttgcccaaggtgctattggaatcgcttgccga-agcaacgatgacaaaatgatgga 893 Query: 61 gtatctatcctctttgaatcatgaagataccagtattagctgttgcatgtgaaagagaat 120 |||||| ||||| ||||| || || |||||||| | ||||||| |||| |||||||||| Sbjct: 894 gtatctgtcctcgttgaaccacgaggataccag-actagctgtcacatgcgaaagagaat 952 Query: 121 tcttgtctgttcttgatggtaactgtcgaactccaattgcggcatatgcttatcgtgaca 180 ||||| | ||||||||||| ||||| ||||||||||||||||| |||||||| ||||||| Sbjct: 953 tcttggcagttcttgatggcaactgccgaactccaattgcggcctatgcttaccgtgaca 1012 Query: 181 aggatgggaactgttcattccgggggctattggcttcaccagatggctctatagtatacg 240 |||| |||||||| ||||||||||| ||| || |||||||||| || |||| ||||| | Sbjct: 1013 aggacgggaactgctcattccggggcctactgtcttcaccagacggatctaaagtatttg 1072 Query: 241 agacatcaagaagtggaacatattcttttgatgacatggtcgcgataggccaaga 295 |||| ||||||||||| | || ||||| || |||||||||| ||| ||| |||| Sbjct: 1073 agacggcaagaagtggaccgtactctttcgacgacatggtcgagatgggcaaaga 1127
>emb|AL109964.20|HS1118M15 Human DNA sequence from clone RP5-1118M15 on chromosome 20 Contains the 3' end of the CTNNBL1 gene for catenin beta like 1, the C20orf102 gene for a novel Immunoglobulin domain-containing protein and a CpG Island, complete sequence Length = 95851 Score = 42.1 bits (21), Expect = 0.99 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 173 tcgtgacaaggatgggaactgttcattcc 201 |||||||||||||||| |||||||||||| Sbjct: 25513 tcgtgacaaggatggg-actgttcattcc 25486
>gb|L43967.2| Mycoplasma genitalium G37, complete genome Length = 580076 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 atgaagataccagtattagct 101 ||||||||||||||||||||| Sbjct: 156108 atgaagataccagtattagct 156128
>emb|CR626884.13| Zebrafish DNA sequence from clone DKEY-83H2 in linkage group 15, complete sequence Length = 207732 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ttcttgtctgttcttgatgg 139 |||||||||||||||||||| Sbjct: 81824 ttcttgtctgttcttgatgg 81805
>gb|AC101996.9| Mus musculus chromosome 15, clone RP24-441N7, complete sequence Length = 164681 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 tgaagataccagtattagct 101 |||||||||||||||||||| Sbjct: 131198 tgaagataccagtattagct 131179
>gb|AC146562.17| Medicago truncatula clone mth2-14d10, complete sequence Length = 118505 Score = 40.1 bits (20), Expect = 3.9 Identities = 45/52 (86%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 4 gttgctcaaggcgctattggaatagcttgcaggcagcaatgatgataaaatg 55 ||||| ||||| || ||||||||||| || || |||||||||||||||||| Sbjct: 77652 gttgcgcaaggtgcaattggaatagcctgtaga-agcaatgatgataaaatg 77702
>gb|AC147430.9| Medicago truncatula clone mth2-71e6, complete sequence Length = 125478 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 37 cagcaatgatgataaaatgatgga 60 ||||||||||| |||||||||||| Sbjct: 7027 cagcaatgatggtaaaatgatgga 7050
>emb|AL139347.10| Human DNA sequence from clone RP5-871P9 on chromosome 1p21.2-22.1 Contains a NADH dehydrogenase (ubiquinone) Fe-S protein 5 (15kDa (NADH-coenzyme Q reductase) (NDUFS5)) pseudogene, complete sequence Length = 74010 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 tcaccagatggctctatagtatac 239 |||||||||||||||| ||||||| Sbjct: 16576 tcaccagatggctctagagtatac 16553
>emb|AL645685.12| Mouse DNA sequence from clone RP23-198I4 on chromosome 1 Contains a ribosomal protein S13 (Rps13) pseudogene, a ribosomal protein S27 (Rps27) pseudogene a novel genes and the 3' end of a novel gene, complete sequence Length = 218950 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 ttcaccagatggctctatagtata 238 |||||||| ||||||||||||||| Sbjct: 150470 ttcaccagttggctctatagtata 150493
>dbj|AK052121.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230048G05 product:unclassifiable, full insert sequence Length = 2835 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 atgatgataaaatgatggag 61 |||||||||||||||||||| Sbjct: 62 atgatgataaaatgatggag 81
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 gcagttgctcaaggcgctattgga 24 |||| ||||||||||||||||||| Sbjct: 1950526 gcagatgctcaaggcgctattgga 1950549
>gb|AC114424.10| Mus musculus chromosome 3, clone RP24-84L9, complete sequence Length = 220500 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 atgatgataaaatgatggag 61 |||||||||||||||||||| Sbjct: 157714 atgatgataaaatgatggag 157695 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,437,975 Number of Sequences: 3902068 Number of extensions: 2437975 Number of successful extensions: 44778 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 44700 Number of HSP's gapped (non-prelim): 60 length of query: 297 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 275 effective length of database: 17,147,199,772 effective search space: 4715479937300 effective search space used: 4715479937300 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)